Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------ARR14(2)          <---------ZAT14                                                  <----------DOF2          --------->ARR14(2)                                          ------>ZmHOX2a(2)       <---------ANAC55(1)                                          --------->ARR14(2)       <---------ANAC58                                       <----------DOF2       <---------ANAC58                                      <---------ANAC58   <---------ANAC58                            <------ZmHOX2a(1)    <---------ARR14(2)             --   <---------ANAC58          <------ZmHOX2a(1) ==============================HOX2a_HOX2a  <---------ZAT18  --------->At4g35610---------->DOF2    <------ZmHOX2a(1) <---------WOX13(1)              --------->ZAT18  --------->ZAT2     --------->MYB52(1) =====================================HOX2a_HOX2a  <---------ZAT14 --DOF2<---------ANAC46     --------->ICU4  --------->CCA1(2)<---------ANAC58             --------->ZAT14   tatgagcttgcgtatagtgaagctaaaggaaggattaagagaggagataggacttggcagattgcttttggatcgggttttaagtgtaatagtgcagttt  17605600                                                                                     <------ZmHOX2a(1)                                                                                   <---------TOE1(2)                                                                                   <---------TOE2(2)             --------->ATHB12                                                     ------>ZmHOX2a(1)           <---------------------WRI1                                 ------>ZmHOX2a(1)<------ZmHOX2a(2)       --------->HSFB2a(2)                                       <----------DOF2 --------->TOE1(2)    <----------DOF2 ------>ZmHOX2a(2)                    <---------WOX13(1)   <---------ARR11(3) -------->DOF2 <---------WOX13(1)               <---------WOX13(1)    ========================HOX2a_HOX2a   ggaaagctttgagaacgattgatccaatggacgagaagactaatccatggattgatgagattgatgactttcctgttcaagttcctaggatcactcccat  17605700                                                                   <---------ANAC46              ----                                                                   --------->ANAC55(2)           <---                                                                   <---------ANAC58        --------->TOE2(3)                                                                   <---------ANAC58        --------->YAB1                                                       ----------->GT1                    <---------YAB1                                                    <---------AHL20(2)              <---------YAB1                                                   --------->AHL20(2)               <---------AHL20(2)                                                   <---------AHL20(2)            --------->AHL20(2)                      <----------DOF2          --------->AHL20(2)  <---------ANAC55(1)   --------->ARR11(3)                <---------AHL20(2)             <---------AHL20(2)  <---------ANAC55(2)   <---------ARR11(3)          <---------ZAT6                   <---------YAB1         <<<<<<<<<NAP   <---------AHL20(2)   tacatcgtcgtagtgttttaaattcttttggagaactaatttgttatgttttattaaatgtaataacttacgtgatttgatatttttttattatcttaat  17605800              <-----------GT1           <---------ARR14(2)           --------->ARR14(2)     <---------WOX13(1)   --------->ATHB12                        ----------->GT1                                       <---  <---------YAB1                         <---------bZIP60(2)      --------->ANAC46          <------MYB46(1) ----->AHL20(1)                          <---------ANAC46         --------->ANAC58          <------MYB83 ------AHL20(1)               --------->HSFB2a(2)                 --------->ANAC58 <-----------HVH21   atatatgattgccaatttgccatatgtgagttcgagattagtgatgtgtaacatgagtttattcattcacacaagaagagtcttgtgtcacatttggtac  17605900                                                           <-------PIF5                                                           ------->PIF5                                                           ------->MYC2                                                           <-------MYC4                                                           <-------MYC2                                                           ------->MYC4                                                           <-------MYC3                                                           ------->MYC3                                                          --------->O2                                                          <---------O2                                                          <---------TGA1a                               --------->ANAC58           --------->TGA1a                               --------->ANAC46           <--------ABF1              <---------WOX13(1)                          <---------ANAC46     <-------MYC3<---------ANAC58       <---------ARR14(2)--------->ANAC55(2)        <------------CBF     ------->MYC3<---------ANAC58       ------->TEIL    <---------ALFIN1           <---------AHL20(2)    --------->O2 <---------ANAC46       --------->ARR14(2)<---------ANAC55(2)     <---------AHL20(2)    <---------O2 <---------AtLEC2    <---------ANAC46  <------NtERF2              --------->AHL20(2) -------DOF2--------->ATHB12   --------->ANAC58       ------>NtERF2           ----------->GT1    <---   tttgccacgttgtttgattgcatgttaaaccacaaggcaacgtatatggttcttggtgccacgtgttcatatacttgaaactgtttaaattgtctcttca  17606000                                                 <---------ARR11(3)                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                                 --------->ARR11(3)                                                 --------->GLK1(2)                                                 <-----------ARR10                                                <---------CCA1(2)                                                --------->GLK1(1)                                            --------->ANAC46                                           <---------LBD16                                    -------                                         ------>ZmHOX2a(2)                                    -------                                   <----------DOF2                                 --------->WOX13(1)                              --------->MYB59--------->LBD16                  <-------TEIL    -------                    --------->ANAC58    <---------GLK1(1)               <XXXXXXXXXXXXXXXXXXXXMIR823                    --------->ANAC58   --------->ARR11(3)        <----------DOF2  <---------ICU4 ------TOE2(3)   *TSS   ---------->DOF2<---------ARR11(3)        <---------DAG2  <---------YAB1   aggattttacaaagatggagagaagcaaaagttatgtctttgatctccgcaaatcttatgcgaggcactttttttgtatgttcatcattcaagtctaagc  17606100                      ----------->GT1                    --------->LBD16                    <---------LBD16                    <---------ZAT14      ------->TEIL                    --------->ZAT14    <---------ZAT18         <------MYB46(1)            <---------ANAC55(1)              ------>MYB46(1)        ---------         <------MYB83<---------DEAR3(1)<---------ZAT14               ------>MYB83          <---------ANAC58         ----------->GT1            <---------ANAC58               ------->GAMYB--------->LBD16    <---------HSFB2a(2)             <---------ANAC58         <-------GAMYB     <---------LBD16    --------->HSFB2a(2)--------->At5g28300           <-------GAMYB--------->MYB46(3)       <---------ANAC58 -->ANAC58         --------->DEAR3(1)--------------->AtSPL8 ----------->GT1    <---------ANAC46 -->ANAC58       <---------At5g28300<---------ANAC46 <-----------HVH21        <---------LBD16<------- -->ANAC46     --------->MYB46(3)<---------MYB52(1) <---------DEAR3(2)       --------->MYB52(1)     <   catggtctggaaggttaatcaccgcggtgaaatcggtttcgtgtacttctaagccggttagagggttaaccaactatagtaccggggtctatttcgttag  17606200                                        <---------LBD16                                       ------>ZmHOX2a(1)                                   ==================================HOX2a_HOX2a                                   ------>ZmHOX2a(2)                                  <---------GLK1(1)                                  --------->GLK1(1)                                 --------->ARR14(2)                                 <---------ARR11(3)                                 --------->ARR11(3)                                 <---------ARR14(2)                                 <---------AGP1       <---------ETT(2)        <---------MYB46(3)                                                   <       <---------WRKY12       --------->ALFIN1                                                    <--       <---------WRKY38(1)   <---------MYB52(1)                                                   ---      --------->WRKY18(1)  --------->LBD16                                                       <--- >TOE2(3)----------->RAV1(1)--------->LBD16                                                      ---- --MYB52(1)    --------->GLK1(1)<---------CCA1(2)    <-----------GT1      <------ZmHOX2a(1)      <--- ---------ARR14(2)        <---------LBD16     ---------->DOF2 <------ZmHOX2a(1)         -------------   ccaaaccggtccaccagaaatcaagtttcccggtggatctccttcggagaaagagttaccttcaggaccaagtagaggaccagagttggctccattagaa  17606300     --------->HSFC1(2)     <---------At4g35610     <---------HSFC1(2)     --------->HSFB2a(1)     <---------HSFB2a(1)     --------->At4g35610     <---------ZAT2     --------->ZAT2    <---------ARR14(2)    --------->ARR14(2)    <-----------ARR10                                                                       ---------  --------->LBD16                                                                       <---------ALFIN1 --------->HSFB2a(2)                                                                    --------->AtMYB61 <---------ANAC46                                                                      --------->MYB46(3) <---------HSFB2a(2)                                                        --------->DEAR3(1)     <- ---------LBD16                                 <---------MYB52(1)          --------->AtMYB61 ------- -------ARR14(2)                               --------->LBD16              <---------ALFIN1<-------- ------>ARR14(2)                             <---------LBD16               --------->ANAC46 --------- ------HSFB2a(1)                           <---------ALFIN1              <---------ALFIN1   --------- ----->HSFC1(2)                      --------->ARR14(2)                 --------->MYB46(3) --------->DEAR3(1) ------HSFC1(2) <-----------GT1      <---------ARR14(2)                 ------>ZmHOX2a(2) --------->ANAC46 ---->AGL3 ------>ZmHOX2a(1)    <-----------HVH21            <---------ARR14(2)<---------ALFIN1<-----   gttccggagcttcctaatataccagagataagtccgtcggaaactccaccggaagttacaacggttccaagtgatccacccccgcttggaccaccgcaga  17606400          <---------HSFB2a(1)          <---------HSFC1(2)          --------->HSFB2a(1)      <------NtERF2     <---------LBD16    --------->AtMYB61   <---------PCF2 <---------TCP16(1)   ------>NtERF2  --------->ARR14(2)   --------->PCF2 <---------ARR14(2) --------->LBD16  <---------TCP20                               ------>ZmHOX2a(1)                 <-- >At4g35610 <---------ARR14(2)                  <---------ARR14(2)              ----------->RAV1(2) --------LBD16  --------->LBD16                 <---------ARR11(3)  --------->ANAC46              --- -->DEAR3(1)--------->ARR14(2)                  --------->ARR14(2)--------->REM1(1)  <---------REM1(1) -At4g35610 --------->GLK1(2)                   <---------GLK1(2) --------->ANAC46----------->HVH21 >LBD16   --------->HSFC1(2)           --------->DEAR3(1)    ------>ZmHOX2a(1)<---------ALFIN1 ------ >ZAT14--------->LBD16  <---------ALFIN1   ------>NtERF2 <---------ARR14(2)   --------->AtMYB61<----- ----ATERF1(1)<---------LBD16       <---------ALFIN1     --------->ARR14(2)--------->ANAC46   ------>NtERF2   ctccgggcccggagtttccggttccaccatctccatctccaccgatgccagatactccaaatcctcctacaccaaaaacaccacctgatgtagtgcctcc  17606500  Previous    Next  AGI:  At5g43760.1    Description:  beta-ketoacyl-CoA synthase, putative. Identical to 3-ketoacyl-CoA synthase 19 (KCS19) [Arabidopsis Thaliana] (GB:Q9FG87;GB:Q94CA1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT1G04220.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96299.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71273.1); similar to beta-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABV60087.1); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392); contains InterPro domain Range:  from: 17602990    to: 17605824    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g43770.1    Description:  proline-rich family protein. contains domain PRICHEXTENSN (PR01217) Range:  from: 17606017    to: 17606694    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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