Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <-----------GT1                 <---------AHL20(1)        --------->ATHB12     <---------YAB1                   --------->AHL20(2)       <---------AHL20(2)  -------->ATHB1                     <---------AHL20(2)     <---------AHL20(2)       <---------YAB1      --------->ATHB51                   --------->AHL20(1)     <---------YAB1     <---------ICU4       --------->AHL20(1)               --------->AHL20(1)       <---------AHL20(1) <---------AHL20(2)       --------->ICU4                   --------->AHL20(2)       --------->AHL20(1) --------->AHL20(2)       --------->AHL20(2)               <---------AHL20(1)       <---------AHL20(2) ------DAG2               <---------YAB1                 --------->AHL20(1)         --------->AHL20(2) -------DOF2              <---------AHL20(2)             <---------AHL20(1)   ----------->GT1 -----ANAC58      --------->YAB1                         <---------AHL20(2)  --------->DAG2 -----ANAC58----------->GT1<---------ICU4             --------->AHL20(2)    ---------->DOF2   tttttaatttttattggtaataagaaaaattattactaactcgataaaccctgatataaaatattttattatgtagaataaagtaatataatagaatcga  17407300                       <----------DOF2                 <---------ARR11(3)                 <-----------GT1                                                   --------->HSFB2a(2)                 --------->ARR11(3)                                          ------->TEIL         <--            <---------AHL20(2)                                             <-------TEIL           <<<            --------->AHL20(1)                                            --------->ANAC58   <-------            <---------AHL20(1)                                     --------->YAB1  <---------HSFB2a(2)            --------->AHL20(2)                          <-----------HVH21 --------->AtLEC2   --------    <---------WOX13(1) --------------------->WRI1 --------->MYB52(1)      --------->ANAC58   <------- <---------YAB1<---------AHL20(2)                 --------->YAB1  <---------AHL20(2)  ---------->DOF2   atttcgattgatattatattatcttctttttttgtttagaccatttcttcaataacagtgtcaaacatataatgacatgcattttctacaaagacagcta  17407400                                                  --------->AHL20(2)                                              <---------AHL20(2)                                              --------->AHL20(2)                                            --------->TOE2(3)                                          <---------ARR11(3) <----------DOF2                          --------->ICU4                                            - -------ARR11(3)                          --------->AHL20(1)   ----------->GT1            <---------ICU4 <<<<ZML2               <---------ALFIN1  --------->ARR11(3)  --------->DAG2          <---------AHL20(2) --At4g35610         --------->ANAC46     <---------AHL20(1) ---------->DOF2          --------->AHL20(2) ->At4g35610--------->ARR11(3)       ----------->GT1    ----------->GT1      --------->KAN4(2)  <---- --ZAT2     <---------AHL20(1)  ---------->DOF2   <---------AHL20(2)--------->ICU4   --------->AHL20(2)   gaactttagttttatatattcagacaccacttacaaaagaagaaaatattaattaaacatgaaaaaagtaaacattgaacatccccatttaattagggct  17407500              --------->SPL7            <---------SPL7           <------MYB46(1)           <---------DEAR3(2)          --------------->AtSPL8          <---------------AtSPL3          --------------->AtSPL3   ------>MYB46(1)   ------>MYB83                     <---------AHL20(2)                   <------------CBF           - <---------MYB59                   --------->AHL20(2)            <-----------GT1      <-----------GT1 ---------------->AG             --------->TOE2(3)             <---------AHL20(2)  <---------ICU4   < ------DOF2<------MYB83         <---------ICU4   <---------AHL20(2)--------->ZAT6  --------->YAB1  --   ttaccaaattagtcggtacgataaactcgtctaaacattaaatgggcttaattagttgggcttattttaacactaaattggcccattataacttcccaaa  17407600                           --------->ALFIN1                         <---------ANAC58                         <---------O2                         <---------bZIP60(2)                 *TSS                                  --               --------->ATHB12                              --------->AtMYB61                     --          --------->HSFB2a(2)                          <----------DOF2               --------->ARR14(2)          <---------HSFB2a(2)      --------->WOX13(1)--------->ZAT2                  <---------ARR14(2)     <---------MYB46(3)  <---------ANAC58            <---------ZAT2    --------->AHL20(2)  <---------  <------------CBF       <---------ANAC46            <---------At4g35610        --------->ANAC46<---- -------->ARR11(3)     <---------DOF5.7(2)      --------->At4g35610   --------->AHL20(2) --------->At4g35610 ---------ARR11(3)   --------->DOF5.7(2)     <------ZmHOX2a(2)        <---------ATHB12   <---------At4g35610 ------->YAB1 <---------YAB1     ------------>CBF    --------->At4g35610  --------->AHL20(2)  -------   atgatattggttcgagatgattcgataacgtgggcatcaatccatggatcatctcagctttcaccatcaccaataaataaacacacaggtctgctttcat  17407700    --------->ANAC58    --------->ANAC46                                           <------ZmHOX2a(2)    --------->ANAC58                                     <-----------GT1 ------->TOE1(3)                               --------->LBD16--------->ARR14(2)              <------ ------->TOE2(3)                              --------->DEAR3(1)------>ZmHOX2a(2)             <------ -DOF2                 --------->YAB1        <---------LBD16  <---------ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(s) -----CCA1(2)     <---------YAB1           <-----------GT1<-----------GT1       <---------ANAC46 -->YAB1        --------->YAB1      <----------DOF2 --------->ICU4    --------->YAB1          <------   accttcacgctctctcactgatcattcacaatctctctctttttttcaccggcgataattttccgatctcgattataagatggcgaaggaaccagttcgt  17407800                                                                                    <----------DOF2                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                 --------->AGP1                                                                                 <---------ARR11(3)                                                                                 --------->ARR14(2)                                                                                 <---------ARR14(2)                                                                                 --------->ARR11(3)                                                                                 <---------AGP1                  ----------->GT1                                               <---------At4g35610                <-----------RAV1(2)                                         <-----------HVH21            --------->ZAT2                                               <---------ARR14(2)            <---------ZAT2                                               --------->ARR14(2)            --------->At4g35610                                       <---------ANAC58         --------->LBD16                                              --------->ANAC55(2)       <---------LBD16                   ------>ZmHOX2a(2)            <---------ANAC58  --------->ANAC55(2)      --------->MYB52(1)                <------ZmHOX2a(2)             <---------ANAC55(2)     <-----------GT1        <---------YAB1            <---------CCA1(2) <---------CCA1(2) ---ANAC58  <---------At4g35610        --------->ARR14(2)         --------->ATHB12<---------RVE1(1) ---ANAC46 --------->ARR14(2)          --------->ARR11(3)    <---------YAB1 <-----------TGA1 -------- ---ANAC58 <---------ARR14(2)          <---------ARR14(2)    <---------MYB52(1) <---------CCA1(2)  <-   gttcttgttaccggagctgcaggtaaaattcttatttctccgatcttgtttcttccatctctcgttattgattcgtatcgtcagatctttatgtaacacc  17407900                                                             ------>ZmHOX2a(2)                                                            --------->At4g35610                                                            --------->CCA1(2)                                                            <------ZmHOX2a(2)                                                           --------->ARR11(3)                                                           <---------ARR11(3)                                                           --------->ARR14(2)                     ---                                                           --------->AGP1                     <------                                                           <---------ARR14(2)            ----------->GT1                                                           <---------AGP1                <------MYB46(1)                                   --------->YAB1         <---------GLK1(1)              <------MYB83                           --------->ATHB12       ==================HOX2a_HOX2a     --------->ATHB12                          ===============================HOX2a_HOX2a               ==================    --------->YAB1        <------ZmHOX2a(2)       =================HOX2a_HOX2a<---------WOX13(1)  --- ->ZAT6                   <---------YAB1          ------>ZmHOX2a(1)----------->GT1 <------ZmHOX2a(2) --------DAG2        <---------DOF5.7(2) <-----------GT1 ----------->ARR10  --------->ATHB12  -------   aatttttcataatccaaaaatgtaaacgatcattgaatcatattttcgattcctatagtgagatctgaagagagaaattgattggatcatttggtgaatc  17408000                                                    --------->ATHB12                                                   --------->ICU4                                                   <---------YAB1                                                 --------->YAB1                         --------->ATHB12 --->ZmHOX2a(1)                              <---------AHL20(2)                       <---------WOX13(1) ---ARR14(2)                     ----------->GT1 <---------ICU4           <----------DOF2   --------- ====HOX2a_HOX2a               <------ZmHOX2a(2)<---------YAB1            <---------------AGL15 -------->GT1           --------->ICU4  <---------AHL20(2)               <-----------------AGL3 -->ARR14(2)         <---------YAB1<---------MYB52(1)        <---------YAB1          <-------GAMYB  <   ctgttacattttgagatgtaattgtcattttggatcagttatttgattttatcatgatttgttctgattttgtaagctttatttggcgattgatttgtaa  17408100                                                                     <---------YAB1                                                                     <---------ATHB12             <---------YAB1                                         <---------TOE1(2)             --------->ICU4                          <----------TaMYB80          <------ZmHOX2a(2)                          <---------GLK1(1)         --------->ARR11(3)                          --------->CCA1(2)                         <-----     --------->REM1(2)                               --------->GLK1(1)                      <------MYB46(1)  <---------ANAC58                                  --------->ARR14(2)                   <---------ANAC58  <---------ANAC58                                  ---------->TaMYB80  <---------WOX13(1)  <------MYB83  <---------ANAC46                        <------ZmHOX2a(1)        ------>ZmHOX2a(1)     <---------ANAC58 -->GT1  <---------ARR11(3)            <---------AtLEC2        ---------->ID1           --------->ATHB12 ---------ANAC46               <---------MYB52(1)   <---------ARR14(2)--------->ATHB12 <---------YAB1   ttttgtgtgtagatcatgtttaagtgtgtttctgttattgtgcaggacaaatcggatatgctcttgttcctatgattgcaagggggataatgcttggtgc  17408200  Previous    Next  AGI:  At5g43330.1    Description:  malate dehydrogenase, cytosolic, putative. Identical to Malate dehydrogenase, cytoplasmic 2 [Arabidopsis Thaliana] (GB:P57106;GB:Q9LSX3); similar to malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana] (TAIR:AT1G04410.1); similar to malate dehydrogenase-like protein [Solanum tuberosum] (GB:ABC01890.1); contains InterPro domain Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; (InterPro:IPR015955); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase; (InterPro:IPR008267); contains InterPro domain Malate dehydrogenase, NAD or NADP; (InterPro:IPR01 Range:  from: 17407661    to: 17409873    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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