Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->At4g35610                           <---------At4g35610                        <---------MYB52(1)                       <-----------TGA1                       <-----------HVH21    <-----------HVH21               <---------ICU4              --------->ANAC46               --------->YAB1              --------->ANAC58              <---------ATHB12             --------->TGA1a                              <---------GLK1(2)              --------->ICU4    <------------MYB.PH3(2)                     <--------HAHB4            --------->GLK1(1)   --------->MYB46(3)<---------ALFIN1          <---------ICU4     ------   --------->ARR14(2) --------->ANAC46     --------->ANAC58  <---------YAB1<---------YAB1      ------ ------>MYB52(1) <---------YAB1 =====================MYC_MYB --------->AtLEC2       --------->LBD16   caacggtttctcagaaatcatcatccgtcatctaacaaacttcacaagtcagacaccttgatcatgctaagaagaccatcattttccacagataatcaac  16955300                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                            <--------                                                                                      <----------DOF2                                                                                  ------>ZmHOX2a(2)                                                                                 --------->ARR14(1)                                                                                 --------->CCA1(2)                                                                                 <------ZmHOX2a(2)                                                                                --------->ARR14(2) <-                                                                                <---------ARR11(3)<--                   --------->HSFC1(2)                            --------->DAG2 --------->AGP1-------                   <---------HSFC1(2)                           ---------->DOF2 <---------ARR14(2)<--                ---------->DOF2                           --------->YAB1        --------->ARR11(3)---               --------->YAB1                            --------->ICU4        <---------GLK1(1)-----              <---------ATHB12                       <---------------------WRI1--------->GLK1(1)----- -->P       --------->WOX13(1)                    <---------ANAC58            ----------->ARR10<----- ->TEIL   <---------ATHB12                        <---------ANAC58    <---------YAB1--------->LBD16--   ctgcaaatgcaaatcaatcaaagcttcttcaagttgtatacaatctcatgaggcttgcgatgatcaaaaagcattatagtgagatccgcttattctacca  16955400          --------->ICU4 -->MYB46(1) ---->P ---------->DOF2 -->MYB83<---------TOE2(3) ----MYB111(2) --->AtMYB61 ----MYB55(2) --->MYB46(3) ----MYB111(1) ---GT1--------->AHL20(2) --------ALFIN1 -------ATHB12 -->MYB46(3) -------MYB55(2) ------>MYB46(3) ---->MYB55(1)                <---------MYB59                                            --------->YAB1 ---->ANAC46             ---------->DOF2                                                <---------ATHB12 ----MYB46(2) --------->AHL20(2)                           ---------->DOF2              <<<<<<<<<ARR2 ------->AtMYB61    ----------->GT1       ------------------------>ANAC81     <---------TOE2(3)   ---   accactcgattaaagattaaacatgtaaaaagcctaactccaaaattccaacgaagtaactcaaagaagcctacaaaattaagtttcacaatcaaactac  16955500                                                                                  --------->HSFB2a(1)                          --------->ANAC58                                        --------->HSFC1(2)                          --------->ANAC58                                        <---------HSFC1(2)                 --------->ANAC46                                                 <---------HSFB2a(1)                 --------->ANAC58                                            --------->HSFB2a(2)                 <<<<<<<<<<<<<<<<<LFY                                        <---------HSFB2a(2)                 --------->ANAC58                                     <---------CCA1(2)          <--- ------>ANAC46 <-----------GT1                                --------------------->WRI1 ---------->DOF2   aagacgcgtctgcaatttcacacaatggacgaaattcaacaaattcgaagaacaatttcactcacattgagcatatcacccagaagtttcgaaaagagat  16955600                                                                              --------->TOE1(1)                                                                             <---------LBD16                                                                   <--------ATHB1                                         --------------------->WRI1--------->ATHB12                                         --------->LBD16           <---------ICU4                 ---                 <----------DOF2         <---------LBD16           -------->HAHB4              ------                <---------ANAC58   <----------TaMYB80              --------->ATHB51            ------     --------->ETT(2)              --------->At4g35610            <---------AHL20(2)       <---------WOX13(1)     <---------ETT(2)        --------->LBD16  <---------GLK1(1)   <---------ATHB51      <---------YAB1     ----------->HVH21   <---------ARR14(2)   --------->GLK1(1)   --------->AHL20(2) --------->TOE1(2) --------->MYB46(3)      --------->ARR14(2)--------->LBD16        --------->ICU4  --------->GLK1(1) ----TEIL       <---------ANAC58  <-----------ARR10 --------->DEAR3(1)    --------->ARR11(3)   ------   tcatccatcgacagagttgctttcccaaatccagagcatcttccccagaaatcaccgaagaagatgaaataattgagacctcggagacctaagattgacg  