Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------AHL20(2)                                     --------->MYB46(3)                                    --------->ANAC58                                    --------->ANAC58                                    --------->ANAC46                                   ------->TEIL                                 <---------ZAT18                                 --------->ZAT18                                 <---------ZAT14                                                   --                          <----------DOF2 <---------AHL20(1)                                       <-                     --------->ARR11(3)   --------->AHL20(2)      --------->At5g28300    <xxxxxxxxxxx ----->ICU4          <---------ARR11(3)   <---------AHL20(2)     ----------->GT1        --------->ZAT6 -ZAT6        --------->GLK1(2)  --------->ZAT14           <----------DOF2            <-----------GT1   tatttggatttatgcgattctaagaactctttttgtgcacccaatttttttttgttattctctttcactgtaaaaaaaaaacttctcttaactctataga  17456900                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       --------->ANAC58                                                       --------->ANAC58                                                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                --------->ZAT2    --------->TOE2(3)                           <---------ZAT2<---------ALFIN1    --------->TOE1(2)                           <---------At4g35610                   ---------->DOF2    --------->TOE2(2)                           --------->At4g35610    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------>MYB83                                 <--------P   --------->ANAC58  <-------GAMYB ------>MYB46(1)                            <------MYB83   --------->ANAC58  <---------RAP2.6(3) ------->AtMYB61                            <------MYB46(1)--------->ANAC46 <---------MYB46(3) --------MYB59    ---------->DOF2          --------->MYB59 --------->bZIP60(2)<---------MYB52(1)    - xxxxxxxxxxxsmallRNA(si3)         <---------MYB52(2)  --------->ANAC46xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   accaaacctaagagtttacaaaaagaagacatagcaactaaaaatttggtagctcccaggcacgacactcgatgcaggccgttagaagaaaagaattttc  17457000                                                                          --------->AtMYB61                                                                         --------->MYB46(3)                                                                         <---------MYB55(2)                                                                         <---------MYB52(2)                                                                         --------->DEAR3(2)                                                                        ------->TEIL                ------>MYB46(1)                                      --------->ANAC58                -------->P                                           xxxxxxxxxxxxxxxx>smallRNA(i)                ------>MYB83                                        --------->SPL7              <---------MYB111(1)                             --------->YAB1         --------->ANAC46              <---------MYB59                                 <------------ATHB5     --------->DEAR3(1)              <---------MYB111(2)                             <--------ATHB1------>MYB83              <---------MYB46(2)                              <---------ICU4------>MYB46(1)       ---           <-----------GT1                                   <---------ATHB51--------->MYB46(3)  <---         ==========================HOX2a_HOX2a               --------->ICU4--------->MYB52(1)   -----         ------>ZmHOX2a(2)                                <---------------AGL15    <---------ATERF1(1)        <------ZmHOX2a(2)                                 --------------->AGL15   ----------->HVH21        ===========================HOX2a_HOX2a           ----------------->AGL1  --------->DEAR3(2)       <---------ARR14(2)                                ----------------->AG<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------ARR11(1)                                --------------->AGL15------->GAMYB   <------       --------->ARR11(3)                                <-----------------AGL3  <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->ARR14(2)                  <---------MYB52(2)<---------ATHB12<xxxxxxxxxxxxxxxxsmallRNA(i)       <---------AGP1         ---------->DOF2            ----------------->AGL3  --------->SPL7 -----       <---------ARR11(3)   <---------------AGL15        ----------------->AGL2  xxxxxxxxxxxxxxxxxxxx       <-----------ARR10    --------------->AGL15        <-----------------AGL2<-----------HVH21<----      <---------ARR14(1)    ------>ZmHOX2a(1) <---------TOE2(3) <---------------AtSPL8    xxxxxxxxxxx      <---------CCA1(2)    ----------------->AGL3       --------->ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->LBD16       ----------------->AGL2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxx   <---------LBD16         --------->TOE2(3) --------->MYB52(1) <---------------AtSPL3------>NtERF2  --------->MYB52(1)       ================================================MADS_MADS --------->ANAC58 --------->DOF2--------->MYB55(1)  ----------->GT1    <-----------GT1--------->ANAC58--------->ANAC58   aaaaaaccggatcttacctaccattacatcctaaaaacagtaagaactaacgatttttacccaataatggtacgaaccaacggtccgacgcctctctccg  17457100  <----------DOF2 <---------ANAC58 <---------ANAC58        <---------ARR14(2) -------->HVH21          --------->ARR14(2) ------MYB52(1)    --------->ORA47(1) ---->At4g35610   --------->MYB46(3) ---LBD16    <-----------HVH21                                      --------->LBD16 ---->LBD16<----------DOF2   ------>ZmHOX2a(1)        <---------ALFIN1                              < xxx>smallRNA(se3)--------->DEAR3(1)                ------->GAMYB  --------->HSFB2a(2)             <- -----At4g35610  <---------At4g35610   <---------At4g35610         <---------HSFB2a(2)             <- xxxxxxxxxxx>smallRNA(i2)<-----------ARR10         --------->MYB46(3)<---------MYB52(1)        <----- xxsmallRNA(i) <-----------GT1         --------->At4g35610        <---------LBD16              <-----   gtgactttccttccttttcaccggccaaatcctccctgaagagctgctctgtaaccacacttcttccttccggtagtctctctactccctctctgtaact  17457200                                                                                   ------>MYB83                                                                                   -------->P                                                                                   ------>MYB46(1)                                                                                ------->GAMYB                                                                                --------->MYB46(3)              --------------->AGL15                                            --------->ANAC58              <---------------AGL15                                            --------->ANAC58             <-----------------AGL2                                           --------->ANAC58             <-----------------AGL1                                           --------->ANAC58             <-----------------AG                                        --------->TOE1(2)          <----------DOF2                                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <-----------GT1        --------->TOE2(2)   --------->DOF5.7(2)--------->TOE2(3) ----------DOF2      <------MYB46(1)           --------->TOE1(3)   --------->TOE1(3) --------ANAC58      <------MYB83              <----------DOF2  --------->GLK1(1) ------>MYB46(1) --------ANAC58     --------->MYB59            --------->TOE2(3)<---------GLK1(1) <---------ALFIN1 ----ANAC58  ----------------->AG <-----------GT1   --------->MYB46(3)  ----------->RAV1(2) ----ANAC58  ----------------->AGL3    <----------DOF2---------->DOF2  -------->P ------>MYB83   tgctttgtaacccttttcaaatttggtaaacctgtgtaaccctttgaaactttaaccaaagactggaaaccctaacctgcaacccaaccccttaacccct  17457300                                                                                       <---------ARR14(2)                                                                               <-----------HVH21                                                                              --------->ANAC46                                --------->MYB46(3)                            <xxxxxxxxxxxxxxxxxxxxxx                                <---------MYB55(2)                         ------>MYB83--------->GLK1(2)                                <---------MYB111(2)                        -------->P  --------->ARR14(2)                               -------->P                                  ------>MYB46(1)                               ------>MYB46(1)                            --------->MYB55(1)                               ------>MYB83                              --------->MYB46(3)                           --------->ANAC46                              --------->DEAR3(1)                        ------->TEIL--------->TOE2(3)                    --------->AtMYB61                        <---------ARR14(2)                               <---------MYB55(2)                     --------->ANAC58                                    <---------MYB46(2)                     --------->ANAC46                                    <---------MYB111(2)                  <---------ZAT14<---------ALFIN1    <-------TEIL        <---------MYB111(1)        <                  --------->ZAT14------->GAMYB      <--------P           <---------ALFIN1      <xxxxx                  --------->ZAT18--------->AtMYB61----------->GT1       --------->MYB46(3)     ------                *TSS --------->ANAC58  ---------->DOF2          --------->At4g35610   <---------GLK1(2)   <-----------RAV1(1)  --------->ARR14(2)   ---------->DOF2    <---------At4g35610 <---------TOE1(2)   tactactgttgcaccatgagtacacgaatccccaaccacctcaaaggcaaagaggttgatagaggctgctctccaccaacccgtcgcagaatccgagcac  17457400                             ------>NtERF2                            --------->DEAR3(1)                            <---------ALFIN1                          <---------RAP2.6(3)                          ------>NtERF2                          <---------ATERF1(1)                         --------->DEAR3(1)                         --------->RAP2.3(3)                         --------->RAP2.3(2)                         --------->RAP2.6(2)                         >>>>>>>>>AtERF-1                         >>>>>>>>>AtERF-2                         <---------ATERF1(2)                       <---------DEAR3(2)                         >>>>>>>>>AtERF-5                   --------->GLK1(2)                         --------->ATERF1(2)                --------->ARR14(2)                         >>>>>>>>>AtERF-3               <---------TOE2(3)                         >>>>>>>>>AtERF-4              <-----------GT1                         --------->ANAC46         <---------ANAC46 <---------MYB46(3)                        --------->RAP2.3(1)       <---------MYB46(3)<-------GAMYB                        --------->ERF1            ----------->GT1 <---------DEAR3(1)          --------->AtMYB61<------NtERF2      <---------MYB46(3) <---------MYB52(1) xxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ------->TEIL ---------ZAT6      ---------->DOF2       ----------->HVH21 <---------ARR14(2) xxxxxxxxxxxxxxxxxsmallRNA(si3)        <-----------------AGL1   --------->LBD16                  ---- ----->RAV1(1)<---------At4g35610      ----------------->AGL1 <---------LBD16--------->GLK1(2)<------   