Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------AHL20(1)                                            <                                      <---------ARR11(3)                                      -------                                --------->HSFB2a(2)                                         <--------                                <---------LBD16                                          --------->YAB1                       --------->AHL20(2)                                              --------->AHL20(2)                       <---------AHL20(2)    <---------AHL20(2)        <---------TOE2(3) xxxxxxxxxxxx                      <---------AHL20(1) <---------AHL20(2)       <----------DOF2   --------->AHL20(2)                   --------->AHL20(2) --------->ARR11(3)        --------------->AGL15  --------->AHL20(1)         <----------DOF2--------->AHL20(2)   --------->AHL20(2) ===================================== --------->GT1 <---------AHL20(1)   --------->ARR14(2)   <---------AHL20(2)         <---------AHL20(2) --->KAN4(2)   --------->AHL20(1)   <---------ARR14(2)  --------->AHL20(2)    ----------->GT1 <------ ->GT1   --------->TOE2(3)      <---------HSFB2a(2) <-------TEIL<---------------AGL15 --------->YAB1<   tctgttaaatactttaatatataaaataatttttctcggatatatttttaaatatacataaaatttctcttttaagttttaagtaaaaaaataataaatc  17517400        <----------DOF2       ===============================================================================MADS_MADS       --------------->AGL15       <---------------AGL15       <---------DAG2      ----------------->AGL1  <---------MYB52(1) ---------ANAC58                                                               --------->ATHB12 -->ARR11(3)                                                                   <---------ICU4 -AHL20(2)     --------->YAB1                                                 <---------YAB1 xxxxxxxxxxx>smallRNA(le3)                     ---------->DOF2              --------->YAB1<----------DOF2 ======================MADS_MADS            --------->ANAC58          --------------->AGL15 ---ARR11(3)  <---------YAB1                --------->ANAC58       <-----------GT1    <---------CCA1(2) ---------ANAC58                   <---------WOX13(1)          <---------YAB1<---------TOE2(3)   tttcgtttgcctttttatgaaaatatagattaaactaattgatgacaagaaaagacattagttttcttattaccatattgatgatttcatctctttctct  17517500                                                                                                 <---                                                                                                 ----                                                                                                 ----                                <---------ARR14(2)                                               <---                            --------->At4g35610         --------->AHL20(2)                      -----                            <---------ZAT14             <---------AHL20(2)             <---------AHL20(2)                  ---------->DOF2               --------->TOE2(3)          --------->AHL20(2)   <----          ----------->GT1   --------->ZAT14   <---------TOE2(3)    --------->ICU4      --------->AHL20(2)        ------------------------>ANAC81       ------->TEIL         <---------YAB1     --------->YAB1   tgtaatacaaaatggataaaaaaagaacagagcagaaatgaaaacatgaacgttatatataaatatgtcatgaatgaaaaaataactattaaaacaaatt  17517600     ----------->GT1    <---------TOE2(3)    <---------TOE1(3) ------AHL20(1)                                                                           <---------- ----->AHL20(2)                                                                          <-----------GT1 ----->AHL20(1)                                                                    <----------DOF2 ------AHL20(2)                                    <-----------GT1             <---------CCA1(2) ---->AHL20(2)                                <----------DOF2                <---------ANAC58 -----AHL20(2)                          <-----------GT1                      <---------ANAC58   aaatttaaggttaaaatttgttctctctgtttcgctgtgttttttcttctttcttacaatctctccatttctctctcttccgtctctttttttatctctc  17517700                                                 ------>ZmHOX2a(2)     --------->At4g35610                                 <---------ARR11(3)     <---------ARR11(3)                        <--                                 --------->ARR11(3)     --------->ARR11(3)                        ---                     --------->ZAT2            <---------ARR11(3)     *TSS  --------->LBD16       <--                   --------->ZAT18             --------->ARR11(3)    --------->YAB1             -----     --------->ARR11(3)       <---------AHL20(2)--------->GLK1(1)    <---------ICU4<---------ANAC58 <    <---------GLK1(2)<---------At4g35610      ------->GAMYB         <---------ATHB12         <------- <---------HSFB2a(2) <---------ZAT2         <---------TOE2(3)   ------------>CBF   <---------ANAC58-- --------->HSFB2a(2) --------->At4g35610   <-----------GT1 <----------DOF2 <-----------RAV1(2) ------ -GT1--------->GLK1(2)        --------->AHL20(2)<------ZmHOX2a(2) --------->WOX13(1)        <--------   tctctagaatcttgaagagagcgagcttccattaaaatctcattctaacgatctccaagctctttcttcaatcatctccaggtttgcttcgatctacacg  17517800         --------->ANAC58         <---------TGA1a         --------->ANAC46         --------->ANAC55(2)         <---------O2         --------->ANAC55(1)         --------->ANAC58      <---------REM1(2) <---------ANAC46 -------DEAR3(1)                                                   --------------------->WRI1 ------>DEAR3(1)                                            <---------MYB52(1) -------ANAC46                                             <---------RAP2.6(3) ------------------>TaNAC69(2)  ------>ZmHOX2a(1)         <---------ANAC46 ------NtERF2        <---------ARR11(1)                   <---------ANAC58 --ALFIN1--------->TGA1a       --------->TOE2(3)          <---------ANAC58              --------->GLK1(1) ---->NtERF2        <---------CCA1(2)                <---------ANAC58              <---------At4g35610 --->ANAC46     ------>ZmHOX2a(1)                    <---------ANAC46             ------>ZmHOX2a(2) -REM1(2)--------->O2--------->ARR11(3)              <---------ANAC58            <------ZmHOX2a(2)---   gcgtcgtttacacgtctccttcaaatctttcttccttacttctccgatttcaatttcgtgccgttttttttttgagttttccgatcgctgatttcttcaa  17517900                                                                                             <-------                                                                                             --------                                                                                             --------                                                        <---------WOX13(1)                   <-------                                                     <---------AHL20(2)                   ------>ZmHOX2a(1)                                                     --------->AHL20(1)               <---------ARR14(2)               <-----------GT1                       --------->AHL20(2)               --------->ARR14(2)           <---------AHL20(2)                        <---------AHL20(1)              <---------GLK1(1) ------>AHL20(2)               ----------->GT1    --------->WOX13(1)      ---------->ID1 --------->TOE2(3)   atatttatcgaattttttttcaatgttttctgtttgtaaattctctgtaattcaattaattgaatcgaataattttgtctctcttgcatttcctcagctc  17518000                            <---------DAG2                                             --------->ATHB12 <----------DOF2            <----------DOF2                                           --------->ICU4 --At4g35610         <---------TOE2(3)  <---------TOE2(3)                        <---------ANAC46 ->ZAT2 <---------AHL20(2) <---------ANAC58      --------->TOE2(3)             <---------ANAC46 ->At4g35610         <---------YAB1     <---------TOE1(3)              <---------TOE1(3) --ZAT2 --------->AHL20(2) <---------ANAC58   --------->KAN4(2)        <---------TOE2(3)       <-----   cagcttttgttttattagtttctaagattgctttttgtttttagggtttattctcaattcttatatagtttttgaggtttttggtgtattgatttgattc  17518100                                                                                                  ---                                                                                               ------                                                                                              <------                                                                                            <--------                                                                                            ---------                                    ----------->HVH21                                      <---------YAB1                                --------->At4g35610                                      <---------ICU4                        <----------DOF2                                                 <---------YAB1                     --------->GLK1(2)                                     <----------DOF2 --------->ICU4                    <---------GLK1(2)                                 --------->YAB1    --------->ICU4             --------->ATHB12   --------->ZAT2                       <---------YAB1   --------->YAB1           <---------WOX13(1)   <---------ZAT2  <---------TOE2(3)<---------At4g35610 <---------YAB1 --TEIL  --------->ATHB12       <---------At4g35610              --------->At4g35610 --------->ICU4   atgtgagtgagtgattgatttagaatctttgttgagctgtgactgtgatttagatttgattcacttcagctataattctttgttttgatgatgattatga  17518200   <---------ANAC55(2)                                                                  <---------ARR11(3)   ----------->GT1                                                                      --------->ARR11(3)   --------->ANAC55(2)                               --------->TOE2(3)              --------->YAB1  <-------TEIL                                       --------->YAB1                <---------ATHB12 ------>AHL20(2)                                   --------->ARR11(3)             <---------TOE2(3) --->YAB1                                          <---------ARR11(3)       --------->ZAT18 ---YAB1                                    <---------YAB1          <-----------HVH21 <---------YAB1 -ICU4        <---------At4g35610<---------------AGL15       --------->LBD16<---------ZAT14 --------- >YAB1  --------->ICU4      --------->TOE2(3)--------->YAB1<-----------RAV1(2)  --------->ICU4      <   taaattcgtaattttgagcttatttgaattcattaactaatttagtatgatgaaatcttaatcaggggaatgtcagagagtactaatgaagatagtggag  17518300  Previous    Next  AGI:  At5g43560.1    Description:  meprin and TRAF homology domain-containing protein / MATH domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71320.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 17517770    to: 17522873    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version