Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                  ---                                                                                               <-----                            <---------At4g35610                                               <------                            --------->At4g35610                                               <------                            --------->HSFC1(2)                                               --------                            --------->ZAT2                                                 --------->ZAT18                            <---------HSFC1(2)                                             <---------SPL7          --------->YAB1    --------->HSFB2a(1)    --------->ARR14(2)                     <---------ANAC58   ------>MYB46(1)          <---------HSFB2a(1)    <---------ARR14(2)                  --------->DAG2   ------>MYB83     <---------ANAC58              <------ZmHOX2a(1)                   ---------->DOF2  ==============================RAV             <---------TOE2(3)           <-------TEIL  <---------ANAC58  ----------->RAV1(1)     <------ZmHOX2a(1)--------->ICU4          <---------YAB1  <---------ANAC58 --------->AtMYB61  ----------->RAV1(2)   <---------TOE2(3) --------->TOE1(3)      <---------ANAC46 -------->MYB46(3)  <---------ANAC58  <------ZmHOX2a(1)    ----------->RAV1(2)     <---------ANAC58--   aaaccaacacaatgaaaaacttgcctgaggagcttccataggataatgttgaggaaactcaacctgaagattataagtttcattagcgtaaagcgtacca  17262800      <-----------HVH21     ------>ZmHOX2a(1)   ----------->RAV1(2)                                                        --------->YAB1 -----PIF5                                                          ----------->GT1 ---->PIF5                 --------->AHL20(2)                       --------->YAB1 ------RAV1(2)           <----------DOF2                           ----------->GT1          --------- ---TOE2(1)--------->TOE1(3)                           --------->YAB1      --------->YAB1   <-------- ---TOE1(1)--------->TOE2(3)                          <---------ATHB12    <---------AHL20(2)<-------- ->SPL7<---------MYB52(1)--------->TOE2(3)            <<<<<<<<<ARR2--------->ICU4  ---------->DOF2 ------->ALFIN1   <-----------GT1                   --------->WOX13(1)<---------YAB1      -----------   ggtgctcctgttacctcaattacccatctttaaatcacacaaaaacaaaaaaaacaatcaaaaatcgaaatgataaataatcaaaaaaaggaaagatttt  17262900                                                            <---------ANAC58                                                            <---------ANAC58                                                          <---------AHL20(2)                                                          <-----------GT1                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                   <-------GAMYB                                                  <---------DEAR3(2)     <---------ICU4                               <------MYB83  --------->YAB1                                  <------MYB46(1) ----------->GT1                                 --------->MYB55(2)                              ---- >ARR11(3)         <---------GLK1(2)             <---------DEAR3(1)                              ---- -GLK1(2)  <----------DOF2                       <---------MYB46(3)             <----------DOF2  ---- -ARR11(3)<---------YAB1--------->ZAT6           <---------DREB2C(2)   --------->YAB1            ---- >ARR10 <-----------GT1<---------YAB1          <-----------HVH21      <---------YAB1  <-----------GT1   gaaatgaaaattacttttgaagattatcagtaactctgtgcttaaacccagtcggtggatttacttgccactctgataactccttttgtaacctattaca  17263000       <---------ANAC58       <---------ANAC58   ------>ZmHOX2a(2)                                                                              ---  <------ZmHOX2a(2)                                                                               <-- --------->ARR11(3)                                                                               <-- <---------ARR11(3)                                                                               --- ----->ANAC46                                                                                    ---- ----->ANAC58                                                                            <-----------ARR10 ----->ANAC55(2)                                       --------->GLK1(2)                 --------->GLK1(2) ----->ANAC58            --------->TOE2(3) --------->YAB1--------->YAB1  <----------ID1 <---------GLK1(2)   cgcgatcttgcttaacgcctacacaaatctcaaaaattcaaaaaatcacaatcggagaatcaaaaaacacataagaagacaagagtgagagaatctaaga  17263100            --------->At4g35610     ----------->HVH21   <---------ANAC55(2)   <---------ANAC55(1)           <------NtERF2                                                    <--   <---------ANAC58             --------->LBD16                                                  ----   <---------ANAC46            <---------ANAC46                                                <-----   <---------ANAC58     <-----------HVH21                                                      ------ ------>HSFB2a(1)    <---------ANAC58                                                <----------DOF2 -------HSFB2a(1)    <---------ANAC58                                         <---------ANAC58 <----- -------HSFC1(2)   --------->ARR11(3)                                   --------->ARR11(3)     <----- ------>HSFC1(2)   <---------ARR11(3) ---------->DOF2    --------->CCA1(2)    <---------ANAC58 ------ --->TEIL <------ZmHOX2a(1)   <---------LBD16           <----------ID1  <---------ARR11(3)    <------   accttgcgtgaaggagatgaagagcttgtcatggcggagacaaagagagagagagagagagacgaagacagagaggtcttgcttaagcttttgtctggat  17263200                                                                                                    -                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                            <---------LBD16     =====                                                                            <---------ANAC46    -----                          <------------CBF                            <---------ARR11(3)        -----                         --------->ATHB51                             --------->ARR11(3)        <----   <<<<<<<<<TBF1         --------->ATHB12                             --------->AHL20(1)        ----- --------DOF2           <---------YAB1                              --------->ARR11(3)          ----- -->ZmHOX2a(2)        <---------ICU4                                <---------AHL20(1)        <------ ----ARR11(3)         --------->YAB1                                <---------ARR11(3)=============== --->ARR14(2)        <---------YAB1                                 --------->AHL20(1)---------->DOF2 ----ARR14(2)     <---------AHL20(2)                   ---------->DOF2<---------AHL20(1)   --------->ZAT18 ----AGP1         <---------YAB1               ----------->GT1   --------->AHL20(2)  <------ZmHOX2a(1) --->ARR11(3)   *TSS --------->ICU4         --------->DAG2      --------->YAB1   --------->ALFIN1---- ---CCA1(2)--------->HSFB2a(2)             ---------->DOF2----------->GT1  <---------LBD16 <---------ZAT18   ctttcttcttctactcgaatattattattattgaaaatgaaatcaaaaagtgtaaacaaaaggaaataaaaatatttttcggggtgaggaaagggcacac  17263300                                                                       <---------ANAC46    ----------->GT1                                                    <---------ANAC58 --------->DOF2                                                        <---------ANAC58 -------->HVH21                                                    ------->MYC2 ----MYC2                                                          <-------MYC2 ----MYC3                                                          ------->MYC3 --->MYC2                                                          <-------MYC4 ---->O2                                                           -------->ABF1 -----O2                                                           <-------MYC3                ------ ---->TGA1a                                                        ------->MYC4              -------- -----TGA1a                           <---------DEAR3(1)          <---------O2               <------- ==========bZIP_DOF                  --------->RAP2.6(3)          --------->ANAC55(2)        -------- ---->ANAC58                       <---------SPL7                 <---------ANAC55(2)       <-------- ---->ANAC55(2)                    ----------->HVH21              --------->O2             <---------ALFIN1 -----ANAC55(2)                   --------->TOE2(1)               --------->TGA1a         <---------REM1(2) ---->ANAC46                      --------->TOE1(1)               --------->ANAC46        <---------ZAT14 ---->ANAC58 <-----------GT1     <---------At4g35610    <---------ANAC58        ------>ZmHOX2a(1) ---ALFIN1<---------ICU4         --------->At4g35610    <---------ANAC46       --------->TOE1(3) =====bZIP_DOF        <-----------GT1--------->SPL7     <---------ANAC58       --------->TOE2(3) --->MYC3--------->ICU4       <---------YAB1  <-----------GT1     <---------TGA1a<---------ZAT14   gtgaaagagtcaaaattacaaaattaaccattttcatcggacggctattaatcttccttcgtgttcacacgtgtcgtttatccttcactgactccacggg  17263400                                                                             <------ZmHOX2a(2)                                                                             <---------YAB1                                                                         <---------TOE2(2)                                                                         --------->SPL7                                                                       <---------SPL7                                            --------->GLK1(2)          --------->TOE1(2)                           <---------AHL20(2)              --------->At4g35610       <-------TEIL                         <---------RVE1(1)  --------->ARR14(1)       <---------------AtSPL8                        <---------GLK1(2)  --------->ARR14(2)        --------------->AtSPL8 ----->HVH21            <---------ARR11(3) <---------ARR14(2)        <---------------AtSPL3 ->ANAC46               --------->ARR11(3) <---------ARR11(3)        --------------->AtSPL3 --O2              <---------AHL20(2)      --------->ARR11(3)    ---------->DOF2 <---------ICU4 ->O2         <---------AHL20(2)           <---------GLK1(2)  -------->P <---------TOE1(2) -LBD16       --------->AHL20(2)         ----------->ARR10 <---------At4g35610--------->YAB1      <--   acattgaagagtcgattttatttatagatttttttttgtaacaaagattctcttacattgtagctaccaaagtcgtacgatcataagtacataagttttt  17263500                        --------->ANAC55(2)                        <---------ANAC55(2)                        --------->ANAC46                       <-------TEIL                --------->AHL20(2)                <----------DOF2                                  --       <-------TEIL  --------->TOE2(2)          --------->At4g35610                      --------->ATHB12   <---------------AtSPL8                       <---------At4g35610                      <---------ICU4  ---------->DOF2    --------->TOE1(2)  <---------TOE2(3)                               <---------YAB1 --------ID1  --------->TOE2(3)       <---------AHL20(2)               <---------YAB1   --------->ICU4   aagacaaagtacattacattaaacatacgtctccatctatataatgtttcagctttcattctatagtaggcttctaatagtttatgggtcatcatttggc  17263600                                                                                     <------MYB46(1)                                                                            <---------ANAC46                                                                            <---------ANAC58                                                                            <---------ANAC58                                                                     --------->MYB52(1)                                                                   --------->MYB46(3)<------MYB83                                           <------MYB46(1)      --------->ZAT18  <---------REM1(1)                                           <------MYB83   ---------->CDC5<---------MYB52(1) --------->RAV1(1)                        <---------MYB46(3)   --------->DOF5.7(2) <--------P      --   ccaacatgaatagccacttcttgctctagctcaataccatctagtgggtcttgaagaggctcaacgtgaactaccgtttcttgttgtaggtcaataccat  17263700  Previous    Next  AGI:  At5g42990.1    Description:  UBC18 (UBIQUITIN-CONJUGATING ENZYME 18); ubiquitin-protein ligase. similar to ATUBC2-1 (ARABIDOPSIS THALIANA UBIQUITIN-CONJUGATING ENZYME 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G45050.1); similar to ubiquitin conjugating enzyme [Gossypium hirsutum] (GB:ABR14728.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 17261215    to: 17263216    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g43000.1    Description:  unknown protein Range:  from: 17263582    to: 17264430    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version