cagagttagacacctctgctcttatagccgccaactctcttaccctgatgggtcgtttaacgaatccggcggttcaaagactctggtcactattcccttt  17457500                ------>ZmHOX2a(2)          ------>ZmHOX2a(2)              <---------ARR14(2)          <------ZmHOX2a(2)              --------->ARR11(3)         <---------AGP1              <---------ARR11(3)         <-----------ARR10              --------->ARR14(2)         --------->AGP1             ====================================HOX2a_HOX2a             =====================================HOX2a_HOX2a                                     ---      --------->MYB46(3)                 --------->ARR11(3)                                       <--     ------>MYB83  ---------->DOF2       <---------ARR14(2)                                    ------     -------->P<------ZmHOX2a(2)         --------->ARR14(3)                                   -------     ------>MYB46(1)                     <---------ARR11(3)                           --------->ARR11(3)    --------->MYB52(1)                   --------->ARR14(2)                           <---------ARR11(3)    --------->MYB55(1)                   <---------ARR14(3)                           <---------ARR14(2)   --------->MYB46(3)                   <---------CCA1(2)                           ----------->ARR10   --------->AtMYB61 --------->DAG2     <---------At4g35610                       <------ZmHOX2a(1) ----->YAB1  <------ZmHOX2a(1)         ----------->ARR10              <----------DOF2 --------->ARR14(2) ----DOF2<---------MYB52(1)         <-----------HVH21     <----------DOF2--------->ATHB12--------->AtLEC2   catgaccaaccgttaggatctaaaaggcaatgctatagggtcagatcttggtagagactgctttcaattctgctttgatttggaggaagacctgcaaaaa  17457600                                                                                          -----------                                                                                          -----------                                                                                          <----------                                                                                         <-----------                                                                                         ------>ZmHOX2a(2)                                                                                         ------------                                                                                         <-----------                                                                                         <-----------                                                                                       --------->ARR14(2)                                                                          --------->AtMYB61 <--------                                                                       <---------ALFIN1<---------ARR14(2)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         --------->DEAR3(2)            <---------ARR11(3)             <---------MYB59                             --------->MYB46(3) ------>MYB46(1) <--------        --------->MYB46(3)                      --------->ICU4      ----------->HVH21  --------->ARR11(3)      ----------->RAV1(1)                  --------->AtLEC2 ------>MYB83<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ARR11(3)  --------->ZAT6    <---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------ARR11(3)-------->P --------->ATHB12------>ZmHOX2a(1)------>MYB46(1) ------>MYB83<------ZmHOX2a(2) --->DAG2  <---------ARR11(3)       --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->DOF2------->GAMYB   >>>>>>>>>>>>>>>>>LFY ---------->DOF2--------->MYB46(3)    ---------->DOF2   gttcttgacaacagaccttaccactacgaccattggatgatcatcctgcaaagatgggaaccaacaatctctgacaccttcccctcaaagatcccttttt  17457700                                                                                                    -                                                                                                   --                                                                                                 <---                                                                                           ------>ZmHOX2a(2)                                                 --------->ANAC58                         <---------GLK1(1)                                                 --------->ANAC58                         <------ZmHOX2a(2)                                        <---------At4g35610                              --------->ARR14(3) ------>AGL1                            <---------GLK1(1)                                <---------ARR14(3) ---->AGL15                             --------->GLK1(1)                                --------->ARR11(3) -----AGL15                            --------->ARR14(2)       --------->CCA1(2)        --------->ARR14(2) ------AGL3            --------->ZAT6--------->LBD16           <---------ARR11(3)        <---------ARR14(2) ----->AGL2           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       --------->AHL20(1)        <---------ARR11(3) ------AGL2       --------->AtMYB61 ------->GAMYB--------->ANAC46        --------->GLK1(2)--------->GLK1(1) ------AG     <---------ETT(2)     <---------LBD16           ----------->ARR10          <---------GLK1(1) -DAG2      <---------ARR11(3)    --------->MYB52(1)       ---------->DOF2              --------->GLK1(1) --DOF2     --------->ARR11(3)    -------->P   ---------->DOF2 --------->ARR11(3) <---------AtLEC2<xx   ggatagatgtccaaggtctaccaaaacactactggcaaccggagatgctcaaagcaattggaaaagatattggagaatttttgagcatggagatctccaa  17457800  Previous    Next  AGI:  At5g43415.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 6.5e-36 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 17457316    to: 17463117    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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