Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ARR11(3)                                                                              <---------ARR11(3)                                                                         <---------MYB46(3)                                                                         <------MYB46(1)                                                                        <---------AtMYB61   <--------                                                                       <--------P           ---------                                                                     --------->ALFIN1   <---------AHL20(2)                                                                  --------->DAG2    <---------YAB1                                                                 --------->DAG2  <---------AHL20(2)        ------->GAMYB          --------->TOE2(3)                ---------->DOF2  --------->AHL20(2)     <-----------GT1--------->GLK1(1)                       <----------ID1 <--------P  <---------YAB1     --------->MYB52(1)        --------->TOE1(3)          ---------->DOF2<------MYB83 <---------AHL20(2)   agcgaattaaccgaaaactcagaaatctaaaaacattaactgaatttcaacaaaaaaaaaaaaagaaaaaggtgttggtagattttatttttatttaaaa  17506200                   --------->AHL20(2)                  <---------ATHB51                  --------->AHL20(2)                  <---------AHL20(2)                  <---------ATHB12      <---------ARR14(2)                                                               --------->TOE2(3)      --------->ARR14(2)                                                               <---------MYB59     --------->CCA1(2)                                 --------->ANAC58                <---------MYB46(2)     <---------GLK1(1)          <---------ICU4         --------->ANAC58      --------->ARR14(2)     --------->GLK1(1)          --------->ATHB51       ----------->GT1       <---------GLK1(2)  <----    --------->ARR14(2)         <---------YAB1         --------->DAG2         <---------ARR14(2) <----    <---------ARR11(3)       --------->YAB1 <---------ARR11(3)              ------>MYB83 ------>MYB46(1)    --------->ARR11(3)--------->AHL20(2)    <---------GLK1(2)               ------>MYB46(1)  <-------    <---------ARR14(2)<---------AHL20(2)    --------->ARR11(3)            <---------MYB59------>MYB83 -AHL20(2)      ------>MYB46(1)--------->ICU4        ---------->DOF2   <-----------GT1--------->ANAC55(2) >AHL20(2)      ------>MYB83<---------YAB1----------->ARR10  --------->AHL20(2)       <---------ANAC55(2)   atagcagatatccgaaccaaataattttttatcataatttcggtaagatttttgaaaaagcaaaaaaatcgattaaccaaattcgcttacctaattttaa  17506300                                                                                           <---------At4g35610                                   ----------->GT1                                         --------->At4g35610                              ---------->DOF2                        ------->GAMYB--------->At5g28300                           ------>ZmHOX2a(1)                       <---------At5g28300    <---------RAP2.3(1)                           --------->AtLEC2               <------MYB46(1)        ----------->GT1                       <---------ARR14(2)                 <------MYB83          --------->ZAT6        ----------->GT1--------->ARR14(2)                 ----------->GT1      <---------At5g28300     ---------->DOF2   <---------ARR11(3)                --------->MYB59      <-----------GT1     --- -----TOE2(3)          --------->ARR11(3)           --------->AHL20(2)     <---------ARR11(3)------>NtERF2 -----TOE1(3)         --------->CCA1(1)          --------->ANAC46 <---------DOF5.7(2)    <---------RAP2.6(2) --AHL20(2)           --------->RVE1(1)      <-----------GT1      --------->MYB52(1)    --------->RAP2.6(3)   ggtttgcaaaaggaaatactctaaatatcctgcaaagaggcaaaattttacacataaatttggtaaattaacggcgagatttacagtaatttcggctcca  17506400                                                                                                 ----                                                                                                <----                                                                                               ------                   <-----------GT1                                                             ------               <---------AHL20(2)                                                              ------               --------->AHL20(2)             <------NtERF2                                    ------               --------->AHL20(1)             ----------------->AGL3                          -------         ------------>CBF                     ----------------->AGL2                        ------>NtERF2        ------>NtERF2                         >>>>>>>>>E2Fd                                --------->ANAC58        --------->LBD16                       >>>>>>>>>E2Fc                                --------->ANAC46       --------->ANAC58                      ------>NtERF2                                 --------->ANAC58       --------->ANAC46 ------>MYB46(1)     --------->ANAC58                               <---------ALFIN1       --------->ANAC58 ------>MYB83        --------->ANAC46                              --------->SPL7      <---------LBD16 <---------MYB59       --------->ANAC58        ------------>CBF     <---------ALFIN1    --------->ANAC46  <---------MYB46(2)   <---------LBD16     ---------->DOF2  <---------AHL20(2)<-- ------->DOF2 --------->AHL20(2)    ------------>CBF    <---------GLK1(2)   ------>ZmHOX2a(1) -------   aaaaacaccccgccaattttattaccaaacccattcacttcaattcgcgccaaaactagaatcccaaaagaccaattcctatttaaaacccctacgcccc  17506500                                                                                         --------->GLK1(2)                                                                                <-------GAMYB   <---- ----->MYB46(3)                                                                 --------->At5g28300 -----ALFIN1                                                                   ----------->GT1  <---- --->ANAC58                                                                   <---------ANAC46 ------ --->ANAC46                                                                  <-------TEIL--------->ARR14(2) --->ANAC58                                                               --------->CCA1(2)  -------- >NtERF2 ------>ZmHOX2a(1)                                        <---------TGA2(2)      <---------ARR14(2) -->DEAR3(1)                                 <-----------------AGL1 <---------ANAC46  ------->GAMYB -------ALFIN1                          <----------DOF2          ----------->HVH21 --------->MYB52(1) -->RAP2.3(3)                        ------>ZmHOX2a(1)           ----------->TGA1<---------MYB52(1)   ccactctcatcctccattttcgcctctctcttccctctcctcctttcttcccaaatggccattgttgatgacgcagagatgcggttaaccgaatccgaag  17506600                                                                                            ---------                                                                                            <--------                                 <---------ARR14(2)                                         ---------                                 <---------GLK1(2)                                          <--------                                 --------->ARR11(3)                                         <--------                                 <---------ARR11(3)                                <---------ZAT14  <                          <-------GAMYB                                            --------->ZAT14 --                         ------>ZmHOX2a(2)                                     --------->AtMYB61  ---                        <------ZmHOX2a(2)                                     <---------MYB55(2)  <--      <---------GLK1(1)--------->ARR11(3)                  ------>ZmHOX2a(1)  --------->MYB46(3)  ---   <---------ANAC46    <---------ARR11(3)              ------->TEIL   --------->YAB1        ------->TEIL -----At4g35610     <---------TOE1(2)        <---------AHL20(2)      --------->At4g35610   <---------GLK1(2) -----ZAT2        --------->TOE1(2)         --------->AHL20(2)       <---------At4g35610   <---------ARR14(1) --->GLK1(2)     ------>ZmHOX2a(2)      --------->LBD16<---------ARR14(2)    -------->P    <---------CCA1(2) ->LBD16   <---------At4g35610   --------->ARR14(2)    --------->ARR14(2)  --------->MYB46(3)     <--   ctgtttcgagttccgatgatcgtaagatcgttgcagatactcccgattttatagacgaatcctctctagtcatcagaacaaccactggagtccgaatctc  17506700        <---------DEAR3(1)       <---------LBD16      --------->LBD16     <---------ATERF1(2)     --------->ATERF1(2)    --------->DEAR3(2)   --------->MYB52(1) >GLK1(2) -ARR11(1) >ARR14(2) ---ARR10--------->LBD16                          --------->ARR14(2)                               -- -ARR14(2)<------NtERF2                        <---------TOE1(2)                                <---- ----------DOF2                                <---------TOE2(2)---------->DOF2                 <---- ------->AGP1                         <---------MYB59       --------->LBD16                 <-------- ------>At4g35610                     ------>ZmHOX2a(2)     ------>NtERF2           <---------AtMYB61 -------At4g35610                   <---------AGP1<---------ARR14(2)             <---------ZAT6 <---- ------>ZAT2            --------->WRKY38(1)<---------LBD16<---------LBD16    --------->ICU4 <-------- -------ZAT2  ---------->DOF2       ------->TEIL<---------MYB46(3)      ----------->GT1   <----------   agctctaccggcggagcaaagccttgttgactccgatggatctaactcggaggttacgcttccggcgaaagacgaggtaattagtgatggttttacttgt  17506800   ---------->DOF2                                                                             ------ ------->ZAT18          <-------TEIL                                                          <------ -----ANAC58        <---------YAB1                                                         <---------YAB1 -----ANAC58     <---------ARR14(2)                                                 ---------->DOF2 -ANAC58         --------->GLK1(2)      --------->GLK1(2)                        ---------->DOF2   -- -----ANAC46     --------->ARR14(2)    <---------GLK1(2)           --------->ARR11(3)      --------->ICU4 -ANAC58        <---------GLK1(2)  --------->At4g35610  --------->GLK1(2)   --------->GLK1(2) ------- -GT1      ----------->GT1         <---------At4g35610 <---------ARR14(2)  <---------GLK1(2)---------   gtgaacaaagagattgtagaatctgattcatttagggagcagaatctagagattggagaacctgatttagatgttgagaatcgcaaagaagcgatgatta  17506900                                                                                                   --                    <-------GAMYB                                             --------->ARR14(2)   --                   <---------MYB46(3)                                         <---------ARR14(2)   <- --->ATHB12       <---------AtMYB61               --------->ATHB12         <---------ZAT6  <---------MYB46(3) ---YAB1     --------->GLK1(2)                   <---------YAB1      <---------ZAT6      <---------ANAC58 ------->ATHB12 <-----------RAV1(1)              --------->ICU4<---------TOE2(3)         <---------ANAC58 -->ICU4   <---------HSFB2a(1)         <---------ANAC58        <---------TOE1(3) --------->TOE2(3)<-- >YAB1     --------->HSFB2a(1)         <---------ANAC58   <---------ZAT6--------->ALFIN1 <---------ANAC46   ttgattcgatagaaaattctgtggttgaaattgtttcaagtgcttctggtgatgattgtaatgttaaggtagaggtagtggaacctgaattgcttgttga  17507000             ---------->DOF2                             <---------MYB46(3)        <--------P                                     <-------GAMYB       <-------GAMYB                                  <-----------RAV1(1)      <---------MYB46(3)        <---------WOX13(1)<---------GLK1(2)      --------->MYB55(2)        <---------YAB1    --------->ARR14(2)     <---------AtMYB61        -------->HAHB4      --------->ARR11(3)    <---------MYB52(1)        --------->ATHB12    <---------ARR14(2)  <-----------RAV1(1)        <---------YAB1      --------->HSFB2a(1)                   <---------YAB1 ------->GLK1(2)             --------->ICU4      <---------HSFC1(2)                 <--------P ------->ARR14(2)            <---------ATHB12    --------->HSFC1(2)             <---------ANAC46 --------ARR14(2)      >>>>>>>>>TBF1             <---------HSFB2a(1)           <---------LBD16 -------GLK1(2)     >>>>>>>>>TBF1<---------MYB46(3)--------->GLK1(2)     <---------At4g35610   gaatctggtggttgctaaagaagaagaagaaatgattgttgattctatagaagattctgttgttgaaattgtttcaactgcttcgggttgtgattgtaat  17507100  Previous    Next  AGI:  At5g43530.1    Description:  SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein. Identical to Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Arabidopsis Thaliana] (GB:Q9FIY7); similar to RAD5, ATP binding / DNA binding / helicase/ protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G22750.1); similar to hypothetical protein OsI_014466 [Oryza sativa (indica cultivar-group)] (GB:EAY93233.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71217.1); similar to hypothetical protein OsJ_013422 [Oryza sativa (japonica cultivar-group)] Range:  from: 17506555    to: 17512058    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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