16955700                                        <---------ARR11(3)              --------->AHL20(2)                  <----------DOF2--------->AHL20(2)          <---------At4g35610        <---------ALFIN1   --------->AHL20(2)          --------->At4g35610 --------->AHL20(2)     <-----------GT1   <---------AHL20(2)<------ZmHOX2a(2)   --------->At4g35610   <---------GLK1(1)  <---------AHL20(2)--------->ARR11(3)   ----------->GT1--------->AHL20(2)    --- ---->TEIL    *TSS<---------DAG2 <---------AHL20(2)  --------->DAG2    --------->AHL20(2)     <------ --->ANAC46   ---------->ID1    <---------AHL20(2)  ---------->DOF2    <---------AHL20(2)    <------- --->ANAC58<---------DAG2  <---------AHL20(2)   --------->ZAT14    --------->AHL20(2)        -------- --->ANAC58<----------DOF2 <---------AHL20(1)   <---------ZAT14    <---------AHL20(2)    --------->AHL20(2)   catcgatttcccacttttcccttttttattttattttaaatagatcatactgcagaaagcggaagctaaaaaaataaataaaaaacaaaaaaaaaataaa  16955800                         <---------WRKY38(1)                         <---------WRKY12                  --------->ATHB12                  <---------ICU4                  --------->ATHB51                  --------->YAB1                                    <-----------GT1       --------->ZAT2  <-----------HVH21                       <---------AHL20(2)       <---------At4g35610                          <---------AHL20(2)                         ------       --------->At4g35610                          <---------AHL20(1)                        <------ -------->GT1    <---------ATHB51          <----------DOF2     --------->AHL20(2)     <-----------GT1 ---AHL20(2)     <---------ATHB12          <---------DAG2----------->GT1          <---------ICU4 --AHL20(2)      --------->ICU4    --------->YAB1   --------->AHL20(1)        <-----------GT1 <------ ->AHL20(2)  ------------>CBF      <---------GLK1(2)--------->AHL20(2) --------->TOE2(3)      -------   tggaaattaagctgactcaattatgggtcaattgcaagaatatcgctttttcaataaaatagtaaaaaattaacctcatattactaattaacatcagatt  16955900                                          --------->TOE2(3)                 --------->MYB52(1)       --------->YAB1                ------>ZmHOX2a(1)         --------->TOE1(3)        <----------DOF2     --------->ZAT14        <-------TEIL<-----------ARR10          <---------DAG2     <---------ZAT14----------->GT1    <---------CCA1(2)--------->At5g28300                   <------ --->CCA1(2)  ------>ZmHOX2a(2)  <---------MYB46(3)    ----------->GT1                        ------- ---ARR14(2) <------ZmHOX2a(2) <---------ZAT2       --------->MYB52(1)                     <xxxxxxxxx ---GLK1(2) --------->ARR14(2) --------->At4g35610  <---------DOF5.7(2)            ---------->DOF2 -->ARR14(2)<---------ARR14(2) <---------At4g35610--------->DOF5.7(2)  <---------LBD16  ----------->GT1   tgggaagtatagtggatcctatcggtaacatacagctgttcaaatcttaactgttaacggtgataaaaactttttcggaatactgcaaagttgtaaaaaa  16956000          ---------->DOF2       --------->HSFB2a(2)       <---------HSFB2a(2)      <---------TOE1(1)               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------TOE2(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          -   <---------SPL7            <---------At4g35610                                           ---------- <---------------AtSPL3      --------->At4g35610       <----------DOF2                    ----------- <---------------AtSPL8    --------->DAG2  <----------DOF2                      xxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---AHL20(2)           --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   --------->MYB52(1)      - -->AHL20(2)        ----------->GT1----------->GT1<-----------GT1 <----------DOF2     ---------->DOF2 xxxxxxxxxxsmallRNA(fl3)  ---------->DOF2  <---------DAG2    ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   atagttgtacgagaaagctatatagtaataaagctgagagtaaaactttttgtaacgctttaaaaaagcttttgtaattaacagaaataaaagcggtaca  16956100                                                                                    <---------ICU4                                                                      <---------ARR14(2)                                     <---------AHL20(1)               --------->ARR14(2)        -----                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ICU4  --                            ---------->DOF2                  ---------->DOF2       <------ZmHOX2a(2)                           --------->YAB1                   --------->YAB1         <---------YAB1 <--     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <---------ATHB12       <---------ARR11(3) -------->YAB1            <---------ATHB12                ------>MYB46(1)         --------->ARR11(3) ->GT1  <----------DOF2  ------>MYB46(1) <----------DOF2  ------>MYB83<-----------GT1 <---------YAB1 ---->AtSPL3             ------>MYB83<---------ARR11(3)  --------->WOX13(1)<---------MYB52(1)   ----- ---------->GT1         --------->WOX13(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ------   aattgtaatactttgtttttgttcaccaatcaaagccaatatactttgtttttgttcaccaatcaaagctagtatccgttttgagatcattactgaaatt  16956200  Previous    Next  AGI:  At5g42360.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At5g42360 [Arabidopsis Thaliana] (GB:Q9FII1;GB:Q8LC89); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G42350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66257.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro Range:  from: 16953361    to: 16955714    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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