Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       ------>MYB46(1)                                                                                     ------>MYB83                                                                                    --------->MYB52(1)                                                                                   --------->MYB46(3)                                                                                   --------->AtMYB61                             <-----------ARR10                                    --------->MYB46(3)                           --------->LBD16                                --------->ANAC58      -----                         <---------LBD16                                  --------->ANAC58 <---------bZIP60(1)                       --------->ARR14(2)                             ------>NtERF2--------->DEAR3(1)                       <---------ARR14(2)   <---------ARR11(3)     --------->ZAT2 <---------MYB52(2)                    <---------ANAC58        --------->ARR11(3)     <---------At4g35610     --------->bZIP60(1)                    <---------ANAC58      --------->ANAC58         --------->At4g35610 ------->GAMYB ------>GT1    ------>ZmHOX2a(1)          --------->ANAC58      ---------->DOF2--------->MYB46(3)   -   gtaaattgagcaatctccttctgcgtctccggttctaatctcccaagctcttgtgcgaaagactgcaaaagctgcctcgaaaccaccaacgggacatcat  17257600                                                                                  --------->DAG2        ----------->GT1          --------->YAB1                                  ---------->DOF2       ----------->GT1  --------->ANAC58                          --------->GLK1(1)            ------    --------->ARR11(3)  --------->ANAC58             <---------YAB1      --------->YAB1--------->At4g35610 ---->At4g35610        ------------------------>ANAC81      <-----------GT1<----------ID1      <----- --------->DOF2       <------ZmHOX2a(1)           --------->GLK1(2)   <---------HSFB2a(2)     <------   cggaaagaactggaaaaattgtgaggaagcaaaaatcaaaatcaaaccagaaattctgatataaaccgaattccataagaacaaaaagcagttgtcgaat  17257700                                                                             <---------MYB46(3)                                                                             ========================                                                                             ========================                                                                             ------>ZmHOX2a(2)                                                                            =========================                                                                            =========================                                                                            <------ZmHOX2a(2)                                                                           <---------ARR14(2)                                                                           --------->ARR14(2)                                                                           <---------ARR11(3)                               <---------GLK1(1)                           --------->ARR11(3)                               --------->GLK1(1)                --------->ZAT2 ->TEIL                        <---------At4g35610      ------->TEIL <---------HSFB2a(2) ----ARR11(1)                  --------->At4g35610------>ZmHOX2a(2)  --------->HSFB2a(2)         <--- ---CCA1(2)          ---------->DOF2      <---------At5g28300   <---------ZAT2<-------GAMYB<---------ZAT14   ctcttatgaagttgaaaccatgagaaagaagggagatgcgaaattactgtgatcgatgaatctctgagcttggagaagatcgttggaagagagaacagag  17257800                                     <---------WRKY38(1)                                   <-----------HVH21                                  <------MYB46(1)            <-----------GT1       <------MYB83                    <-------TEIL         <---------------AtSPL3   <---------MYB46(3)        ---------->DOF2              <---------GLK1(2)  <------ZmHOX2a(1)              <---------AtMYB61       <-----------HVH21               <---------ARR11(3) ========HOX2a_HOX2a            <---------MYB52(1)     --------->SPL7                    --------->ARR11(3) ===HOX2a_HOX2a                <-------GAMYB           <-------TEIL                <---------At4g35610 ========HOX2a_HOX2a          <---------ANAC58      <---------ANAC58               --------->At4g35610 ===HOX2a_HOX2a               <---------ANAC46      <---------ANAC58        <---------ANAC58 ---ZmHOX2a(1) <---------ZAT6 <---------ANAC58  <---------At4g35610         <---------ANAC58<--------   gagaggatgagtttgtactgttcgattttctggcgttggtcaccgattgcagaagcgttcgtcaaagcttcatccatggcttctcttctgagattttctc  17257900                                                                                                 <---                                                                                                 ----                                                                                              <------                                                                                              -------                                        <---------GLK1(1)                             <-----------TBP                                     <---------YAB1          *TSS                   --------------->AGL15                         --------->TOE1(3)          <----------DOF2                 <----------DOF2 ---GT1                  --------->TOE2(3)          <---------DAG2                  =================   tcccgcttcgattgaaaccctaagaaaccttacaaggttttgatttctctctcgctttttttttttttttttttggagtttgctctctttttatattaaa  17258000                           ----------->HVH21                          <---------MYB52(1)                         --------->LBD16                        <---------DEAR3(1)                        <---------ATERF1(2)                     <-----------HVH21                   -                        --------->ATERF1(2)             <---------------AGL15                   -----                        <---------ANAC46               --------->ANAC55(2)                      <----                   <---------ANAC58                    <-----------------AGL1                   -----         ------>NtERF2 <---------LBD16                 <-----------------AGL2                   <----   --------->MYB52(1)----------->HVH21                 <-----------------AGL3                  ------ ------AHL20(2)    <---------ANAC58       <----------DOF2      ----------->GT1                 <----- ----->AHL20(2) --------->GLK1(2)         <---------DAG2--------------->AGL15           --------->ANAC58 ---AHL20(2)   <---------GLK1(2)    --------->ALFIN1 <---------AHL20(2)                 --------->ANAC58 -->AHL20(2) ----------->ARR10 ------>ZmHOX2a(2)     <-----------GT1               <---------------AtSPL8 ========================================================================MADS_MADS --------------->AtSPL8   aaaataaacggggactagattctgtgccggtgatcggagaggcgctttacaaaatttacttaatatggtcacaactcatatgagattagtacccaaaata  17258100           <---------AHL20(2)           --------->AHL20(2)         --------->AHL20(2)         <---------AHL20(2)       --------->AHL20(2)      --------->AHL20(1)      <---------AHL20(1)     --------->AHL20(2)                                                <---------AHL20(2) <---------AHL20(2)                                                   <---------AHL20(2) --------->AHL20(2)       --------->YAB1                              --------->AHL20(2) -------->AHL20(2)--------->AHL20(1)                              <---------YAB1 ---->AHL20(2)    <---------AHL20(1)                              <---------AHL20(2) -----AHL20(2)   <---------AHL20(2)                            <---------AHL20(2)                 --- ---->AHL20(1) <---------AHL20(2)                  --------->MYB52(2) <---------AHL20(1)      ------>MYB46(1) -----AHL20(1) --------->AHL20(2)                <---------MYB52(1)--------->YAB1           <-------- --->AHL20(2)<---------AHL20(2)          <---------AHL20(2)   --------->AHL20(2)         <-----------GT1 ----AHL20(2)--------->AHL20(2)        <---------AHL20(2) --------->AHL20(2)       <--------P ------>MYB83   aattaaaatatatatatatatatattaagcataaatactatatttttttttgttagttcataaattttataattaatttgtgatggtaagtttaccaaat  17258200                                               <---------AHL20(1)                                <---------ARR11(3)                                --------->ARR11(3)                                 <----------DOF2                                --------->AHL20(2)                              <---------ARR11(3)                                <---------AHL20(1)                              --------->ARR11(3)                                <---------AHL20(2)<---------AHL20(2)        --------->At5g28300                                --------->AHL20(1)--------->AHL20(2)       ----------->GT1                        --------->MYB46(3)     --------->ARR11(3)        --------->ZAT14 ------>ATHB12  --------->AHL20(2)             <---------ARR11(3)        <---------ZAT14       ------ -MYB59 --------->AHL20(2)   --------->AHL20(2)--------->AHL20(1)    <-----------GT1          -------   tgattgtagattaaaaaaaaaaatcaacaaataatatattgtttagaaatatttttatatgtgagcctaaattactacagtaaatcttttacacaaataa  17258300                                                                              ----------->GT1                                                                             <------ZmHOX2a(2)          --------->ATHB12                  <---------YAB1                  <---------ARR14(2)       <---------ANAC46                   --------->YAB1                    --------->ARR14(2)    --------->ANAC46                  <---------AHL20(2)                ----------------->AGL1    --------->bZIP60(2)           <---------RVE1(1)                <---------YAB1    <---------O2                ----------->GT1                  --------->YAB1                   <--    --------->O2               <---------TOE2(3)                <---------YAB1------>ZmHOX2a(2)   <-- --->AHL20(2)              --------->YAB1 <---------ICU4------->MYC3  <-----------GT1             <-- -->AHL20(2)              --------->ICU4 <---------YAB1 <-------MYC3--------->YAB1 ---------->DOF2---   aaaaacacgtcgtgatttggaaaacacgatgatgaggtattttatgatgacaataccacgtttaatattatgataccagatcggaaaaagatgatatgtt  17258400                                                 <---------MYB46(3)                                             --------->AHL20(2)                                             --------->ATHB51                                             <---------ICU4                                             --------->ATHB12                                             <---------AHL20(2)                                            <---------YAB1                                            --------->ICU4                                          --------->YAB1                                          <---------ICU4                                         --------->AHL20(2)                                         --------->ICU4                                         <---------AHL20(2)                  ----------->GT1                                    --------->TOE2(3)                  --------->ANAC46                                   ----------->GT1                     --------->ANAC58 -------ANAC55(2)                  --------->ANAC58                --------->HSFB2a(2) -------ANAC55(1)                  --------->ANAC58                <---------HSFB2a(2) -------ANAC46                     <---------ANAC55(2)  ---------->DOF2--------->ANAC58         ----- ------>ANAC55(2)      --------->AHL20(2)<---------ATHB51    --------->GLK1(2)           ------>ZmHOX2a(2)   atgtgttttagagcttagggagcaatttaagatggaaacgtaaataattatttgttgagaaagaatcgactagaagcaatcgaaaaattgatcgaatggt  17258500  Previous    Next  AGI:  At5g42970.1    Description:  COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8). Identical to COP9 signalosome complex subunit 4 (CSN4) [Arabidopsis Thaliana] (GB:Q8L5U0;GB:Q9FMM1;GB:Q9SW74); similar to 26S proteasome regulatory subunit, putative (RPN5) [Arabidopsis thaliana] (TAIR:AT5G64760.1); similar to 26S proteasome regulatory subunit, putative (RPN5) [Arabidopsis thaliana] (TAIR:AT5G64760.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61183.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77214.1); similar to unknown [Populus trichocarpa] (GB:ABK93600.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains Inte Range:  from: 17254393    to: 17257961    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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