Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           <---------ARR11(3)                                                           --------->ARR11(3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <---------HSFB2a(2)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <---------TOE2(3)--------->ARR14(2)                                          <---------TOE1(3)<---------ARR14(2)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         <-----------RAV1(2)   <---------AHL20(2)                                   ---------->DOF2   --------->HSFB2a(2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               ------->GAMYB<---------MYB52(1) --------->AHL20(2)                              ----------->GT1<--------P<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xxxxxxxxxxxxxxxx>smallRNA(i) <---------GLK1(2)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             ------                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         --------->KAN4(2) ------>WOX13(1)    <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------KAN4(2) ------GT1        <---------AHL20(2)--------->DAG2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    -------   caatccaaattagtttgtatatttttttgacaacgaaaaaagttcaggtagttttctggcagattttaaatagttcgggtttttttgggaatatttccta  17310100                                                                                    --------->ARR11(3)                                                                                    <---------ARR11(3)                                                                                   <------MYB46(1)                                                                                   <------MYB83      <---------YAB1                          --------->YAB1               <-----------------AGL1 <---------ICU4                       --------->ANAC58               ------>ZmHOX2a(1) >ZmHOX2a(1)    --------->ANAC58      --------->ANAC58         --------->At4g35610--------->MYB59  <- -->TOE2(3)     --------->ANAC58<---------ATHB12          --------->YAB1--------->DOF5.7(2)------>ZmHOX2a(1)   aaaacattactattgggcaagacatattgggccaataaacaagcccattgacaatttgcatcatcatcttcctcgtttacgaattaggtcttcctgtgat  17310200                 --------->At5g28300                        ----------->RAV1(1)               --------->LBD16                             --------->DEAR3(1)       <---------TOE2(3)                                  <------NtERF2--------->At4g35610      <-----------GT1                                    ------>NtERF2 <---------At4g35610     <-----------GT1                                    --------->ANAC46    --------->AHL20(2)                        --------->YAB1------>NtERF2 ------>MYB83<---------LBD16                 <---------ATHB12  ------------>CBF                     - ------>MYB46(1)--------->LBD16<---------At4g35610      --------->ANAC58                  --------->YAB1 --------MYB59<---------LBD16  --------->At4g35610      --------->ANAC58  <-------TEIL   XXXXXXXXXXXX   accaaatttaacatttcccggtgaaaatttcgaagctcaaaactctaatcaaaacatcgcgccaacacaattcagcttcatttttcaaaaaatcaaaacc  17310300                 --------->DEAR3(1)                 --------->ANAC46                 --------->RAP2.6(2)              <---------ARR14(2)              --------->ARR14(2)         ----------->GT1     <---------ARR14(2) --------->DOF2 --------->MYB46(3)                                               <-----------GT1 XXXXXXXX>MIR1888------->GAMYB  <----------DOF2                           <----------DOF2   tgtaaagaattcggaaaaaccgccaaaatccaaactttattccaaaaaatcacaaaaatgtctcttcgcttcttctctttttctcacccttctcacttcc  17310400                     ------------>CBF                   --------->DEAR3(1)                    ------>ZmHOX2a(2)            <---------ATHB12           ------>MYB46(1)                       --------->MYB46(3)           ------>MYB83                         -------->P<------NtERF2         <---------MYB46(2)                    --------->WOX13(1)         <---------MYB59                     <---------ATHB12         <---------MYB111(1)                 --------->MYB46(3)           <---------ANAC58          -        --------->ANAC46                    --------->ANAC46              <---------ANAC46     ------      <---------ALFIN1                     --------->WOX13(1)  ---------->DOF2               --------     --------->MYB46(3)                  ------------>CBF------>NtERF2    <---------ANAC58--------->At4g35610   attctcatccacctaatctcgatctcaatccctctctcttgaatccaatcaaccatggccgacgaaaaagagaactgcgtgagaatgacaagagcagcaa  17310500                       <------NtERF2                      --------->RAP2.6(2)                             --------->At4g35610           <        <---------HSFC1(2)                                            <---------At4g35610        ----        --------->HSFC1(2)          --------->MYB52(1)               <---------ARR11(3)         <----     ---------->DOF2<---------At4g35610                              --------->ARR11(3)         ----- --------->DOF2     --------->At4g35610                        <---------LBD16               -------- ----->RAV1(1) --------->AtLEC2   <---------MYB52(2)       <---------SPL7                    -------- ->At4g35610 <---------AtLEC2   ---------->DOF2          --------------->AtSPL3       ----------->RAV1(1)   