Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                          <---------WOX13(1)                           <---------YAB1                                         <---------ANAC58                          <----------DOF2             <---------At4g35610         <---------ANAC58       <----------DOF2 <-----------GT1 -----             --------->At4g35610<---------ARR11(3)--------->ZAT14              <---------CCA1(2)<----  <---------ZAT6           ------>ZmHOX2a(1)      <---------ZAT14           <----------DOF2 <--------   tctagagttggatttagctccaaactttcctcttgatattttggattgccactgtagtgaagaattctttacatctatcttttatctttatgtttacgta  17449500     <---------AHL20(2) <----------DOF2 ---->SPL7 ---SPL7 -->TOE2(2) --ANAC55(2) --ANAC58 --ANAC58                                                                                    <------- ->ANAC55(2)                                       <---------YAB1                            -------- -------AtSPL8                <---------STY1(2) <------ZmHOX2a(2)       --------->ATHB12   --------->YAB1 ------>AtSPL8                --------->STY1(2) ============================HOX2a_HOX2a   --------->ICU4 ------>AtSPL3       --------->ICU4      --------->ATHB12              <---------YAB1<---------At4g35610 -->TEIL             <---------YAB1     <---------YAB1   <---------TOE2(3)       <-------GAMYB ---TEIL           <---------ICU4       <---------AHL20(2)           <------ZmHOX2a(1)    <---------YAB1 -------AtSPL3    <---------YAB1     <----------DOF2     <---------TOE1(3)      <---------MYB46(3)   cgtctttttatttgttcttcatcatttttagtagctagtctttttattggatcatggttaatgttagattaggatgatttgatggttagatgatgatgat  17449600                                     --------->ARR11(3)                                     --------->GLK1(2)                                --------->TOE2(3)                                <---------MYB59                                                  <---                                --------->TOE1(3)                                       -------------                          <---------ICU4                                  <---------YAB1<------------                          --------->ATHB12       --------->ANAC58    ----------->GT1    ------------- <---------TOE2(3)       --------->ICU4          --------->ANAC46    <---------ZAT6     <------------ --YAB1   <---------TOE2(3)    <---------ANAC55(2)                --------->DAG2   ------->TEIL------ ->ICU4<---------YAB1    <---------YAB1          --------->ANAC58---------->DOF2<---------YAB1<------   ttttatgttattaatgctagttttgacatgattacctaaaatctagaatttaagcaattcatggtagaaaagtgttatatttatgaatttgaagtacttt  17449700                                            <---------ZAT18                              <---------TOE2(3)        <---------TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------DOF5.7(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->AtSPL3               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <-----------GT1  ---------- ---AtSPL3            --------->LBD16 --------->YAB1         ---------->DOF2--------->MYB46(3) -->AtSPL8          <---------LBD16  <---------YAB1     ----------->GT1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---AtSPL8   ----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->WRKY38(1) --->DOF5.7(2)  <-----------GT1 <------ZmHOX2a(1)      ----------->GT1 xxxxxxxxxxxxxxxx>smallRNA(i) ----DOF2 <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ATHB12  <-----------GT1   aacgacaattgaggattgtaactccgcagttttaggaatatgatagtgcatacagagaggtttaaaagaattgatttgaccacctattttcaccaaagta  17449800                                                                                          --------->ATHB12                                                                                      --------->DAG2                                                                                   --------->LBD16                                                                                  --------->HSFB2a(2)                                                                                  <---------HSFB2a(2)                                                                                 <---------LBD16                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                    <------ZmHOX2a(1)---------->DOF2                                                                 <---------LBD16--------->MYB52(1)                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                            --------->ATHB51    ------>MYB46(1)                                                            <---------ICU4----------->HVH21                                 <---------ALFIN1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             --------->GLK1(1)             --------->ICU4*TSS   ------>MYB83<--------     <----------DOF2  <---------YAB1                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) >DOF2            <-----------HVH21   <---------MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------   aacttatcttttcgctcaaatgtcatgagagaactccacagttaagcgtttttaagttggaataatttcaggatgagtgaccttccggaaagtgattgtc  17449900                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                -----                                                                                                -----                                                 <---------TOE1(2)                              -----                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 ------                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 ------                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------                                       ----------->GT1                                       --------                                      --------->ALFIN1 ----------->GT1                       --------                                 =========================HOX2a_HOX2a                       ---------                                 <------ZmHOX2a(2)    ------>ZmHOX2a(2)                  --------->WRKY38(1)                 ---------->DOF2<---------ARR11(3)  --------->ARR14(2)                   <---------ZAT14              ==========================HOX2a_HOX2a <---------ARR14(2)                   --------->ZAT18 -WOX13(1)    <------ZmHOX2a(1) --------->ARR11(3) <------ZmHOX2a(1) <-----------GT1     --------->WRKY12 -----HVH21  <----------ID1 ---------->DOF2 <---------ANAC46       <----------DOF2       --------->ZAT14   agaactatacgagtgaggacaaagcatggaaaaagatcaagtggtgatttgtaggatcggtaaacaagtctttacagcctcacagacgtagtggaccgac  17450000        --------->YAB1      --------->ANAC58    ------>MYB83      --------->ANAC58    ------>MYB46(1)   --------->WRKY18(1) <-----------------AGL1 -------->SPL7         ----------------->AGL1 ------->ALFIN1     ----------->HVH21 --------MYB52(1) <---------O2                               <------NtERF2 ---------HVH21   --------->TGA1a                          <---------DEAR3(1) ---->DEAR3(2)    <---------TGA1a                          <---------MYB46(3) ---->MYB46(3)    ========================================MYC_MYB ---->SPL7        --------->O2                            --------->ALFIN1 >MYB46(1)      <---------ALFIN1                        <---------DEAR3(2) >MYB83--------->ICU4  ----------------->AG        <------MYB46(1)                              xxxxx --->HVH21     <---------ZAT18                     <------MYB83                         ------->TEIL< ->MYB46(3)    --------->RAP2.3(3)        --------->ZAT18<-----------HVH21         <---------At4g35610 ->DEAR3(1)    --------->ZAT18      --------->ALFIN1    <---------SPL7 <XXXXXXXXXXXXXXXXXXXXMIR845A-- >DEAR3(2)   --------->PCF2     <------ZmHOX2a(1)<--------P--------->ETT(1)        --------->At4g35610   cgtcgggcaaggatgagcccacatgaccaaatgaggacatggggctcactggtagggacggtcggggcattacaagtggtattagagctgaacccaaacg  17450100                                --------->MYB52(1)                                 --------->YAB1                               --------->ALFIN1                          --------->LBD16                               ----------->HVH21                        <---------LBD16                           <------NtERF2                                <---------ANAC46           <-          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <---------LBD16          <xxxx --------->ALFIN1      <-----------HVH21        ----------->RAV1(1) <---------MYB52(1)        ------- xxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ANAC58        <-----------HVH21        <-------- ---------ZAT14       --------->DEAR3(1)   <---------ANAC58      ------>ZmHOX2a(2) ----------->GT1 -- ------->ALFIN1    <---------ALFIN1        <---------ANAC46     <------ZmHOX2a(2)------->TEIL--------   agtgtggagtcaagaagactcacaccgtcgggagtgacggtcttggtgtgcaacaagaacattgcgatctgttagcggggatgaatcgtaaaaccccggt  17450200                 --------->AtLEC2               <---------ANAC58               <---------AtLEC2               <---------ANAC58              <-------TEIL           <---------MYB46(3)          <---------DEAR3(1) --------HSFB2a(2)                                              <---------ZAT18 xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               --------->ZAT18     <---------TOE2(3) -->LBD16 --------->ALFIN1                           <-----------HVH21   <---------AHL20(2) -LBD16<-----------RAV1(1)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <-----------GT1 ------->HSFB2a(2)       ----------->GT1            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ->LBD16  <---------AtMYB61           --------->ATHB12     ---------->DOF2   <---------YAB1   ttcagaaatatggtggtgcatgcagagaggtttatagaattgatttagtcacctctgtcaccaaagtgtgcttatttttttgattaaacgttttgagaaa  17450300                                                      --------->DAG2                                                   --------->LBD16                                                  --------->HSFB2a(2)                                                  <---------HSFB2a(2)                                                  <---------ANAC55(2)                                             <----------TaMYB80                                            <---------ARR11(3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <---------ANAC58         ----------->GT1               <---------ANAC58        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            ------->MYC2               <---------MYB46(3)            <-------MYC3              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ANAC55(2)            ------->MYC3            <------ZmHOX2a(1)---------->DOF2            <------ZmHOX2a(2)            <-------MYC2    --------->AHL20(2)    <---------ANAC46             --------->ARR11(3)   <          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------LBD16           ---------->DOF2         <-          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->GLK1(2)     --------->TOE1(3)    <---------ARR14(2)       <---------AHL20(2)   --------->YAB1 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ARR11(3)  --       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ARR11(3)      ----------->RAV1(2)   --------->ARR14(2)       --------->AHL20(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   actccacaattaaacgtgcttgggatgaaataatatcaggatgggtgatattccggaaagtgagaacaaaacctgaagaaagatcatgtgagtatttgta  17450400  Previous    Next  AGI:  At5g43405.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1) Range:  from: 17449873    to: 17450237    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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