Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ANAC55(2)                                               <---------ANAC55(2)                                        --------->YAB1                                        --------->AHL20(2)                                       <---                                     --------->YAB1                                              <---                                    <---------AHL20(2)                                          -----                                    <---------YAB1                               --------->GLK1(1)                                   <---------AHL20(1)                           --------->ARR11(3)     <----------DOF2               --------->AHL20(1)                           <---------ARR11(3)---  <---------ARR11(3)               --------->AHL20(2)                   --------->ANAC58        -----  --------->ARR11(3)            --------->AHL20(2)                      --------->ANAC58        <---- -----ICU4 ----------->GT1----------->GT1--------->AHL20(2)             --------->ANAC46       ------   atgacatctttataagtaaaaaacatttaagtaaaaatataataaaaatacttgattactaaaactaaaaatttaagccaaagatttctatcgataaata  17312800                         --------->ANAC55(2)                         ----------->GT1                         <---------ANAC55(2)                    <---------AHL20(2)  ---------->DOF2  --------->AHL20(1)          --------->ANAC58 <---------AHL20(2)<---------AHL20(1)          --------->ANAC46                                   <-- --------->AHL20(2)<---------AHL20(2)          --------->O2                          <---------YAB1 ------YAB1--------->ARR11(3)                  --------->ANAC58                     --------->AHL20(1) ------AHL20(2)    --------->AHL20(2)          <---------O2                         --------->ARR11(3) ---->AHL20(1)  --------->AHL20(2)      --------->HSFB2a(1)                 <------------CBF     <--- ------>YAB1    <---------AHL20(2)      --------->HSFC1(2)                <---------YAB1        ----- ---->AHL20(2) --------->AHL20(2)       <---------HSFB2a(1)          <----------DOF2<---------AHL20(1) -----AHL20(1) <---------AHL20(2)       <---------HSFC1(2) <-------TEIL--------->WRKY45   <---------- --->YAB1  <---------ARR11(3) <---------YAB1  <---------LBD16--------->TOE2(3)      <---------ARR11(3)   taataaaagaatagatattaatttaataggtgataaatgcgaagtttccacgcgactcaaatacatcaaaactttgactattgaaatatttttgactatt  17312900                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   <-                          <---------AHL20(2)                                                     <---              <---------ARR11(3)                                                                 ----    <---------AtLEC2     --------->AHL20(2)         <----------DOF2       <---------AHL20(2)    <---- ----------CBF<---------GLK1(2)                  <-----------GT1    ------------>CBF            ----- ------AHL20(2)    <-----------GT1       <------------------------ANAC81 --------->AHL20(2)--------->TOE2(3) ---->AHL20(2)--------->ARR11(3)        <----------DOF2  <----------DOF2 <---------AHL20(2)--------->TOE1(3) -GT1       ----------->ARR10   ------------>CBF---------->ID1      <---------ZAT18     <-----------GT1   tattgtgcatgggaaagattttgactatttaatgtgcaatctctttttttgtttcttttcttttttttggtgcaattaaatctcacttatttaccttaat  17313000       ------>ZmHOX2a(1)  --------->GLK1(1)                                            <---------AHL20(1)  <---------GLK1(1)     <----------DOF2                        <---------AHL20(2) ---------ICU4         <---------DAG2                         --------->AHL20(2) -------->ATHB12    <-----------GT1                      <---------ANAC58                         <-- ------->ICU4   --------->AHL20(2)                       <---------ANAC58                      <----- --------YAB1   <---------AHL20(2)                       <---------ANAC46                      ------ ------ICU4    <---------AHL20(2)                       ---------->ID1                        <------ ----->YAB1--------->AHL20(2)                        <----------DOF2                    ----------->GT1 -----ATHB12   --------->AHL20(2)   <------------------------ANAC81                    <---------TOE2(3) ---->ICU4 ----------->TBP       <----------DOF2<----------DOF2--------->AHL20(2)    ---------->DOF2   catgatttcctctataaataaatcacctttccttcctttgtttttgttttcttttcttttcgtattaaattttcttgaacaaaaaaaaaaaggtttatat  17313100                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                -----                                    <---------GLK1(2)                                        --------                                   <---------At4g35610                                       --------                                   --------->At4g35610                                       --------        ---------->DOF2        <-----------GT1                                              ---------   <-----------GT1         <---------ARR11(3)                                             <---------SPL7 --------DOF2              <---------GLK1(2)                                           ------->GAMYB ----ARR11(3)              --------->ARR11(3)     <----------DOF2                   --------->MYB52(1) --->ARR11(3)            ----------->ARR10    <----------DOF2                     <---------MYB52(2)- ---CCA1(2)          --------->ATHB12    <<<<<<<<<TBF1                          --------->ZAT6  =====   cttttttacataaagagatttagtgattagatttttcagcttcttcttctttctttaaccatggataacaagttttatgtgaacactaacggcgaacgca  17313200              <---------ABI4(1)              --------->ATERF1(1)              <---------LBD16              --------->At4g35610              <---------At4g35610              <------NtERF2             <---------ATERF1(1)             ------>NtERF2             <---------DEAR4(2)             <---------RRTF1(1)             <---------ERF1             <---------RAP2.3(1)             <---------RAP2.6(1)             <---------ORA47(2)            <---------RAP2.3(2)                                    <---------At4g35610            <---------RAP2.6(2)                                    --------->At4g35610            --------->DEAR3(1)                                   <------NtERF2            <---------DEAR3(1)                                   <-----------RAV1(2)            <---------ATERF1(2)                                 --------->LBD16            <---------RRTF1(2)           --------->TGA2(2)      <---------At4g35610            <---------DREB2C(2)         <-----------TGA1        <------NtERF2            <---------RAP2.3(3)         <-----------HVH21       ------>NtERF2            <---------RRTF1(3)          ------>NtERF2          ----------->RAV1(1)           <---------ABI4(1)           --------->bZIP60(1)     --------->RRTF1(2)        <---------LBD16                --------->bZIP60(2)     --------->RAP2.3(2)       <---------ALFIN1 --------->ARR14(2)                     --------->DEAR3(1)      <---------WRKY38(1)              <---------bZIP60(1)    --------->RAP2.3(1)      <---------WRKY12  --------->GLK1(2)<------NtERF2        --------->RRTF1(1) ------->ARR11(3)--------->ATERF1(1)   <---------ANAC46     --------->ANAC46 --------ARR11(3)<------NtERF2        --------->RAP2.3(1)   ------->GAMYB ------>REM1(1)<---------DEAR3(1)     <------NtERF2         --------->DEAR3(1) ------>RAV1(1)--------->ALFIN1      <---------ATERF1(1)   <---------MYB55(2)                 ------- ->ANAC46 <---------ATERF1(1)       <---------DEAR3(1)     --------->MYB46(3)                ------->GAMYB ->ANAC58<---------DEAR3(1)        <---------At4g35610     <------------AtMYB77             <-------- ->ANAC58--------->ANAC46          --------->At4g35610     --------->DEAR3(2)              --------->MYB52(1) >SPL7<---------WRKY45  <---------ARR14(2)            --------->YAB1                       -------->P ---------->RAV1(2) <------ZmHOX2a(1)<---------RAP2.3(1)--------->MYB46(3)               --------->MYB46(3) ===========RAV<---------ANAC46   ------->GAMYB     <-----------HVH21 <-------TEIL   <-------TEIL   acatctggtccacggcggcggaggagaatatgacaacagcggcgtcatcgtctcagtcacaaccgccgcagatgcagtcgtctaagtttcatcaaccgga  17313300                                                                      <---------ZAT18                                        --------->ATHB12           <---------ANAC58                                    <----------DOF2                <---------ANAC58                -------->HAHB4     <---------ANAC58                <---------ANAC46                --                --------->YAB1     <---------ANAC58            <----------DOF2          <-------TEIL-      <-------TEIL       --------->HSFB2a(2)                 ------>ZmHOX2a(1)        --------->ARR14(2) <---------ALFIN1  <---------MYB46(3)  <---------YAB1    <---------ARR14(2)           <---------ARR14(2) -->LBD16  --------->AHL20(2) --------->ALFIN1           --------->ARR14(2)   <----------DOF2      <- -LBD16    <---------AHL20(2) <---------AtMYB61         <---------GLK1(2) <----------DOF2       <----   gaaccacatccatataaatgatggtttctcgagtggtgcttttgatttgcaaaccctagaatcctcttttcgtggactttcttttgcagattcaaatgtt  17313400                              <---------ICU4                     --------->ICU4                        --------->LBD16                        --------->MYB111(1)               <---------ARR14(2)                              <---------MYB46(3)               --------->ARR14(2)                             <--------P       --------->At5g28300   <---------ATHB12               <---------MYB46(3)           ------>ZmHOX2a(1)      ----------->GT1   ------>NtERF2                      --------->ALFIN1       <---------ICU4   --------->MYB52(1)  --------->DEAR3(1)               <---------AtMYB61  --------------->AtSPL8 ------->At4g35610     <---------ALFIN1              --------->ALFIN1      <---------------AtSPL8 -------->YAB1 <---------GLK1(2)                 <---------At5g28300       <---------MYB46(3) --------At4g35610     --------->ANAC46         --------->MYB52(1)        <---------ANAC46      <---- ---TEIL       <---------MYB52(1)      <-----------RAV1(2) <---------AtMYB61     --------->ICU4------   catcagaacggtaatccgatactccccgcccatcaatacaatcaggtgtttaacggtggaggtggtagttatggtgatgggtacttatttcctccaagtg  17313500                                                                                        <---------YAB1                                                                                       --------->TOE2(3)                                                                                    --------->WOX13(1)                                 ----------->GT1                                  <---------ATHB12                                <---------TOE2(3)                            --------->TOE2(3)                  <---------AHL20(2)               ------->GAMYB --------->YAB1 --------->WOX13(1)     <-----------GT1---------->DOF2             ----------->RAV1(1)          --------->YAB1 -----MYB46(3)    --------->AHL20(2)  <-----------GT1  <---------GLK1(2)    ----------->GT1       --- --->ALFIN1  <---------YAB1--------->AtLEC2     --------->MYB52(1)          <---------YAB1       <---   gttcttatcaccactatgaattaaaagacttgcaaaggtttaaccagaatcaacagagattgtcatatcagaacgattatgttaatcaatcttataggta  17313600                                                                                               <-----                                                     <---------ANAC58                         -------                                                     <---------ANAC58                         <------          <---------MYB46(3)                         <---------ANAC46                      --------->YAB1         <---------AtMYB61             <---------ANAC58         --------->ANAC46      --------->ZAT18         --------->ALFIN1              <---------ANAC46         --------->ANAC58      <---------ZAT18      <---------AtMYB61                <---------ANAC58         --------->ANAC58      --------->ZAT14  <---------YAB1              --------->ZAT6     --------->GLK1(1)                    <---------ZAT14 ------>YAB1             <---------ANAC58        <---------GLK1(1)             <---------At4g35610 ------YAB1              <---------ANAC58  <---------AtLEC2 <----------DOF2    --------->At4g35610   tgatactattggtggtggtaatgggatgcttaacaatagtttcttgaatggagttccttgtgcttcaagaaacaatgtttcagattactacactaatatt  17313700  Previous    Next  AGI:  At5g43090.1    Description:  APUM13 (ARABIDOPSIS PUMILIO 13); RNA binding. similar to APUM14 (ARABIDOPSIS PUMILIO 14), RNA binding [Arabidopsis thaliana] (TAIR:AT5G43110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61441.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Pumilio RNA-binding region; (InterPro:IPR001313); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 17313161    to: 17315399    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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