Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                  <--                                                                                                 ----                                                                                             <-------                                                                                             --------                                                                                           <---------AHL20(2)                                                                                          --------->AHL20(2)                    --------->ANAC58                                                  <---------AHL20(2)                    --------->ANAC58      ----------->GT1                             <---------AHL20(1)       --------->ARR11(3)           <---------YAB1                                    --------->AHL20(2)       <---------ARR11(3)         <---------ICU4               <---------DAG2         --------->AHL20(1)       <---------GLK1(2)   --------->CCA1(2)                   <----------DOF2       --------->YAB1     <---------TOE2(3)    --------->ARR14(2)        <---------AHL20(2)               --------->AHL20(2)     <---------TOE1(3)    <---------ARR14(2)       --------->AHL20(2)                <---------AHL20(2) --->DAG2          --------->DAG2 --------->YAB1--------->AHL20(2)              --------->YAB1   ---- --->DOF2         ---------->DOF2--------->ICU4 <---------AHL20(2)          <---------AHL20(2)<------   gtgatttaagattttgttagaaaagcaagataggcatcatgagttagtatatatataatatagaactttttgatatttttaatcaaattatattatatat  17505000                       <---------AHL20(2)                      <---------AHL20(2)        ------>ZmHOX2a(1)   <---------AHL20(2)        --------->LBD16--------->AHL20(2)        <---------HSFB2a(2) --------->AHL20(1)        --------->HSFB2a(2) --------->AHL20(2) ------>ATHB12     --------->AHL20(1)                                                     --------->ICU4 -------AHL20(2)   --------->AHL20(2)                                              <---------ANAC58 ----->ICU4        <---------AHL20(1)                                              <---------ANAC58 --AHL20(1)       <---------AHL20(2)                                           <------------CBF ->AHL20(1)   <---------AHL20(2)             --------->YAB1                <---------ANAC55(2) ----->AHL20(2)<---------AHL20(2)            ----------->GT1  ---------->DOF2<---------AHL20(2) ---AHL20(2)  --------->AHL20(2)  --------->ALFIN1--------->ICU4           --------->ANAC55(2)   ttattagttcctcgaattaaatattttaaataaaatgtgggcatcaatagtaatttttgaaatctaaagttttaaacatgtaattgtttgcacttattag  17505100                                  <---------YAB1                                  <-----------GT1                                 --------->AHL20(2)                              <<<<<<<<<MYB98                         --------->MYB52(1)                             --------->ANAC58                     <---------ARR11(3)           --------->AHL20(2)    --------->ANAC46                     <---------AHL20(1)           <---------AHL20(2)    --------->ANAC55(1)          <-----------TBP<-----------GT1     --------->AHL20(2)         --------->ANAC55(2)        <---------------AGL15 <---------ARR11(3)  <---------AHL20(1)    ----------->GT1        --------------->AGL15 <---------GLK1(2)   --------->AHL20(1)    --------->YAB1              <       <---------YAB1--------->AHL20(1)      <---------AHL20(2)         --------->ANAC58       <-----     <-----------GT1----------->TBP--------->YAB1--------->YAB1       --------->MYB52(1)       <----- ------->TEIL   ------------>CBF <---------AHL20(2)<---------YAB1   <---------MYB52(2)      <--------   atgtatattactatttataccaatatataacagattttaataactaaaaaattataattttaaaacaaaaacaaacgtaatatgttactaaattttactt  17505200                                        <-----------GT1                      <---------ICU4  xxxxxxxx                                   --------->AHL20(2)                <---------YAB1   --------->YAB1 -----------GT1                    ----------->TBP                 <---------ICU4  <----------DOF2 ----DAG2                   <-----------GT1<---------AHL20(1)     --------->ICU4  <---------ANAC58 -----DOF2   --------->TOE2(3)   <----------DOF2               --------->AHL20(2) <---------ANAC58 ---GT1     ----------->GT1--------->AHL20(2)                  ----------->TBP<------------CBF-------   tataacaaaataaaacgtttaactgaaaattaactctttatataacatatttatctacagagtctataaatatgactaaatattgctttaatactccaga  17505300                                   --------->AHL20(1)                                   --------->ARR11(3)                                   <---------ARR11(3)                                           <----                                   <---------AHL20(1)                                        --------                                   <---------AHL20(2)                                   <---------AHL20(2)                                   --------->AHL20(2)                                   --------->AHL20(1)                               <---------AHL20(2)     ----------->GT1                   <---------AHL20(1)                           --------->ICU4          <------------CBF               <---------ANAC58                         --------->YAB1 <---------AHL20(2)                        <---------ANAC46     ---------->DOF2     --------->AHL20(2)<----------DOF2           --------->ANAC58  --------->AHL20(2) xxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(2) --------->ARR11(3)  --------->ANAC58  --------->YAB1 -->LBD16           ------------>CBF<---------AHL20(2)<---------MYB46(3)          <---------ANAC58---   gcaaaacaaaagaaaaacgattcacaataatatttaatatattttctttgtgatattggttaatttctaccaagaaatgaagttgcctattatattctta  17505400                                             <------ZmHOX2a(1)     <---------ICU4                                             --------->YAB1        --------->YAB1                                            <---------YAB1         <--------HAHB4                                           <---------TOE2(3)       --------->ATHB12                                      <---------AHL20(2)          --------->ICU4                                      --------->AHL20(2)          <---------ATHB12                                     --------->AHL20(2)           <---------YAB1                                  --------->AHL20(2)            --------->YAB1     <---------AHL20(2)           <---------AHL20(2)           <---------YAB1                       <    <---------AHL20(2)           <---------AHL20(2)           <---------AHL20(2)                 <---    --------->AHL20(2)           <---------AHL20(1)           --------->AHL20(2)                 ---- -------GT1                      --------->AHL20(2)          --------->YAB1                     <---- ->TOE2(3)                   --------->AHL20(2)             <---------YAB1              --------->GLK1(2) ------>ZAT6              ----------->GT1 --------->YAB1 --------->ICU4              <---------TOE2(3)   actctattaatttttgtttcttcatgtaagtttaaattatttaattaggataatgtgtcagtattataatcattacaaaaactgtttaagaatttgatat  17505500                                                                                                    <                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                               xxxxxx                                                                                               <-----                                                                                              xxxxxxx                                                                                              ------>ZmHOX2a(2)                                                                                              <xxxxxx                                                                                         xxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                             <---------ZAT6                            ==============HOX2a_HOX2a                       <---------ICU4    ------>ZmHOX2a(2)                             <----------DOF2                    --------->REM1(1)  ------->TEIL                                    ------>ZmHOX2a(1)           <---------YAB1              <---------ARR14(2)                             <xxxxxxxxxxxxxx ----------DOF2    <-------TEIL        --------->ARR14(2)                             xxxxxxxxxxxxxxx ------ARR11(3) <------MYB46(1)        <---------AGP1                             --------->ANAC58xxx ----->ARR11(3) <------MYB83           --------->ARR11(3)         <----------DOF2 --------->ANAC58xxx -----CCA1(2)  --------->MYB59  <---------YAB1                <---------GLK1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)   atcttttgaaaatttgataggtacatcagtacttataaatggatctagtgatgaagagagaacatattctttcagtccaagagcaagtccttttgatcca  17505600                                                          <---------ANAC58                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                        <---------ARR11(3)                                                        --------->ARR11(3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  <---------ANAC46                                                 <---------LBD16                                                 --------->ZAT18                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                               <---------WOX13(1)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                              <---------ANAC58                                              <---------ANAC58                                             --------->ATHB12                                            <---------YAB1<---------ANAC58                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ZAT14              xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxsmallRNA(i)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----->ANAC58                    <---------MYB46(3)--------->LBD16 ----->ANAC46                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->ANAC58<---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----ALFIN1  --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->KAN4(2) xxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <----------TaMYB80 xx>smallRNA(i)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <--------P xxsmallRNA(i)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    ----------->HVH21--------------->AtSPL3 x>smallRNA(i)     <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC46               -   cgctcactgaaccaagaacttaaaattgggagaattggttactgttttgattgcgcaagagcttgtatgagacggggtaagtatattcgtacatgtagtt  17505700                                                                                           <xxxxxxxxx                                                                                <---------AHL20(1)                                              ----------->GT1                   --------->AHL20(2)                                              --------->YAB1                    --------->AHL20(1)                                        --------->MYB59             --------->YAB1  <-----------GT1                                   <---------AHL20(2)               --------->AHL20(2)    <----------DOF2             ---------->ID1       --------->AHL20(2)             --------->YAB1 <---------AHL20(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     ----------->GT1          <---------AHL20(2)         <----------DOF2    <---------ZAT6--------->ARR11(3)  --------->TOE2(3)--------->AHL20(2) --------->DOF2         <---------YAB1  <---------TOE2(3)    <---------ICU4    --------->YAB1    <---   ttgaaagaaaactttgtcgttacagtattagtgatattaaataaggtattgtaattttgttaaacattaataaaaaacaaattatattactgcttaatgt  17505800                                                                       <---------AHL20(2)                                                                      --------->AHL20(2)                                                              --------->ANAC46                      <---------ICU4                       --------->ZAT14                      --------->YAB1                       <---------ZAT14                     <---------ATHB51                      --------->ZAT18                     <---------ATHB12                    --------->ZAT18        <---------HSFB2a(2)                     --------->ICU4                      <---------ZAT18        --------->HSFB2a(2)                   --------->YAB1        --------->TOE2(3) <---------ZAT18     <---------LBD16                <-----------GT1    --------->YAB1 <---------AHL20(2)--------->TOE2(3) --------->YAB1 xxxxxxxxxxxxxsmallRNA(si3)   ----------->GT1    --------->AHL20(2)--------->YAB1----------->GT1 ----TEIL   <----------DOF2------->TEIL--------->GLK1(2)<---------ANAC46   <---------AHL20(2)--------   tcatccatgcccttctttttacaataatgaacatgtataataatctaaaaattttatagtgtgcacttaacataaaatttatctggaaacataagtcatt  17505900  Previous    Next  AGI:  At5g43525.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43510.2); contains domain PROKAR_LIPOPROTEIN (PS51257) Range:  from: 17505377    to: 17505744    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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