Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------WRKY12                               <---------WRKY45                               <---------WRKY38(1)                             <---------PCF2                             <-----------HVH21                            <------MYB46(1)         --------->GLK1(2)                          ------              <---------MYB46(3)    ---------->DOF2 --------->ARR14(2)                     <---------At4g35610      --------->At4g35610   <------MYB83 --------->ALFIN1                                  --------->At4g35610      <---------At4g35610  <---------MYB46(3)       <---------ARR14(2)            <---------At4g35610      --------->ZAT2      --------->ALFIN1       --------->MYB46(3)            <---------At4g35610 --------->DAG2       <------ZmHOX2a(2) --------->ARR11(3)--------->WRKY18(1)  ------>ZmHOX2a(1)    < --------->DOF2 <---------ANAC46---------->DOF2----------->RAV1(1)    <-----------GT1   <---------At4g35610   gaaaaagcagcttcagtggtttagatcagtgggtcaaagaaagatgtggcaacaaatctggtcaagtttttctcaccattcctctgcttctgcagatgag  17512400                           --------->ANAC58                           --------->ANAC58                                ----------->GT1                           --------->ANAC46                              <---------ANAC58                         ---------->DOF2                                 <---------ANAC55(2)                        -------->P                                       <---------ANAC58                        ------>MYB83                                     <---------ANAC46                        ------>MYB46(1)                           <---------MYB52(2)                      --------->TOE1(2)                           --------->MYB46(3)                  <---------MYB52(1)            ---------->ID1    <------------MYB.PH3(2)                 <---------RAP2.6(3)      --------->ARR11(3)  --------->LBD16                <---------ANAC55(2)      <---------ICU4      <---------ANAC55(2)              -------                <---------ANAC58         --------->ATHB12    --------->ANAC55(2)      --------->ZAT18                <---------ANAC58  --------->GLK1(2)          --------->HSFB2a(2)    --------->ANAC46                <---------bZIP60(1)     <---------YAB1       <---------ANAC58       <---------ANAC55(2)                --------->ANAC55(2)     --------->ICU4       <---------ANAC55(1)    --------->ANAC58                <---------ANAC46 <---------GLK1(2)           <---------ANAC58       --------->ANAC55(2)                --------->bZIP60(1)     <---------ATHB12     <---------HSFB2a(2)    --------->ANAC55(1) ----->GT1    --------->ZAT18    <---------ARR11(3)          ----------->GT1        --------->ANAC58< ---------MYB111(1)--------->ARR14(2)  <---------TOE2(3)     <---------ANAC46      --------->RAP2.6(3)   taactactaaactaagtgccgtaacctacaagcaagattctaatgattttgtcttatattgttccgtaacaaactacgtgtaaaatacggcactgccaaa  17512500                                ------>ZmHOX2a(1)                        --------->ARR14(2)                        <---------ARR14(2)                        <---------GLK1(2)                  --------->ANAC58                                                              <----                  --------->ANAC58                                                              <----                --------->At4g35610                                                       --------->AHL20(1)       --------->YAB1   <---------ARR11(3)                                 --------->ANAC58    ------ --->DOF2       <---------At4g35610    --------->ICU4<---------YAB1        --------->ANAC58  <------- -------TEIL  <---------HSFB2a(2)      <---------ARR14(2)                  --------->ANAC46<---------YAB1   gctacataatcaaatttcagaagccagatttttcctatgcaaatattgtatgagtatgatatagctacaatctacataagctacttaacaaatatgttag  17512600                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                <---------AHL20(2)                                                               --------->AHL20(2)                                                               <---------AHL20(1)     <---------AHL20(2)                                                               --------->AHL20(1)  ------>MYB46(1)   ---------->ID1        ------->TEIL      --------->DAG2      <---------AHL20(2)  ------>MYB83 --MYB46(1)         --------->At4g35610   ---------->DOF2      <---------ARR11(3)<---------MYB59----- --MYB83        --------->ARR14(2)     --------->YAB1          --------->ARR11(3)------->GAMYB <----- --->MYB59      <---------ARR14(2)   ------->TEIL             --------->AHL20(2)--------->MYB46(3) --MYB52(1)<---------ANAC46       <---------YAB1    <---------ZAT6        <--------P  --------->AHL20(2)   gttttgtcgattttcgtctatccgatgaatctagtcatgaatcaaaaagtactagtgtatacaaatatatttgcaggttgcaaccaaattatatagagag  17512700                                                                                                  <--                                                                                                  <xx                                                                                                  <--                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                  <--                                                                                                 <xxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              <------                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <-------                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          --------->ARR14(2)                                                                                          <xxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           --------->LBD16<---------ARR14(2)                                                                          <---------LBD16 <xxxxxxxxxx                                                                         <---------LBD16  <xxxxxxxxxx                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        ------>MYB46(1)   <xxxxxxxxxx                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <---------ZAT2<xxxxxxxxxxxxxx                                                                        ------>MYB83  xxxxxxxxxxxxxxx                                                                        --------->ZAT2<---------LBD16                                                                       --------->MYB55(1)<xxxxxxxxxxx                                                                      --------->MYB46(3)<xxxxxxxxxxxx                                                                      <---------ALFIN1<xxxxxxxxxxxxxx                                                                      <---------MYB55(2)--------->LBD16                                                                      <-----------RAV1(2)<xxxxxxxxxxx                                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxx                                                                  --------->ZAT14     <xxxxxxxxxxxxxx                                  <----------ID1                  <---------ZAT18     <xxxxxxxxxxxxxx                               ---------->DOF2                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      ----------->GT1                         --------->DAG2<------NtERF2<xxxxxxxxxxx                 --------->ANAC58 ----------->GT1    ----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxx                 <---------ANAC55(2)                <---------TOE2(3)<---------At4g35610<xxxxxxxxxxxx ------->TEIL    --------->ANAC55(2)               --------->ZAT14<---------ZAT14    <xxxxxxxxxxxxxxx ---->CCA1(2)    --------->ANAC55(1)      --------->AHL20(2) ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(s) -----ID1        --------->ANAC58----------->GT1   ---------->DOF2--------->ZAT18   ------->TEIL-----   acgaacatccagcctggaaacgtaatgtaagaaaaaaggaaaaaaaaaatcactaaagtaacaaaaagtgcaccagccgggaattgaacccgggtctgta  17512800                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------ZAT18  <xxxxxxxxxxxxxxxsmallRNA(fl3)     <------NtERF2      <xxxxxxxxxxxxxxxsmallRNA(le3)     --------------->AtSPL8   <-----------RAV1(2) <xxxxxxxxxxxxxxxxsmallRNA(fl3) -------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(si3) -------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(fl3) -------ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxsmallRNA(se3) ---ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(se3) --DEAR3(2)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxsmallRNA(si3) --------->AtMYB61   <-----------RAV1(1) xxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(le3) xxsmallRNA(fl3)--------->ANAC46         <---------LBD16 x>smallRNA(s)  --------->ANAC58       *TSS--------->LBD16 xxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxsmallRNA(si3) xxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               --------->At4g35610 xxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                      --------->ATHB12 xxxxxxxxxxxxxxxxsmallRNA(se3)      <---------DAG2                         -------->HAHB4 xxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <---------ICU4 xxsmallRNA(i)--------->YAB1  <-----------RAV1(1)   --------->HSFB2a(2)   --------->ICU4 --------->AtMYB61 xxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------YAB1 <---------MYB59 xxxxxxxxxxxxxxxxxsmallRNA(se3)     <----------DOF2 <---------HSFB2a(2)   <---------ATHB12 ------>MYB46(1) xxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------GLK1(2)    <---------At4g35610 xsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC46       <---------TOE2(3) ------>MYB83 -->TEIL <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC55(2)<------ZmHOX2a(1)  ---------->DOF2    <-   ccgtggcagggtactatcatgccactagaccactggtgctttttgcggaatgttgtggaactaggattctaaactaatgatggaaagcagaccaaaccca  17512900            --------------->AtSPL8        --------->ALFIN1            <---------------AtSPL8      <---------REM1(1)           <------MYB83 <---------ANAC55(2)           <------MYB46(1)       <---------ATHB12           <---------ANAC46      ------------>CBF           <---------ANAC55(1) --------->WOX13(1)   <---------AHL20(2)          --------->MYB59    ------------>CBF   --------->ICU4   <---------ZAT14          --------->MYB111(1)<---------ATHB12  --------->At5g28300                       --------->ARR11(3)     --------->LBD16    --------->ANAC58<---------bZIP60(2)      --------->ZAT18         <---------ARR11(3)   <---------LBD16      --------->ANAC58<-----------RAV1(1)      --------->ZAT14     ----------->HVH21  --------->MYB52(1)    --------->ANAC55(2)   ----------->GT1    <---------ZAT18 --------->YAB1 --------->MYB52(1)--------->ANAC46  <---------ATHB12      --------->GLK1(2)    <---------ATHB12 --------MYB52(2)  --------->ANAC55(1)--------->YAB1--------->AHL20(2)        --------->WOX13(1)    <   aacaaaccggattaggtgtacatgtaacgtaatcaatcaatgatgtggcagtaattaaacgaatcagtgtactcgagttgcaatcaaatgacatcttcat  17513000                 ----------->GT1                 --------->ANAC58              <---------ATHB12                        <---------YAB1           <---------AHL20(2)                       --------->AHL20(2)       ----------->GT1                     <---------At4g35610                       <-----------GT1     <---------At4g35610      <-----------GT1    <---------ICU4         <---------TOE2(3)     <---------ZAT2--------->AHL20(2) <---------ANAC55(2) <-----------GT1         --------------->AtSPL8 -----------GT1  --------->ANAC58  <------ZmHOX2a(2)<---------AHL20(2) ---------->DOF2       --------   tttttcgagctgtttaatcaagaaaatactatttacgatcacctaagctaatatttatttttagcccataaactaaagtttagttttgtactctattatg  17513100                                                        <---------YAB1                                                      --------->YAB1                      --------->AHL20(2)             <---------YAB1       --------->AHL20(1)                   --------->YAB1                  <---------ICU4         --------->ARR11(3)                <----------DOF2                    --------->YAB1         <---------ARR11(3)      <---------YAB1  <---------AHL20(2)          --------->ICU4          <---------AHL20(1) ->YAB1 <----------DOF2                       <---------YAB1          --------->YAB1      -----------   tctatgttatctttatctctttgataaatttttgaaagtttatgacttatgaattatgataattcgttttcatcaaaatattgtttttgttttagtaaaa  17513200                                                  ------>MYB83                                                  ------>MYB46(1)                                                <---------MYB59                         <-----------GT1                                       --------->WOX13(1)                              <---------YAB1    <-------GAMYB                    --------->WRKY18(1)                             <---------ICU4   <---------MYB46(3)            --------->At4g35610                               <---------GLK1(2)   ------>ZmHOX2a(2)       --------->DAG2       <---------MYB46(2)           ----------->GT1---------  <---------YAB1          ---------->DOF2<---------ATHB12                   --------->DAG2  --------- >GT1      <---------RVE1(1)     <---------At4g35610 <----------DOF2  <---------------AGL15 ---------   aatgatcgttgtgatattttgtagtagaaaaagtaagcagtcaatcgagacctaacttttaaaaacgttttgcgataaaaggttagattattacaagaca  17513300  Previous    Next  AGI:  At5g43535.1    Description:  pre-tRNA. tRNA-Gly (anticodon: GCC) Range:  from: 17512769    to: 17512839    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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