Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       ------->TEIL                                             <---------ARR14(2)  <---------YAB1                                              --------->GLK1(2) -------->YAB1             <---------ARR14(2)                 --------->ARR14(2)                >>>>> ---------ICU4             --------->AGP1              <---------At4g35610          --------->ATHB12 ------>GLK1(2)            --------->ARR14(2)      --------->ALFIN1 --------->MYB52(1)      <------ZmHOX2a(1) -->YAB1   <-----------HVH21<------ZmHOX2a(2)    <---------ANAC46--------->ANAC46 <---------WOX13(1)   aatcatgaatcgttgtcaaatctaaaacagatcgagacgtttctagtcatcgagtggagatgagaatccgaaacggagagagagattgattagaggaaga  17188800                                                          --------->ATERF1(1)                                                          <---------MYB52(1)                                                         <---------At4g35610                                                        <---------ANAC46                                                        <---------ANAC58                                                        <---------bZIP60(2)                                                       <------NtERF2                                                     --------->ALFIN1                                                    --------->ATERF1(1)                                                   --------->At4g35610                                                   <---------ATERF1(1)                                                  <---------DEAR3(1)                                                 <------ZmHOX2a(1)                  <---------------AGL15        --------->ALFIN1                  <----------DOF2           <------NtERF2<-------GAMYB           --------->MYB59                  --------------->AGL15    ------>NtERF2<---------ANAC58         <---------TOE1(3)                 <-----------------AGL3   ----------->HVH21            <------ZmHOX2a(2)            --------->ARR11(3)            --------->DEAR3(1)          <---------ARR11(3)            <---------ARR11(3)            --------->At1g77200         --------->ARR11(3)            <---------ARR14(2)   --------->ANAC58=======================HOX2a_HOX2a            --------->ARR14(2)   --------->GLK1(2)--------->ALFIN1--------->YAB1 <---------TOE2(3)  --------->MYB52(1)    <---------ZAT6   --------->RAP2.3(1)     <------ZmHOX2a(2)         --------->ATHB12 >>>>TBF1  <------ZmHOX2a(1)     --------->ANAC58=============================HOX2a_HOX2a <---------AHL20(2)   agaataccgaagaggattttcttttagtggaagagaagctatcgccgacgaggaggtgccgttgccgatcacgatctagggtttaggtttatttgattag  17188900             <------NtERF2       ----------->GT1            --------->LBD16     *TSS   ---------->DOF2          <---------LBD16      ----------->GT1                                                      -         --------->At4g35610   <---------ANAC46                                                     -     <-----------HVH21        --------->ALFIN1          <---------AHL20(2)              <---------REM1(2)  <---------O2               --------->ZAT14        <---------RVE1(1)                  <-------------  ================================================bZIP_DOF                             --------------  --------->O2               <---------ZAT14       <---------ARR11(3)                  <---------HSFB2a(2)  --------->TGA1a            --------->ZAT18       --------->ARR11(3)          <-----------GT1     --  <---------TGA1a           --------->ALFIN1 ---------->DOF2                  --------->AHL20(2)<----   cgactcgtgtgagccggagagagagagagagtgtggtgaaaaaaagagaaagagatattaatatgggtttattttgcaaataaactattctacaaggagg  17189000                                                                                <----------DOF2                                                                         <---------WOX13(1)   <---------AHL20(1)                                                   <------------CBF   --------->AHL20(1)                                                 <---------YAB1   --------->AHL20(2)                                                 <---------TOE1(3)     ---------   <---------AHL20(2)                                                 <---------TOE2(3)     ------>NtERF2 -------->YAB1                                                  <---------ARR14(2)        <---------LBD16 ---------->GT1        ------------>CBF                         --------->ARR14(2) <---------MYB46(3) --AGL15              <-----------GT1                           <---------ARR11(3) <-----------RAV1(1) ->AGL15--------->AHL20(2)  <------------CBF   <-----------TGA1<------ZmHOX2a(1)------>ZmHOX2a(1) ------->ICU4      ----------->GT1            --------->YAB1   ======================HOX2a_HOX2a   -- --ZmHOX2a(1)    ---------->DOF2    ------>ZmHOX2a(1)    --------->MYB52(1)   ------>ZmHOX2a(2)    <-   aataataaaataaactatagaaagttacaatattggtcctcgtcaaaatcgtcataacataacgaggattttaagattgatccttttgttgctccggctc  17189100                                                                       --------->ATHB12                                                                     <---------WOX13(1)                                                               --------->ARR11(3)                      <---------ZAT14                      --------->AHL20(2)             ------>MYB46(1)                              <---------YAB1             ------>MYB83                                 --------->ICU4                  -----------           <---------MYB59                            <---------ARR11(3)   <---------AHL20(2)     --- >LBD16 <-----------GT1      <------------CBF   --------->AGP1 <---------ARR11(3)      --------->CCA1(2) ------->ARR14(2)     --------->ZAT14      --------->MYB52(1) --------->RVE1(1)    --------->AHL20(2) --------ARR14(2)<---------ZAT14         <---------MYB52(2)<---------AHL20(2)      <---------AHL20(2)   agaaccgaataaaccaaactaaactgaactggattggaaggaaacgaacagaactagataattaatatctgaatgatttttttaaaaaaatatgggaata  17189200                                                                             --------->HSFC1(2)                                                                             <---------HSFC1(2)                                                                             --------->HSFB2a(1)                                                                      ------>MYB46(1)                                                                    <---------MYB111(1)                                                                    --------->AtMYB61          <---------GLK1(2)                            <---------DAG2 ------>MYB83    --------->YAB1   --------->At4g35610                 <-----------HVH21     ---------->ID1  <---------HSFB2a(1) >GT1 ---------->DOF2                 --------->TOE1(3)<----------DOF2-------->P     <---------YAB1 ------->DOF2                   --------->ANAC46  ---------->DOF2<---------ALFIN1  <---------At4g35610   aaaagagctaaagcttctctctctcttctctctcacaaaaccttcagagagggaaagctttttgtctccacctacaagaattttccgatgatagccgttc  17189300                                                              ----------->GT1                                                             --------->ANAC58                                                             --------->ANAC58                                                             --------->ANAC46                                                            --------->SPL1(2)                                                            --------->RAP2.6(3)                                                            --------->SPL7                                                           <---------SPL1(1)                                                           --------->SPL1(1)                                                          <---------SPL7                                                          <---------SPL1(2)                                                        <---------------AtSPL3                                                        --------------->AtSPL3                      <---------ARR11(3)                --------->HSFB2a(2)           <----------DOF2     <---------ARR11(3)       <---------HSFB2a(2)  --------->YAB1  --------->AHL20(1)  --------->ARR11(3)               <------------------SPL14  <---------AHL20(2)  <---------ARR14(2)             --------->ARR14(2)   <----------DOF2  --------->AHL20(2)  --------->ARR14(2)      --------->WRKY38(1)  --------->ARR14(2)              <- <---------ATHB12 --------->LBD16             ----------->HVH21    <---------ARR14(2)          <----- --------->AHL20(2)  <---------CCA1(2)      --------->At4g35610   <---------GLK1(1)           <------NtERF2 <---------AHL20(2) <---------MYB52(1)      <---------At4g35610   --------->GLK1(1)   <---------ARR14(2) <---------ATHB51<---------LBD16  <----------DOF2    <---------ARR14(2)------>ZmHOX2a(1)    <--------   caaataatttgggcttttgcccggtatcttctagctcttttagtggagatgaccggttcccgtacggcaaatcctgctttcataagaggttttggccgct  17189400                                        --------->YAB1                                     <----------DOF2                                    <---------ANAC58       <---------ANAC58          <---------WOX13(1)                          --------->CCA1(2)       <---------ANAC46        --------->ATHB12                             <---------GLK1(2)       <---------ANAC58       <---------YAB1                                <---------ARR14(2) --------CCA1(2)            <---------At4g35610                             --------->ARR14(2) ----ANAC46       <---------ATHB12  <---------ANAC58                --------->TOE2(3)     --------->ICU4 -RAP2.6(2)     --------->WOX13(1)  <---------ANAC46           <---------ATHB12      ----------->GT1   tgtatccttgctcgtagtcaatcagttttatgctgattgctttgatattttagttttgtttttcaataaatctcaacagatttgagatggtaattagttt  17189500                            <---------ANAC46                            <---------ANAC58                  --------->AHL20(2)                  <---------AHL20(2)       --------->HSFC1(2)           --------->ICU4              <---------TOE1(3)            <---------HSFC1(2)      --------->ANAC58              <---------TOE2(3)            --------->HSFB2a(1)     --------->ANAC58              <---------YAB1<---------ANAC58                     ---------->DOF2           --------->ATHB12          --------->ANAC55(2)              <---------HSFB2a(1)--------->WOX13(1)     <--------P     <          <---------ANAC55(2)       <----------DOF2       --------->GLK1(1)     <---------LBD16     -   taggtgctagttacttaagattaatttctgtcttgtgtctttagaaacttcgatttgcagaaatctatcaagcgattatgtcttcgggttgaaagattga  17189600                --------->YAB1               <---------YAB1            <---------YAB1           <---------ANAC58           <---------ANAC58       <---------At4g35610  --------->KAN4(2) --------->HSFB2a(1)                                                                 --------->ATHB12 <---------HSFB2a(1)                                                                <-------TEIL <----------TaMYB80                                                     --------->MYB55(2) --------->KAN4(1)                                <---------ALFIN1      <---------MYB46(3) <---------KAN4(1)       <---------DAG2  <---------AHL20(2)             ----------->GT1             < ---------KAN4(2)        <----------DOF2 --------->AHL20(2)           <---------MYB52(1)        ----- --------->TaMYB80<---------YAB1      <----------DOF2  <---------MYB52(1)<-------GAMYB          <----   agaatattccgatgcttattatgattcctttttgctgtgtcttttaaatggagcaccgttcagttttatttcggtggttacaaggattcattgtgcgatg  17189700  Previous    Next  AGI:  At5g42820.1    Description:  ATU2AF35B; RNA binding. similar to ATU2AF35A, RNA binding [Arabidopsis thaliana] (TAIR:AT1G27650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66301.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145) Range:  from: 17187440    to: 17188932    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g42825.1    Description:  contains domain Kazal-type serine protease inhibitors (SSF100895) Range:  from: 17189192    to: 17189970    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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