Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                              --------->GLK1(1)                                                              <---------GLK1(1)                                                             --------->ARR11(3)                                                             <---------ARR14(2)                                                             --------->ARR14(2)                     <---------ATHB12                        <---------ARR11(3)            <---------ALFIN1                                 <---------AGP1         <-----------GT1                               <----------DOF2      <---------GLK1(2)                         --------->AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------ARR14(2)                   ------>ZmHOX2a(1)  <---------CCA1(2)    --------->ARR14(2)                   =============================HOX2a_HOX2a  <---------DAG2    --------->ARR11(3)     ------>ZmHOX2a(1)    <---------AHL20(2)         ------->TEIL    <---------ARR11(3)--------->YAB1     ============================HOX2a_HOX2a<-----------GT1   <---------CCA1(2) --------->ICU4<---------ALFIN1<-----------GT1      ----------->GT1   gatgcatatattctccacttgcaataatcctgaacacacactccttctattttattcctttcggatctcttaaaatgtatattcaccttctctctaatag  17271100                                                                           <---------ICU4                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    --------->ZAT6                              --------->YAB1                  -----                 ------>ZmHOX2a(1)                             <---------YAB1   ----------->RAV1(2)                --------->TOE2(3)                         <---------ARR11(3)    <---------At4g35610             <-----------GT1<----------DOF2               --------->GLK1(2)--------->YAB1       <----            <---------CCA1(2)                             --------->ARR11(3)    --------->At4g35610   catacttctcaattgtatccttacacttctctttagaaacaaactcttgccctacataaaaatctattatagcaccatcatcatctgagtcatcactctc  17271200                                                                                           ==========                                                                                           ----------                                                                                           <---------At4g35610           ----------->GT1                                                                 --------->At4g35610     --------->YAB1                                                                     <------ZmHOX2a(2)     <---------ICU4         --------->ZAT14             <----------DOF2                <---------ARR11(3)    --------->ICU4          <---------ZAT18         ------>ZmHOX2a(1)                  --------->ARR11(3) --------->ICU4             --------->ZAT18------>ZmHOX2a(1)      --------->YAB1      --------->YAB1 ---->ETT(2)    --------->ICU4            <---------ALFIN1  <---------------AGL15     <------ZmHOX2a(1) -----ETT(2)--------->At5g28300        --------->ARR14(2)   --------------->AGL15   <---------TOE2(3)   gacataatcatcacggtaaaaatcaagttgttcactctcaggctcctcttcttcctccctttctccaataagaacatcatctagataaggatcatctgcc  17271300                                            <---------ICU4                                            --------->ATHB12                                            --------->YAB1                                            <--------HAHB4                                           <---------YAB1                                           <---------ATHB12                      <---------YAB1                                           --------->ICU4                   <---------ICU4                                          <-----------------AGL1     --------->ANAC58                   <----------DOF2    --------->ANAC58               --------->ANAC58                  <---------ANAC58    --------->ANAC55(2)            --------->ANAC46              <---------ANAC58        <---------ANAC55(2)         --------->ANAC46  --------->GLK1(2)        <---------AHL20(2)            --------->ANAC46 --------->REM1(1)  --------->ARR14(2) ------>MYB46(1)        --------->AHL20(2)            --------->ANAC58 --------->bZIP60(2)<---------ARR14(2) ------>MYB83  ----------->RAV1(1)                 --------->ANAC55(1)       --------->YAB1------>ZmHOX2a(1) =============RAV <---------ANAC58 <---------REM1(2) ----------->RAV1(1) --------->GLK1(1) <---------MYB59 ->RAV1(2)    <---------ANAC58   --------->ZAT14--------->RAP2.6(3)<---------ALFIN1<---------GLK1(2)<   ctaacaacatataaattcttgctttccaactcatgtgtacacgtaatcatttcggcaacatcactatcaccacacaaatccttacgattctgacctactt  17271400                                                 --------->YAB1                                               --------->ANAC58                                             <---------ALFIN1            *TSS                                         --------->MYB46(3)        <---------ICU4         ----------->GT1       <-----------GT1 --------->ANAC58   <---------YAB1                  --- -----------RAV1(2)      --------->YAB1<-----------GT1    --------->ARR14(2)      --------->ARR11(3)   ctccagatgggaagtaagaaaacttactcatattttctgtataaccagcactcaaaaccatatttgtcaacattgctaaactagggtcttcaaaatcaag  17271500                                                      ------>NtERF2                                                     ----------->HVH21                                                  --------->TOE1(2)                                               <---------ARR11(3)                                               --------->ARR14(2)                                               --------->ARR11(3)                  ------>NtERF2         ------>NtERF2<---------ETT(1)                 --------->DEAR3(1)  --------->At4g35610   ------------>CBF                 --------->DREB2C(2) <---------At4g35610  --------->ANAC58                 --------->ANAC46    --------->ZAT2------>ZmHOX2a(1)                            -----                --------->MYB46(3)  <-----------RAV1(1)   --------->AtLEC2                     <-----           ---------->ARF1     --------->MYB46(3) --------->TOE2(2)                         ---------     --------->ARR11(3)       ------->TEIL------------>CBF--------->ANAC58      ----------->HVH21     <---------ARR11(3)      <-----------GT1   <---------ARR14(2) ---------->DOF2 <<<<<<<GRF7-------- -------->GT1  <---------At5g28300----------->RAV1(2)--------->ANAC46           ------>ZmHOX2a(1)   ctgtaaacatcttgtctcaccgccatggtatgaaccatctgctgcccaatatcctccgacatgcaatcgaaagaaaaacgtcctgacaaatacaattatc  17271600                                                                       --------->ANAC46                                                                       --------->ANAC55(2)                                                                      <-------TEIL                                                                  --------->ARR11(3)                                                                  <---------ARR11(3)                           ------>ZmHOX2a(1)             --------->ANAC46                    --------->WOX13(1)          --------->ANAC55(2)  <-----------GT1             ----                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC58                  <---------AHL20(2) ---->YAB1  <---------ARR11(3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->AHL20(2) ----YAB1   --------->GLK1(2)        <---------YAB1      --------->ANAC58              --------->AHL20(2) >ICU4     --------->RVE1(1)<---------TOE1(2)   <---------ANAC55(2)--------->CCA1(2)   <---------AHL20(2) ->YAB1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(2)   aaaaactctctaaaaatctgatcaatctcctaagtttttaatattgtatcatgtaatgcaaggaataagatatacgtctcaaaaccaatttaaaaaattg  17271700                                             <---------PCF2                                             --------->ZAT18                                           <---------ZAT18          <---------AHL20(1)              --------->ALFIN1                     --------->ANAC58          --------->ARR11(3)     --------->CCA1(2)                <-----------ARR10<-----------HVH21          <---------ARR11(3)    <---------ARR11(3)   <---------ARR14(2)        --------->ANAC46          --------->AHL20(1)    --------->ARR11(3)   <---------ZAT14           --------->ANAC58 -----       --------->YAB1       ---------->DOF2--------->ZAT18<---------REM1(1)   ------->TEIL      ===== ------>DOF2     ----------->RAV1(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->YAB1<---------ANAC55(2)   aaagaacaagaatattttccaacaaaattcaaaagatataagaagtgggcacgagtatacatgtagcatctctaagcatgaacgccatcacataaactca  17271800               <---------ZAT14               --------->ZAT18               --------->ZAT14               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ZAT14          <---------ZAT14   --------->ALFIN1 <---------bZIP60(2) ==============================bZIP_DOF                                                           --- <---------ANAC58                                                                            -------- <---------TGA1a             <-----------GT1                                   --------->DAG2<------- --------->TGA1a            --------->AHL20(2)                                ---------->DOF2-------- <---------O2  <---------ZAT18 --------->ZAT6                        --------->ANAC58        <------- <---------ANAC58----------->RAV1(1)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <------- --------->O2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <------- ----->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)---------->DOF2     --------->ANAC58   <------------ ==========bZIP_DOF ---------->DOF2         ----------->GT1       ------>ZmHOX2a(2)     <------------   aagacgtggctctatagtgcaccaaagaaattaactctccaaggtgagtttaaaagtcagagtatggatcgaagcaaaaaaaaagtttttagagtacgtg  17271900                                                               --------->RAP2.3(2)                                                               --------->RAP2.6(2)                                                             <---------At4g35610 ------->DOF2                                                --------->At4g35610 ->ANAC55(2)                                           <---------ZAT2 --ANAC55(2)                            --------->TOE1(3)  <-----------RAV1(2) --->GT1                                --------->TOE2(3)  <---------ALFIN1 --ANAC58                 <---------ANAC58             --------->At4g35610 --ANAC58                 <---------ANAC46            --------->ANAC58 --ANAC46                 <---------ANAC58    <---------ARR11(3)                                   <- ---AtSPL8              --------->ARR11(3)    --------->ARR11(3)--------->LBD16                  <--- ---AtSPL3        --------->YAB1    <---------MYB52(1)--------->ANAC58   <---------ETT(2)   xxxxxxxxx   aaaaggaaaactaaaaccaataagaatgtcttgtaacagttaccttaacatcttgcaagctccagccgcattcagtctacaaaatttcgcgattcaatgt  17272000  Previous    Next  AGI:  At5g43015.1    Description:  transposable element gene. Mutator-like transposase family, has a 2.3e-39 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 17268990    to: 17271473    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version