Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     >>                                                                                                 ----                  <---------AHL20(2)        --------->DOF5.7(2)                                  <---           --------->TOE2(3)       <---------DAG2--------->AHL20(2)        <---------ICU4       -----     --------->YAB1                <----------DOF2<---------AHL20(2)    --------->YAB1 --------->DAG2   <---------TOE2(3)            <-----------GT1  <---------AHL20(1)    <---------YAB1 ---------->DOF2   <---------ANAC55(2)      <------ZmHOX2a(1)    <---------AHL20(2)   --------->ARR11(3)        ----- --------->AHL20(2)--------->AHL20(2)       <---------MYB52(1)        <---------ARR11(3)----------->GT1 ----->AHL20(2)   --------->AHL20(2)       --------->TOE2(3)    --------->TOE2(3)  --------->AHL20(2)   aaattaagtataacatcaatataaattataggattaacttttcatcgttaattttttttttaaaaacataaatatcataatgtcattaaaaagtaaaaat  16932600                                                              <---------ATHB51                                                              --------->AHL20(2)                                                              <---------AHL20(2)                                                           <---------AHL20(2)                                                          <---------AHL20(2)                                                          --------->AHL20(2)                                                         <---------YAB1                                                       <---------ICU4                                                       -------->ATHB1                               <---------AHL20(1)     <---------YAB1               --------->AHL20(2)                               --------->ARR11(3)     <---------AHL20(2)           <---------AHL20(2)        --------->ATHB12       --------->AHL20(1)     --------->AHL20(1)       <---------YAB1       <-------TEIL            <---------ARR11(3)     --------->AHL20(2)     --------->ATHB51 >>>>>>>RAP2.2              <---------AHL20(2)        --------->ICU4      --------->YAB1 ----->ARR11(3)             --------->AHL20(2)   --------->YAB1   <---------AHL20(2)       --------->ANAC55(2) ------ARR11(3)         <---------YAB1          ----------->GT1   --------->AHL20(2)   --------->AHL20(2) ---->CCA1(1)         --------->AHL20(2)     <---------AHL20(2)<---------ICU4--------->AHL20(2)    -- ---->RVE1(1)         --------->YAB1        --------->AHL20(2)--------->ICU4 <---------AHL20(2)  <---   atctaaaaattcattggtttaaaattataaaaaaatatttcatatataaaatgaaaattattaaataattaaacaagaattatttttaaatatatgtaat  16932700                      ---------->DOF2                               <---------REM1(1)            --------->ANAC58                            --------->ANAC46           <------ZmHOX2a(2)            ----------->GT1                            --------->HSFB2a(2)   --------->TOE1(2)     <-      <---------AHL20(2)                               <---------LBD16 ----------->GT1             --     --------->AHL20(2)                                <---------HSFB2a(2) <-------TEIL          ---- ------->ZAT6    ---------->DOF2           <---------AHL20(2)      --------->ARR11(3)          ------ --------GT1--------->ANAC58              --------->AHL20(2)   ---------->DOF2   <------ZmHOX2a(1) --   aactctataaaatcaagaaaaaagaaaagaaaacaaaaaaactataaaatcaattttctcggaacaaaagatgtagttacataggatcagaacaagggaa  16932800                                                                                                 ----                                                                                                 ----                                                                                           <---------YAB1                                                                                         -------->ATHB1                                                                                         --------->YAB1                                                                                         <---------ICU4         -------->P                                                                     --------->ICU4 --------ARR11(3)              ----------->GT1                                          <---------ATHB51 ------->ARR11(3)             <---------TOE2(3)              <-----------GT1            --------->AHL20(2) ------->ARR10 --------->REM1(2)                 --------->ANAC55(2)                    <---------AHL20(2) ---->DOF2   --------->LBD16  <---------YAB1     <---------ANAC55(2)                 --------->AHL20(2) ------->AHL20(1)      <-----------GT1        <---------ATHB12 <---------YAB1<-----------GT1 <-------   agatattgatcaacccgtgtagaatatacaatatggttaactcttacaatcacttaatcggttttaccattacaaattttaaacacataaattattatcc  16932900                        --------->DAG2                   <---------------AGL15                   --------------->AGL15                  <-----------------AGL1                                                      -------                  <-----------------AG                                                        -------                 --------->ZAT18                                                            ---------                 <---------At4g35610                                                    ------->GAMYB               --------->ZAT18                                                          --------->TOE2(3)            --------->ALFIN1                                                           --------->MYB46(3)          <---------ANAC58                                                            -------->P          <---------ANAC58                                                           ------->GAMYB          <---------ANAC55(1)                          --------->ZAT14              <---------MYB111(2)          <---------ANAC46----------->GT1              <---------ZAT14              <---------MYB55(2) -->ZmHOX2a(1) <---------ZAT18                     <-----------GT1                  --------->MYB46(3) ----->At4g35610 --------->At4g35610    <------------CBF      <---------ZAT6   --------->YAB1 ------- ----GT1 <------NtERF2 ---------->DOF2 <---------ICU4<---------ANAC55(2)  ------------>CBF<---------MYB52(2)   tctgagaagttggcgtgtgtgctcaaaaaggaaataaacaaaaattgcagaaattactgaactagagatagaatgaaacaataacaacaaccacaaacga  16933000                   <---------AHL20(2)                <---------ICU4                <--------HAHB4    ---------->DOF2--------->AHL20(2)         --------->ANAC46             >>>>>>>>>TBF1            - --------->At4g35610                          --------->ANAC58      ---------->DOF2                <- -->ANAC46     <---------YAB1                 --------->ANAC58  --------->ANAC58                   <- -->ANAC58   --------->TOE2(3)               --------->SPL7     --------->ANAC46                   <- >MYB52(1)  ----------->GT1                  ------->TEIL       --------->ANAC58                   <- -->ANAC58 *TSS--------->ICU4     ---------->DOF2            --------->ZAT18         <---------YAB1--   aacagctaaagaaaacgataattaaaaaaaaaaaaaaaaagcttacgaacgccattggagaagagcacgaaaaagaagaagaagactatgcttctcttgc  16933100                                                                 --------->DEAR3(1)                                                                 <---------ALFIN1                                                                 --------->AtMYB61                                                                <---------MYB55(2)                                                              <---------ALFIN1                                                              --------->DEAR3(1)                                                              --------->AtMYB61                                                             --------->MYB46(3)                                                           <---------ALFIN1                                                           --------->AtMYB61      --------->AtMYB61                                   --------->MYB46(3)      <---------ALFIN1                                  --------->DEAR3(1)     --------->MYB46(3)                                 --------->AtMYB61                   <--------    <<<<<<<<<<<<<<<<<LFY                                <---------ALFIN1                    ---------   ------->GAMYB                                       --------->MYB46(3)        ------->GAMYB   --------->AtMYB61                                 --------->AtMYB61           --------->AtMYB61  --------->MYB46(3)                                 --------->DEAR3(1)         --------->MYB46(3)  <---------MYB55(2)                                 <---------ALFIN1           <---------MYB111(2) -------->P                                         --------->MYB46(3)          <---------MYB55(2) ------>GAMYB                                     --------->ANAC46             ------>MYB46(1)<------ --------MYB52(2)                                 --------->AtMYB61            -------->P   <-------- --------MYB111(2)                                <---------ALFIN1  --------->DEAR3(1)------>MYB46(1) --------MYB55(2)                                --------->MYB46(3) <---------ALFIN1  ------>MYB83 --------MYB111(1)        <-----------GT1      --------->ANAC46 --------->MYB46(3)  --------->AtMYB61 ------->MYB46(3)      <---------GLK1(1)  ------>ZmHOX2a(1)--------->DEAR3(1)  ------>MYB83 ---------   aacaaccaccactggtttcaactagatttcactctctctacttcctcactcaccaccaccaccaccaccaccgcttcttccaaccaccaatctcagcttt  16933200     <---------MYB55(2)     --------->MYB46(3)     <---------MYB111(2)   ----------->RAV1(1) --------->TOE1(3) -ZAT2 -------->P      --------->TOE2(3) >ZAT2------->GAMYB <-----------GT1                                                      >>>>>>>>>TBF1 ----DOF2--------->AtMYB61--------->REM1(1)         <-----------GT1                 <---------ATHB12 -At4g35610       <----------DOF2             <<<<<<<<<TBF1                    <-------TEIL >At4g35610  <---------At4g35610           <<<<<<<<<TBF1     ------>ZmHOX2a(1)--------->CCA1(2)    <-   ctctgcaacaacctctgcttctttaccttcaccatctccatcttcttcttcttcttacttctcctcatggaatggtttagatacaaatgaagaagaagac  16933300                                                                                              <------                                                                                          <-------TEIL                                                                                         --------->ARR14(1)                         <---------DEAR3(2)                                             --------->ARR14(2)                      <-----------HVH21                         <-------TEIL  <<<<<<<<<AtCCA1 <------                     --------->DEAR3(1)                        --------->GLK1(2)        <---------ARR14(2)                   <---------At5g28300                         --------->CCA1(2)        --------->ARR11(1)             <---------TOE2(2)                                --------->ARR11(1)        <---------GLK1(2)             <---------TOE1(2)                                <---------GLK1(2)   --------->ZAT6            --------->LBD16                                   --------->ARR14(2) <---------At4g35610           <---------TOE1(1)                  ------>ZmHOX2a(1)--------->ARR14(1)--------->At4g35610         ------>ZmHOX2a(1)              <---------ALFIN1      <---------ARR14(2)--------->MYB59  ---- --------ATHB12  <-------TEIL          --------->ZAT14 ------>ZmHOX2a(1)      <<<<<<<<<AtLHY  -------   aatgaattctcctccgaggttcaccgtcgctacgacttctctccactcctaaaattcctctcaagattcggaccagtcgagttagctctagattcggaat  16933400          <-----------HVH21                                                 <---------ZAT14        <---------HSFC1(2)                                               ----------->RAV1(1)        --------->HSFC1(2)      <---------MYB52(1)                     --------->At4g35610   --------->YAB1 <---------ARR14(2)                                  --------->ANAC46 ---ARR14(2)      --------->ARR14(2)                           --------------->AtSPL3               - ---GLK1(2)       <---------GLK1(2) <---------ZAT6            --------->ZAT14                       - ----->YAB1     --------->LBD16--------->LBD16  <---------------------WRI1  --------->ZAT14   ------- -->ARR14(2)  <---------LBD16<---------LBD16------>ZmHOX2a(2) <---------ZAT14              --------->YAB1   cggaatcagaagcttcaccggaatcgcttaatccggtagagttcgatctcgtcgagtcatacagagcagtaccagcaccatactggcactctctgataaa  16933500  Previous    Next  AGI:  At5g42310.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G22470.1); similar to chloroplast RNA processing1 [Zea mays] (GB:NP_001105879.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83144.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66231.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16933011    to: 16935797    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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