Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------ANAC46              <---------ANAC58              <---------ANAC58                               <----------DOF2   --------->ZAT2                                    <------ZmHOX2a(1)                     --------->YAB1   <---------ZAT2                                ---------->DOF2           <-----------GT1 <---------   <---------At4g35610                           --------->MYB52(1)    <---------ICU4   <---------ICU4   --------->At4g35610                     --------->RAP2.6(3)   --------->ANAC46  <---------ATHB12 ---->ZmHOX2a(2)                          --------->MYB52(1)--------->TOE2(3)    --------->WOX13(1) ------ARR11(3)                          ----------->HVH21  --------->TOE1(3) --------->TOE2(3) ----->ARR11(3)                        --------->HSFB2a(2)-------->P  --------->ICU4 ----------->GT1   atctcagctagttattgtgtgcaaaacaactaaatgttcttctctaacggctaaaggacttacctttacgacataattaacatcaatgagtaattacaac  17573500                                                                                                    =                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                               --------->WRKY12    --                         --------->LBD16                                       --------->WRKY38(1) --             <----------DOF2                                               <---------ATHB12        <-     <---------ARR11(3) <---------HSFB2a(2)                   <---------At4g35610 ----------------->AGL1     --------->ARR11(3) <-----------RAV1(2)     --------------->AGL15     ------>MYB83            <-- ---------->DOF2    <-----------HVH21           <---------------AGL15     ------>MYB46(1)   --------- --GT1<------ZmHOX2a(2) --------->HSFB2a(2)    <-----------------AGL3<-----------GT1        <--------   atccaaagatcaagactttaagtgtcccagaagactaaattgttctaatactcaatttggggacaactgataaaccaatcgatgaccaaaatcgaaatcc  17573600    --------->ALFIN1 ===============HOX2a_HOX2a ------>ZmHOX2a(2) ===============HOX2a_HOX2a ------ZmHOX2a(2) -------->CCA1(2) ------->ARR11(3) --------ARR11(3) --------ARR14(2) ------->ARR14(2) ------->AGP1 --------AGP1                                            <-----------HVH21 -------CCA1(2)       <---------CCA1(2)  --------->REM1(1)                                       <--- >GLK1(1)      <-----------GT1          <-------TEIL    <----------DOF2                    --------->LBD16 -GLK1(1)<------ZmHOX2a(1)   <---------At4g35610     --------->ZAT6--------->GLK1(1)      --------->ANAC46   agatctgtggaggaatgttacctcgtctctaagctgtttagcttcatcaggcttaacactttcagcgagaactccatggtgaagaacaaaacccgaaaat  17573700                                                                          <---------MYB52(1)                                                                          --------->DOF5.7(2)                                                                         --------->TOE2(3)                             --------->O2                               <---------ANAC46                        --------->ANAC58                            --------->HSFB2a(1)                      ---------->DOF2                               <---------HSFB2a(1)                  --------->ANAC58                      <-----------------AGL2       <------ZmHOX2a(2)--------->ANAC46            ---------->DOF2 --------->HSFC1(2)      --------->ARR11(3)--------->ANAC58           --------->YAB1   <---------HSFC1(2)    ------->TEIL --------HVH21    --------->ANAC58          --------->WOX13(1) <---------LBD16  --------->ALFIN1   gtcagagagatcaagatggcaaacaaaagccacttgaaatttgagtccatcaataaaagctattttggggagtttcgttaatgtgttgaatgaatcttct  17573800                            <---------HSFB2a(2)                           <---------TOE1(1)                        <-----------HVH21                  <---------At4g35610              ========================HOX2a_HOX2a              ------>ZmHOX2a(2)             --------->GLK1(1)                                   ------>NtERF2             <---------GLK1(1)     --------->GLK1(2)         <---------DEAR3(1)            --------->ARR11(3)    <---------ARR14(2)   <-----------TGA1         --------->YAB1            <---------ARR11(3)    <---------GLK1(2)    <-----------HVH21       <---------ATHB12            --------->ARR14(2)  ----------->ARR10     --------->ANAC46       --------->WOX13(1)   <--            <---------AGP1 <---------TOE2(1)        ------->GAMYB--------->ABI4(2)               *TSS            <---------ARR14(2) <------ZmHOX2a(1)  --------->At4g35610     ------>ZmHOX2a(1)   <------           <---------CCA1(2)--------->HSFB2a(2)   <---------At4g35610--------->bZIP60(2)  --------->MYB46(3)   cagacatcactctggatctctgctcttgtccgaggagattcttgagtttttcaactgcgtcactcggtgcctcgtccttcaatcacaattcaacaaatca  17573900                                                                     <---------YAB1                                                                   --------->ATHB51                                                                   --------->AHL20(2)                                                                   <---------AHL20(2)                                                               <---------AHL20(2)                                                            <------------CBF                                                           -------->HAHB4                                                           --------->ATHB51                                    <---------YAB1         -------->ATHB1                                 --------->AHL20(2)        <---------ICU4                                 <---------AHL20(1)        --------->ATHB12                            --------->AHL20(2)             <---------AHL20(2)                            <---------AHL20(1)            <---------YAB1                            <---------AHL20(2)            <---------ATHB51              <---------TOE2(3) <---------ARR11(3)     --------->AHL20(2)                --------->ICU4                <---------TOE1(3) --------->ARR11(3)     <---------AHL20(2)              --------->YAB1        <-------GAMYB <-------TEIL -------ATHB12       --------->TOE2(3)                 --------->AHL20(2)    --------->MYB52(2) ---ATHB12     --------->TOE2(3) <---------AHL20(2)   <---------MYB52(1)     <---------MYB46(3)   ataaatctttgggtttttcttaacatttattttattttatttttgttttttcagccattaattattgaattatttttgttcgttgtagttaatgttcatt  17574000              <---------AHL20(1)                                                     --------->ANAC58              --------->AHL20(2)                                                     --------->ANAC58              <---------AHL20(2)                                                  --------->LBD16              --------->AHL20(1)                                                 --------->ANAC46           --------->YAB1             --------->At4g35610                       <---------LBD16         <---------YAB1          --------->YAB1                                <---------At5g28300       --------->ATHB51         <---------YAB1                       <---------AHL20(2)       <--------HAHB4       <---------GLK1(2)                        <---------AHL20(1)       -------->ATHB1     <---------TOE2(3)                          --------->AHL20(2)  --------->ANAC58       <---------ICU4--------->ARR11(3)                     --------->ZAT14   <-----------GT1      --------->ICU4 <---------ARR11(3)      --------->AHL20(2)      --------->AHL20(1)  --------->ANAC58   tctcttgaattattaataaattagattttagattatgatcagttcaatataacatatatcagttctctaaatttattgttttaccgcaagaacgctaaac  17574100                                                                                               ------                                                                                     <---------WOX13(1)                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                                   --------->ATHB12                                                                ------->TEIL       <---------MYB46(3)                     ----------->GT1                            <-------TEIL    --------->TOE2(3)                    <---------TOE2(3)                       <---------------AtSPL8<---------YAB1   aatttcattctctcagaaaattttggttaaaaaatagttgcattagaaagaatgaaattgtttatgtacattgtattaaaaacgttgattggcaaaacca  17574200                               <XXXXXXXXXXXXXXXXXXXXMIR1886.2                  <---------AHL20(2)                                 --------->AHL20(2)                  --------->AHL20(2)                                 <---------AHL20(2)                 <---------AHL20(1)                                  --------->AHL20(1)                 --------->AHL20(2)                           --------->YAB1                        <                 <---------AHL20(2)                           ----------->GT1      ---------->DOF2  <        --------->MYB46(3)    --------->WRKY18(1)  --------->HSFB2a(2)   <---------AHL20(2)     <---- --->AtMYB61     --------->AHL20(1)<---------ICU4  <---------HSFB2a(2)  <---------AHL20(2)<---------YAB1   aaacttgctaacaacttaatttattttttgcagtcaaacatttcttctcatttctaaaaactaattgtaaattttttatttagaataaagttttcattct  17574300                                                                                        --------->TOE2(3)        <---------ANAC46                                                              <-----------ARR10        <---------ANAC58                                                           --------->ANAC58        <---------ANAC58                                                           --------->ANAC55(2) <---------------AGL15                                                             --------->ANAC58 <---------DAG2      <---------YAB1                                    >>>>>>>>>RAP2.2--------->ARR11(3) <----------DOF2    <-----------GT1                       --------->AHL20(2)       <---------ANAC55(2) --------------->AGL15<---------ICU4                      <---------AHL20(2)  <----------ID1 ---------ANAC58   --------->YAB1                        --------->AHL20(2) ---------->DOF2 ---------ANAC58--------->YAB1                ------>ZmHOX2a(1)        --------->TOE2(3)--------->YAB1 ------DOF2    --------->ICU4                --------->TOE2(3)       --------->GLK1(2)<---------ARR11(3)   ttgcttttttgggtgcaaaaattatcatttcttcacttatttgttttcctcaaaaactatttaattcggacaatctaaaaaagacaagtatcttaactga  17574400  Previous    Next  AGI:  At5g43710.1    Description:  glycoside hydrolase family 47 protein. similar to glycoside hydrolase family 47 protein [Arabidopsis thaliana] (TAIR:AT1G27520.1); similar to hypothetical protein OsJ_003536 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13711.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71284.1); similar to putative aspartyl(D) tRNA Synthetase (89.0 kD)(drs-2C) [Oryza sativa (japonica cultivar-group)] (GB:BAD52943.1); contains InterPro domain Glycoside hydrolase, family 47; (InterPro:IPR001382) Range:  from: 17569357    to: 17573897    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g43720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04230.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74699.1); contains domain PD033977 (PD033977) Range:  from: 17574393    to: 17576581    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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