Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->CCA1(2)                                                                   <---------ARR11(3)                                                                   <---------ARR14(3)                                                                   --------->ARR11(3)                                                                   --------->ARR14(2)                           --------->ATHB12                        <---------ARR14(2)                           <---------ICU4                          --------->ARR14(3)     ------>ZmHOX2a(2)                           --------->YAB1                      ==================================HOX2a_HOX2a                           -------->ATHB1                      <------ZmHOX2a(1)        <---------ARR11(3)            --------->ATHB12    <---------YAB1                <------MYB46(1)           --------->ARR14(2)            --------->YAB1<---------ATHB12                    <------MYB83              <---------ARR14(2)           <---------YAB1 <---------YAB1                    <--------P                  <---------AGP1         --------->YAB1   --------->ICU4                   <---------MYB52(1)           --------->ARR11(3) -------->DOF2      <------ZmHOX2a(2)             ---------->ID1 ----------->ARR10     <---------CCA1(2)   tcaaaggagaagaatgatagagatcgaaatcattgttataaacaaatctcttgttgttatcggtaggaagatattggttcttgacaactggatcttgttc  17475600                                                                                                 ----                                                                                                 <---                                                                                         <---------ANAC58                                                                                         <---------ANAC46                                                                                        <-------TEIL                  <----------DOF2                                                    --------->ZAT2           --------->ZAT6                            --------->ATHB12                <---------At4g35610           <---------ALFIN1                          <---------ICU4                  <---------ZAT2--    --------->TOE1(2)                               --------->ICU4                   --------->At4g35610    --------->TOE2(2)               ----------->GT1 <---------YAB1                   ----------->RAV1(2)    --------->TOE1(3)         --------->HSFB2a(2) --------->YAB1       --------->ARR14(2)<---------ANAC58   --------->HSFB2a(1)  ------>ZmHOX2a(2)         <---------ICU4 ----------->GT1   <-----------RAV1(2)   <---------HSFB2a(1)--------->ARR11(3)---------->DOF2<---------WOX13(1)  --------->LBD16   <-------   atgaaaccttcgaacactctctttgatctcttcaagaacagttaaaggaacatcatgattgatcacttggaaaaatccccaattctcagctgcgtctttg  17475700                                                    <---------WOX13(1)                       <-------                                                  --------->ATHB12                          <-------GAMYB                                         --------->LBD16                       <---------GLK1(1)                                        <---------TOE1(1)                      --------->GLK1(1)                                     ------>ZmHOX2a(2)                         --------->CCA1(2)                                    <------ZmHOX2a(2)                         --------->ARR11(3)                                    --------->GLK1(1)                      <------NtERF2   <--------- ----->ARR11(3)                <-----------GT1   <---------YAB1           --------->LBD16  <---------MYB46(3) ------ARR11(3)   <---------ANAC46  <---------GLK1(1)          <---------AtMYB61        --------->ARR11(3) ---->ZmHOX2a(2)  <---------ANAC58 --------->ARR11(3)     <---------DEAR3(1)  <---------ARR11(3) ---DOF2          <---------ANAC58 <---------ARR11(3)    --------->SPL7 <---------LBD16 <---------ARR11(3)   atcttcgaaatgacaacgtttcttgaagatgtgttacgatctccgaggtcgatgattgggacggtgaggtttaagccggagatatcagaaggtctgttgt  17475800                                                                                                    <                                               --------->RAP2.6(3)                       ---------->DOF2                                          <---------MYB52(1)             ------>ZmHOX2a(1)    <------                                         <-------GAMYB                   ============================                                   <---------HSFC1(2)           ------>ZmHOX2a(1)      --------->CCA1(2)  --------->AHL20(2)               --------->HSFC1(2)           <----------DOF2     ----------->GT1 - --MYB52(1)                        <---------HSFB2a(1)--------->DEAR3(1) ============================ --RAV1(1)                       <------ZmHOX2a(1)   <------NtERF2     ----------->RAV1(2)    <------   ttgataaaatagaagaagggacatgaaacatgctaggaacttcggttatttcggcatcgacgagtcctttcactcctgtcttcgtcgagataaaagtcgt  17475900  ------>ZmHOX2a(2)                                                --------->ARR14(2)  ----------->GT1                                                  --------->ARR11(3) <------ZmHOX2a(2)                                                 <---------ARR11(3) ---------ARR11(3)                       <------------------------ANAC81 ---ANAC58                            --------->ICU4    <----------DOF2  <---------MYB52(1) =======HOX2a_HOX2a        <---------GLK1(1)    <----------DOF2    <---------ARR14(2) -------->ARR11(3)         --------->GLK1(1)  ---------->ID1       <---------GLK1(2) ========HOX2a_HOX2a       --------->ARR14(2)<-----------GT1<----------DOF2   <-----------RAV1(1) ---ANAC58   <------ZmHOX2a(2)    <-----------HVH21  <-----------GT1--------->GLK1(2)   gagatcgtttaaacgatcgattttttcagaattctctgtcatgtttttttctttttttctttctttcaagattctgttttttgttgttgttctgaagact  17476000                                                                            <---------ANAC46                                                                            --------->TGA1a                                                                            <---------O2                                        --------->ANAC55(2)                 <---------TGA1a ---------                          --------->ANAC58                                  <---------bZIP60(2)                          --------->ANAC58                                  <---------ANAC58---------                          --------->ANAC46                                  <---------ANAC58---------                          --------->ANAC55(2)                               --------->O2  <---------AtLEC2                          --------->ANAC55(1)                     <---------WOX13(1)  <---------ANAC46                         *TSS       --------->YAB1               <------------CBF  <-----------RAV1(1)                    --------->AHL20(2)  <---------ANAC55(2)     --------->ATHB12 <---------ANAC46   -               <-------TEIL      ---------->DOF2               <---------YAB1 --------->ALFIN1  -----         <------ZmHOX2a(1)<---------ANAC55(2)            <---------ANAC46   =========================   caagaagaagaggaagattcaatttaagacggaactaaagataagtgtcgaagtttgtggtgtctgtgattgagagcgacgtgttgtgttgtgcaaggaa  17476100                        --------->ARR14(2)           <------------CBF >ANAC58 <---------YAB1 --------->ARR11(3) >ANAC58<---------AHL20(2)     ----------->RAV1(1) >ANAC46--------->AHL20(2)    <---------ETT(1)                                             --------->ANAC55(2) --------->DOF2         <---------ARR11(3)                        <-------TEIL             <---------ANAC55(2) ---->GLK1(1)    <----------DOF2                                 --------->GLK1(2)     --------->YAB1 ==========bZIP_DOF   <---------TOE2(3)                         <---------ARR14(2)  ---------->DOF2   ttcaaagtattaaaattgacttttaagatattccgacagaaacaaaaacagaattgataagagggagattcagtttaagacagaactaaagataagtgtc  17476200                                  <-----------RAV1(1)                           ===================================bZIP_DOF                           <---------bZIP60(2)                           <---------ANAC58                           <---------O2                                      --------->ANAC58                           --------->TGA1a                                   --------->ANAC58                           <---------ANAC58                            <---------ANAC46                           <---------ANAC46--------->ANAC58          <---------ZAT14                           --------->O2    --------->ANAC58          --------->ZAT14          <------                   --------->ATHB12      <---------AtLEC2         <---------ANAC58    <---------TOE2(3)                 <---------WOX13(1)  <---------ANAC46     --------->YAB1     --------->ANAC46--------               --------->ATHB12 <---------ANAC46   ---------->DOF2<---------ANAC46   ---------->DOF2              <---------YAB1 --------->ALFIN1  --------->GLK1(1)  <---------ANAC58  <---------AHL20(2)        <---------ANAC46   <---------TGA1a --------->ANAC46 <---------YAB1 <---------AtLEC2  <-------   caagtttgtggtgtctgtgattgatagcgacgtgttgtgttgtgcaaggaattcaaagtatcaaaattgagtgttgtgcaaggaatttaaagtatttaaa  17476300                                                                ---------->DOF2                                                              <---------AHL20(2)                                                              --------->AHL20(2)  ---------->DOF2                                                          --------->AHL20(2) --------------->AGL15                ----------->RAV1(1)                       <---------AHL20(2) --------->TOE2(3)               <---------ETT(1)                           --------->AHL20(1) <---------------AGL15  <----------DOF2                                         <---------AHL20(1) --------->TOE1(3)  ----- ---AHL20(2)--------->GLK1(2)                            <---------AHL20(2) ----------------->AGL3 -- ->AHL20(2) <---------ARR14(2)                     ----------->GT1    ---------->DOF2          ------ --AHL20(2)<---------GLK1(2)            --------->ZAT6   --------->AHL20(2)------->TEIL       -------   ttgacttttaagagattccgacagaaacaaaaacagaattgaagactagaagattgaaaataaattaaaagaaaaagaaccttaaaaagaaaacaataaa  17476400                                                             --------->At4g35610                                                             <---------At4g35610                                                            <xxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                          <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                          <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        ----------->RAV1(2)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        --------->At4g35610                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->LBD16                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ANAC46                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------ANAC58                            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ANAC46                            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       <---------ANAC58<-------PIF5                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------LBD16  ------->PIF5                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <-------TEIL     <xxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ALFIN1  --------->LBD16             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------At4g35610<xxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                -   <---------GLK1(1)<xxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---   <xxxxxxxxxxxxxxxxsmallRNA(le3)                <----------DOF2                                -----  ----------->ARR10<xxxxxxxxxxxxxxxxsmallRNA(s)--------->ZAT18   --------->REM1(1)           <------- ---->DAG2        <------ZmHOX2a(2)            <---------ZAT18  <-------TEIL<------------CBF -------- ------->ALFIN1  <---------ARR14(2)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    -------- ---->DOF2       --------->ARR14(2)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  --------->WOX13(1) -->YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxsmallRNA(se3)  *TSS         ------------>CBF   agtggagatgcggggtatcgatccccgtgcctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgaattgaacgagtagcaattata  17476500  Previous    Next  AGI:  At5g43450.1    Description:  2-oxoglutarate-dependent dioxygenase, putative. similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G43440.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66433.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 17474353    to: 17476025    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g43455.1    Description:  pre-tRNA. tRNA-Ala (anticodon: AGC) Range:  from: 17476403    to: 17476475    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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