caaaaagaaaagcttccatggaagcggcaatagacaaagaacgaatcaacaagaagagagtcgtactcggagagcttccaaacttgtccaacatcaagaa  17310600                                                                                           ------>ZmHOX2a(2)                                                                                           ==========                                                                                       <---------YAB1                                                                                   ------>ZmHOX2a(2)                                                                                   ==================                                                                                  ===================      --------->ANAC58                                                            <------ZmHOX2a(2)      --------->ANAC58                                                            --------->CCA1(2)     --------->DAG2                                                              --------->ARR11(3)    ---------->DOF2                                                              <---------ARR11(3) ---------HSFB2a(2)                                                              <---------ARR14(2) ----->ARR11(3)                                                                  --------->ARR14(3) -----GLK1(1)                                            --------->TOE1(3)       <---------ARR14(3) ---->GLK1(1)                <---------GLK1(1)           --------->TOE2(3)       --------->ARR14(2) ->ANAC58                >>>>>>>>>TBF1             --------->YAB1                <---------AGP1 ->ANAC58        --------->MYB52(1)         <---------ETT(1)                     --------->AGP1     -   atctcgaaaagccactacaaaacagaagaagaaatcagtttcgattccgacaatcgaaaccttaaattcagacattgacacaagatctgatgatccacaa  17310700                               <---------ARR11(3)                               --------->ARR14(2)                               --------->ARR11(3)                 --------->TOE2(3)        ------>ZmHOX2a(1)      --------->GLK1(2)  --------->ALFIN1             <-----------ARR10  <---------AtMYB61 --------->WOX13(1)  --------->WOX13(1)                               --------->GLK1(2) ==============HOX2a_HOX2a     <---------ARR14(2)                                 <---------GLK1(1) ==============HOX2a_HOX2a    <---------CCA1(2)   ---------->DOF2             <---------HSFB2a(2) ==============HOX2a_HOX2a --------->HSFB2a(2)<---------ZAT6      <---------CCA1(2)  <-----------GT1 -------->ALFIN1--------->REM1(1)    --------->TOE2(3)<----------ID1          --------->HSFB2a(2) ---   atgtgtggtccttatgttacatcaatcttcgagtatcttcgtcaattagaggtaaagaaacaaaacccatctctagatttctagatttcacaatctgagt  17310800                                              --------->AHL20(2)                                         <--------P                  ----------->GT1                -                                    <----------DOF2                  <---------REM1(1)              <                                 <---------ARR11(3)             ---------->DOF2                 <----                    <---------TOE2(3)    <---------WOX13(1) <-------TEIL------->TEIL           <-----            --------->ZAT6       --------->ARR11(3)        --------->CCA1(2)             <------ZmHOX2a(1)          <-----------GT1--------->DAG2 <-------GAMYB     <---------ARR14(2)       <---------YAB1<---    --------->HSFB2a(2) ---------->DOF2<---------MYB46(3) --------->ARR14(2)    --------->ARR14(2)<-- ------>MYB52(2)   <-----------RAV1(2)<---------AtMYB61 ----------->ARR10       <---------ARR14(2)<--   tagtttctcgattaacacaattcaggtaaagtcaagacctttggttgattatatagagaagattcagaaagatgtaacttcgaatatgagaggagttttg  17310900      <--------P    <------MYB83    <------MYB46(1)    <---------MYB46(3)  <---------WOX13(1) -------->ATHB12                                                                    ---------->ARF1 ---------MYB46(3)                                                                  <---------CCA1(2) -----MYB46(3)                                                                --------->GLK1(2) ----AtMYB61                                                                 <---------GLK1(2) <----- ----GAMYB                                                      <---------ANAC58<---------ANAC58 ------P--------->MYB52(2)                         <-----------GT1        <---------WOX13(1)   ------ -------WOX13(1)  --------->At4g35610            <----------DOF2<---------ANAC58<---------ANAC58<----   gttgattggttagtagaagttgctgaagaatacaaacttctctcagacactctttacctcgctgtttcttacattgatagattcttgtctctcaagactg  17311000  Previous    Next  AGI:  At5g43080.1    Description:  CYCA3;1 (CYCLIN A3;1); cyclin-dependent protein kinase regulator. Identical to Putative cyclin-A3-1 (CYCA3-1) [Arabidopsis Thaliana] (GB:Q9FMH5); similar to CYCA3,2, cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT1G47210.2); similar to cyclin-dependent protein kinase regulator-like protein [Brassica rapa] (GB:ABB97043.1); contains InterPro domain G2/mitotic-specific cyclin A (InterPro:IPR015453); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Cyclin, A/B/D/E (InterPro:IPR014400); contains InterPro domain Cyclin, N-terminal (InterPro: Range:  from: 17310455    to: 17312017    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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