Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->ANAC58               <-----------GT1                                 ---------->DOF2       ------>MYB46(1)                             --------->DAG2--------->ANAC46       ------>MYB83                       <---------HSFB2a(2)<----------DOF2     --------->MYB46(3)                   --------->HSFB2a(2)<---------DAG2 -->YAB1<---------ATHB12<---------HSFB2a(2)       ---------->DOF2--------->ANAC58                ----   aacttcaccaatcgatttcactaattcgagagaccactcttcttctctaagaaaaagcgaacactttaagcaattgagagaaaaccctagaatcgattca  17268000                                                                <---------------------WRI1                                                               --------->ANAC58                     --------->ARR14(2)                        --------->ANAC58                    --------->GLK1(1)                        ---------->DOF2                 --------->ANAC58                         --------->AtLEC2                 --------->ANAC55(2)                     --------->WOX13(1)                 --------->ANAC46                    --------->ANAC46                 --------->ANAC58   --------->DAG2   --------->ANAC58       --------->At4g35610   ----------->GT1         --------->ANAC58             --------->ICU4 ----->ANAC46  <-----------GT1     ---------->DOF2<-------TEIL --------->ANAC46 ---------->DOF2  ----   cacaaaaacagctaaatttacgaaatccacatagaaaaaaaggagccctagattcaagtcattcaaagccattcgaactaagtaaagatgaggcactggc  17268100                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                              ------>ZmHOX2a(1)                    <-                                                             <---------ANAC58            <---------LBD16                                                             <---------ANAC58        <---------MYB52(1)                                                   --------->ARR14(2)              <---------HSFB2a(2)                                                   <---------ARR14(2)              --------->HSFB2a(2)                                               --------->ANAC58                   <---------LBD16  <-                                               --------->ANAC55(2)               <-----------GT1   <-                                  ------->TEIL <---------ANAC55(2)           <----------DOF2  -------                            <---------ARR14(2) --------->ANAC46          <------ZmHOX2a(1)   --------              ------->TEIL <------ZmHOX2a(1)   --------->ANAC58  <-----------RAV1(1)--------->LBD16<- ------->RAV1(1)     ---------->DOF2          <---------LBD16<---------ANAC46<---------DAG2  <-------   aacattgatgcaattgaatctttgaaagaggaatcgaacctgttcgaacacgggattcgagttccttatgttggaggagctttttccggtactcggaaac  17268200          <---------ANAC46       <---------DEAR3(1)       --------->ANAC46      --------->SPL1(2)      --------->SPL7     --------->SPL1(1)     <---------SPL1(1)    <---------SPL7    <---------ZAT14   <----------DOF2   ====================================bZIP_DOF <-------GAMYB --------->At4g35610 ======================================MYC_MYB <---------At4g35610 <------NtERF2 <------------------SPL14           <---------WRKY38(1) ---------MYB46(3)                  <---------WRKY12                                         -------- ----------------->SPL14      <-----------HVH21                                           =========== ---------RAP2.3(1)          <---------TGA1a                                              --------->LBD16 ---------ATERF1(1)          --------->TGA1a                                              ------>ZmHOX2a(1) ---------ERF1   ======================MYC_MYB                                     <---------GLK1(2)- ----->NtERF2  --------->MYB52(1)  --------->WRKY18(1)                        ------>ZmHOX2a(2)     - --------RAP2.6(2)    <-------TEIL<-----------HVH21                           ===================HOX2a_HOX2a --------RAP2.3(2)  --------->ARR14(2)                 ------->TEIL          <---------GLK1(1)      - --------RAP2.3(3)  <---------ARR14(2)                 --------->ARR14(2)    ====================HOX2a_HOX2a -->MYB52(1)  ----------->HVH21  <---------DEAR3(2)    <---------ARR14(2)    <------ZmHOX2a(2)      - ->ARR14(2) <------NtERF2    <---------O2             <---------CCA1(2)     --------->ARR11(3) ------ --------DEAR3(1)<------------MYB.PH3(1)        --------->GLK1(1)           <---------AGP1=========== --ARR14(2)------>NtERF2     --------->O2       <---------GLK1(1)           <---------ARR11(3) ------   ggcggctgtacggcgtctaacggattcatcgacgtcggtcatcgtttctgaattctgtatctgcttcttctacagatagatctcagattatcctgaaaag  17268300                         <---------ARR14(2)          ------>ZmHOX2a(2)         <------ZmHOX2a(2)        --------->ARR11(3)    --------->ANAC58     --------->ARR14(2)    --------->ANAC58     --------->GLK1(2) -->DOF2<---------ARR11(3) ===============HOX2a_HOX2a -------->AtLEC2 --------->ANAC46 -------->ANAC58<---------HSFB2a(2) -------->ANAC58<---------HSFC1(1)                                          <------------CBF      <-- -------->ANAC46--------->HSFB2a(2)                                     --------->LBD16          <--- --->ANAC58     --------->HSFC1(1)         <---------ANAC58            --------->HSFB2a(2)       <--- ================HOX2a_HOX2a               <---------ANAC58    <----------DOF2                <------ --->ANAC58<----------DOF2         ---------->DOF2            *TSS     <---------HSFB2a(2)   <-------   ccaagcaagcgatcttttctcgaaacaaatctgtctgaaaagttttcttgagcaatgggtttagtctttctctccagaaattggactaaaatacagattg  17268400                              <---------MYB52(1)                              <------NtERF2                                         <---------TOE2(3)                             ------>NtERF2                                    --------->AHL20(2)                            --------->DEAR3(1)                           <---------AHL20(1)                  <---------At4g35610                                    --------->AHL20(1)        <------ZmHOX2a(1)--------->ANAC58                         --------->AHL20(2)<---------TOE1(3)   --------->LBD16--------->At4g35610                         <---------DAG2<---------AHL20(2) --------DOF2   <---------ZAT18                               <----------DOF2 <---------AHL20(2) ------ANAC58   --------->ZAT14                            <-----------GT1<---------AHL20(2) ------ANAC58   <---------ZAT14                        <----------DOF2  <---------AHL20(2) ---WOX13(1)    --------->ZAT18       <-----------GT1  <---------DAG2 --------->AHL20(2)            < -----CBF--------->ZAT18 --------->ANAC58           <-----------GT1   <---------AHL20(2)       ------   ctttccgagaggacacagtgaactgaaacgccgtcgtttttaactactgtttttttacttttcactttttatatatatatttttttagggtttttagtaa  17268500              >>>>>>>>>>AGL22              >>>>>>>>>>AGL24              >>>>>>>>>>AGL20           <---------------AGL15                   <---------TOE2(3)           --------------->AGL15                 <---------AHL20(2)           --------->AHL20(2)                   --------->AHL20(2)          ----------------->AGL2            <---------ARR11(3)                                      <          <-----------------AGL3            --------->ARR11(3)                                      -          ----------------->AGL3            --------->AHL20(1)                                     xx       <---------ALFIN1                     <---------AHL20(1)                                   <---     --------->ANAC46                    --------->YAB1                                          <---    --------->ANAC46          <-----------GT1<---------AHL20(2)     --------->ZAT6        --------->TOE2(3) -----------GT1       ----------->GT1   <---------ATHB12        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --->YAB1 <-----------------AGL2      <XXXXXXXXXXXXXXXXXXXXMIR397B ------->TEIL    <---------ZAT6<---   taaaaccccccaactaaatatggattgtgaaaaaacccctcaatgatatatttaatgaaaaaacacatgaactctaaaattgttagtgaaaacctcattc  17268600         ----------->GT1           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         <---------ZAT6           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->ZAT14              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                           <---     <---------ZAT14         <---------AHL20(2)                   ------->TEIL                  -----     --------->ZAT18         --------->AHL20(2)           --------->ANAC46                      <----  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->ANAC58                 --------->AHL20(2) ---------ZAT14          --------->AHL20(2)               --------->ANAC58                 --------->AHL20(1) -------->ZAT14      ----------->GT1       <-----------GT1<----------ID1           --------->AHL20(2) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------At4g35610 ------ ------ANAC58    --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->At4g35610<------ ------ANAC46   --------->RVE1(1)--------->ANAC46  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     <---------AHL20(2) ------ANAC58   --------->CCA1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<---------AHL20(2)    <---------AHL20(1)   cgtctactgtactgttaaatatccagttaaattaaacgctgcattttacattgaagaaaaacgacatgtattttttttgctgcaataaaacattttatta  17268700                                                             --------->GLK1(2)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       <---------TOE2(3)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  -------->ATHB1                               --------->O2       --------->YAB1                             <---------ALFIN1     --------->ATHB12                   --------->AHL20(2)            <---------YAB1               <---------AHL20(1)                <---------ATHB12               --------->AHL20(1)              --------->WOX13(1)                                   -               <---------AHL20(2)            ===================HOX2a_HOX2a                         <    <----------DOF2<---------AHL20(2)        <------ZmHOX2a(2)                                     -- ------YAB1    --------->AHL20(2)           --------->ARR11(3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---->AHL20(2)--------->AHL20(2)            <---------ARR11(3)      --------->SPL7         xxxxxxxxxx -----AHL20(2)<---------AHL20(2)           ------->GAMYB <------ZmHOX2a(1)                xxxxxxxxxxx --->YAB1<----------DOF2   ------>NtERF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ARR11(3) ---YAB1 <---------DAG2--------->ANAC46<---------WRKY38(1)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxx   aaattcctttgctttattaaattaaacgctgccacttctgatcaacgatctatcattgaggagactctggtacagccattgcattggatattgttgatgt  17268800           <---------DAG2           <----------DOF2          <---------ANAC58          <---------ANAC58       <---------WOX13(1)      <---------ANAC58               <---------AHL20(2)                            <---------AHL20(2)      <---------ANAC58               <---------AHL20(1)                     <-------MYC3     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       --------->MYB46(3)           ------->MYC3     --------->ATHB12                --------->AHL20(2)                 <-------TEIL    <---------YAB1                  <---------AHL20(2)                 <------ZmHOX2a(2) -------->ARR11(3)     <-------GAMYB--------->AHL20(2)                --------->AGP1 ---------ARR11(3)    ----------->GT1--------->AHL20(1)               <---------ARR11(3) ------->YAB1  <---------YAB1   --------->AHL20(2)            <----------DOF2     --------->AHL20(2) xxxxxxxxxxxxx>smallRNA(i2)     <---------AHL20(2) <------ZmHOX2a(2)  --------->ARR11(3) xxxxxxxxxxxx>smallRNA(i2)      --------->AHL20(1)--------->ARR14(2) --------->GLK1(1) xxxxxxxxxxxxxxxxx>smallRNA(s2)--------->AHL20(2) <---------ARR14(2) <---------GLK1(1)       <-------   atgatattgattgctttatttttgctgttaaaaaaaaattaaattttcaaccgatccaaaaattcttttagagatccatgtgtattaaatctaatagaac  17268900  Previous    Next  AGI:  At5g43010.1    Description:  RPT4A (regulatory particle triple-A 4A); ATPase. similar to 26S proteasome regulatory complex subunit p42D, putative [Arabidopsis thaliana] (TAIR:AT1G45000.1); similar to 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum] (GB:BAC23035.1); similar to unknown [Populus trichocarpa] (GB:ABK94909.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75568.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937 Range:  from: 17265518    to: 17268362    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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