Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->TGA1a                                                                            =========================                                                                            <---------bZIP60(2)                                        --------->ANAC55(2)                 <---------ANAC58                          <---------ANAC55(2)                               <---------ANAC46                          --------->ANAC58                                  <---------TGA1a ---------                          --------->ANAC58                                  --------->O2    ---------                          --------->ANAC55(1)                               <---------O2  <---------AtLEC2                          --------->ANAC55(2)                     <---------WOX13(1)  <---------ANAC46                         *TSS       --------->YAB1               <------------CBF  <-----------RAV1(1)                    --------->AHL20(2)  <---------ANAC55(2)     --------->ATHB12 <---------ANAC46   -               <-------TEIL      ---------->DOF2               <---------YAB1 --------->ALFIN1  -----         <------ZmHOX2a(1)--------->ANAC46               <---------ANAC46   <---------ANAC58---------   caagaagaagaggaagattcaatttaagacggaactaaagataagtgtcgaagtttgtggtgtctgtgattgagagcgacgtgttgtgttgtgcaaggaa  17476100                        --------->ARR14(2)           <------------CBF ==========bZIP_DOF     --------->ARR11(3) >ANAC58 <---------YAB1 <---------ARR11(3) >ANAC58--------->AHL20(2)     ----------->RAV1(1)                                         --------->ANAC55(2) --------->DOF2       <---------TOE2(3)                           <-------TEIL             <---------ANAC55(2) ---->GLK1(1)    <----------DOF2                                 --------->GLK1(2)     --------->YAB1 >ANAC46<---------AHL20(2)    <---------ETT(1)                  <---------ARR14(2)  ---------->DOF2   ttcaaagtattaaaattgacttttaagatattccgacagaaacaaaaacagaattgataagagggagattcagtttaagacagaactaaagataagtgtc  17476200                                  <-----------RAV1(1)                           <---------ANAC58                           <---------O2                           ===================================bZIP_DOF                           --------->O2                                      --------->ANAC46                           --------->TGA1a                                   --------->ANAC58                           <---------TGA1a --------->ANAC58            <---------ANAC46                           <---------ANAC58--------->ANAC46          <---------ZAT14                           <---------bZIP60(2)                       --------->ZAT14          <------                   --------->ATHB12      <---------AtLEC2         <---------ANAC46    <---------TOE2(3)                 <---------WOX13(1)  <---------ANAC46     --------->YAB1     --------->ANAC58<-------               --------->ATHB12 <---------ANAC46   ---------->DOF2<---------ANAC58   ---------->DOF2              <---------YAB1 --------->ALFIN1  --------->GLK1(1)  <---------ANAC58  <---------AHL20(2)        <---------ANAC46   <---------ANAC46--------->ANAC58 <---------YAB1 <---------AtLEC2  --------   caagtttgtggtgtctgtgattgatagcgacgtgttgtgttgtgcaaggaattcaaagtatcaaaattgagtgttgtgcaaggaatttaaagtatttaaa  17476300                                                                ---------->DOF2                                                              <---------AHL20(2)                                                              --------->AHL20(2)  ---------->DOF2                                                          <---------AHL20(2) <---------------AGL15                ----------->RAV1(1)                       <---------AHL20(1) --------------->AGL15               <---------ETT(1)                           --------->AHL20(1) --------->TOE1(3)  <----------DOF2                                         --------->AHL20(2) --------->TOE2(3)  ----- ---AHL20(2)--------->GLK1(2)                            --------->AHL20(2) ----------------->AGL3 -- --AHL20(2) <---------ARR14(2)                     ----------->GT1    ---------->DOF2          ------ ->AHL20(2)<---------GLK1(2)            --------->ZAT6   <---------AHL20(2)------->TEIL       -------   ttgacttttaagagattccgacagaaacaaaaacagaattgaagactagaagattgaaaataaattaaaagaaaaagaaccttaaaaagaaaacaataaa  17476400                                                             <---------At4g35610                                                             --------->At4g35610                                                            <xxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                           <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                          <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                          <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        ----------->RAV1(2)                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        --------->At4g35610                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->LBD16                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxsmallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------ANAC58                            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ANAC46                            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------ANAC58<xxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------LBD16  ------->PIF5                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <-------TEIL     <-------PIF5                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->ALFIN1  --------->LBD16             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <---------GLK1(1)<xxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                -   <xxxxxxxxxxxxxxxxsmallRNA(le3)                <----------DOF2                                 <---   <---------At4g35610<xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       -----  ----------->ARR10<xxxxxxxxxxxxxxxxsmallRNA(s)<---------ZAT18   --------->REM1(1)           <------- ---->DAG2        <------ZmHOX2a(2)            --------->ZAT18  <-------TEIL<------------CBF -------- ------->ALFIN1  <---------ARR14(2)        <xxxxxxxxxxxxxxxxsmallRNA(se3)  *TSS              -------- ---->DOF2       --------->ARR14(2)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->WOX13(1) -->YAB1<---------ANAC46           --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------------>CBF   agtggagatgcggggtatcgatccccgtgcctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgaattgaacgagtagcaattata  17476500                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                                  <---------ANAC58                                                                                  <-------GAMYB                                                                                 <---------MYB46(3)                                                                                 --------->MYB52(2)--                                                                                 --------->MYB55(2)--    ----------->HVH21                                                            <------MYB46(1)  --- --------->ARR11(3)                                                              <------MYB83   ----- <---------ARR11(3)                                                        <---------ANAC58     <---- -------->CCA1(1)                                                          <---------ANAC58 <-------- ------AHL20(2)               ------------>CBF                        <----------DOF2      --------->ANAC58 ---->AHL20(2)                <------ZmHOX2a(2)        <---------YAB1<---------DAG2<---------------AtSPL8 --AHL20(2)                 ----------------------->TaNAC69(2)     ------>NtERF2<---------AtMYB61---- ->AHL20(2)           --------->ZAT14       ------->TEIL          --------->DEAR3(1)       --------->ANAC58 ->YAB1          ---------->DOF2           <---------CCA1(2)    --------->SPL7 <--------P  --------->ANAC46   taatatctaacgcgttttgtaaagtatagtagatcaatttttcatgtatcttatattcttattcagtaccgcctttgccttgttggttgtaccaagtaac  17476600                                                   <---------YAB1                                                 <---------ICU4                                                 --------->YAB1                                                <---------YAB1                            --------->YAB1    <--------HAHB4                            <---------ICU4    --------->YAB1                            --------->ATHB12  <---------AHL20(2)                            -------->HAHB4    -------->ATHB1                           <---------ATHB12   -------->HAHB4             ------>ZmHOX2a(2)                <---------ICU4           --------->ARR11(3)                 --------->ATHB51           <---------ARR11(3)                <---------ATHB51           <---------ARR14(2)          ----------->GT1      <---------AtLEC2--------->ANAC55(2)    --------->ICU4 ---->MYB83--------->ARR14(2)         ----------->GT1<---------AHL20(2) ---->MYB46(1)  --------->AHL20(2)   <---------ARR11(3)                                             - -------->RAV1(1)     <---------ANAC55(2)    <---------YAB1                          <-------TEIL---- ---->MYB46(3)  <---------AHL20(2)   --------->ARR11(3)  ----------->GT1 --------->ZAT14         ---- -----MYB52(2)<----------DOF2    ---------->DOF2--------->ICU4           --------->ZAT18         ---- -MYB52(2) ------->TEIL    --------->ICU4 --------->AHL20(2)             <---------ZAT18     >>>>>>>> --->GAMYB <---------AGP1  <---------YAB1 <---------AHL20(2)             <---------ZAT14--------->AtLEC2   caacatttgtatggatctttaaatacttaatgattaaaagatgtttaattattattattttgttatatagcttagtgctctaaaatgttcatgaaaacca  17476700                 --------->STY1(2)             --------->YAB1                               <-----------GT1          --------->YAB1                      ----------->GT1      <----------DOF2         <---------At5g28300      <---------AHL20(1)           --------->AHL20(2)  <---------YAB1                     <---------- ---------->GT1  <---------STY1(2) <---------AHL20(2)--------->AHL20(2)                -------------- -->MYB83<---------YAB1           <---------AHL20(2) <---------AHL20(2)     <---------AHL20(2)   <--- ---->P --------->AHL20(1)        <---------AHL20(1)<---------AHL20(2)     --------->AHL20(2)    ---- -->MYB46(1)<---------YAB1        --------->AHL20(2)<---------AHL20(1)     <---------AHL20(2)    <--- >MYB2--------->AHL20(1)      <---------AHL20(2)    --------->AHL20(2) <---------YAB1<---------AHL20(2)   acttgaaaaatattatgatagctagtttgtattcaatttaatttgtgtttgtaaattatttttcattttctttactattaattttgttttatttaccatt  17476800              --------->ARR14(2)              <---------ARR14(2)             ------>MYB83             ------>MYB46(1)        <---------PCF5     --------->ANAC46     --------->ANAC55(2)                         <---------ETT(1)    <---------LBD16                     <---------ARR14(2)   <-----------GT1                      --------->ARR14(2) -GT1<---------ANAC55(2)      ------->TEIL    <---------ARR14(2) ->AtSPL8  <---------MYB59------>MYB46(1)     --------->ARR14(2)         <----------DOF2 ------AHL20(1)           ------>MYB83 <---------GLK1(1)                 <---------DAG2 ----->AHL20(2)         --------->TOE2(2)   --------->LBD16           <-----------GT1 ------AHL20(2)         --------->TOE1(2) <---------LBD16           <---------AHL20(2)   ttattttacgggaccaaatccgactacctacgaatgttagtaaatccggttccgacaaaattacacatatataaactttttttttctgaaatatggttct  17476900                           --------->ARR11(3)                   ----------->GT1                                                               <---             --------->GLK1(2)                             --------->ANAC58                  <-------            <---------ARR14(2)                      --------->ARR14(2)                       --------            <---------GLK1(2)              <---------AHL20(2)                                --------            --------->ARR14(2)            --------->AHL20(2)                                 --------            <---------ARR11(3)      ------>ZmHOX2a(1)      --------->ANAC58           ----------->GT1          ----------->ARR10--------->AHL20(1)       <---------ARR14(2)            --------->ETT(2)   <---------AHL20(2)      <---------AHL20(1)       <---------GLK1(2)       <----------DOF2 ---------   catatttaaaccaagattctcaagttaaaaatattgtcctaatatttaatccaagattcccaagctaaaaatatggttcttttgtcgaaagtaaaaaagt  17477000  Previous    Next  AGI:  At5g43450.1    Description:  2-oxoglutarate-dependent dioxygenase, putative. similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G43440.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66433.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 17474353    to: 17476025    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g43455.1    Description:  pre-tRNA. tRNA-Ala (anticodon: AGC) Range:  from: 17476403    to: 17476475    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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