Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->ARR14(2)                <---------ARR14(3)                --------->ARR14(3)                --------->GLK1(2)                <---------ARR11(3)                ---------->DOF2                --------->ARR11(3)      --------->ANAC58           --------->LBD16              --------->ANAC58          <---------ANAC55(2)       --------->TOE2(3)                                               -         <---------LBD16          <---------ARR11(3)                                          -------       <---------ARR14(2)         --------->GLK1(2)                                           <------       --------->ARR14(2)         --------->ARR11(3)                                         -------- ---------ARR11(3)            --------->YAB1   --------->YAB1                             ---------->DOF2   aacatctcaattccgcaaaatcttcagaaaaatcaaaatcttaagccaaaaataaagctccatactcaaacaaatcacataccacaaaaaccgaaagata  16930800                                                                          =================HOX2a_HOX2a                                                                          ------>ZmHOX2a(2)                                                                         <---------GLK1(1)                                                                        <---------AGP1                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                        ------->TEIL                                                                  <------NtERF2                                                                  <---------MYB52(1)                -                                                                 ------>NtERF2                     <-   --------->YAB1                                                <---------RAP2.6(3)          <------  <---------ATHB12         ----------->GT1                       <-----------HVH21            <------ -------->WOX13(1)    ---------->DOF2                            <-----------TGA1             ------- -->ARR11(3)       --------->YAB1                               <---------bZIP60(1)         <-------- ---ARR11(3) --------->ANAC58                 ---------->DOF2   --------->bZIP60(1) ================= ->YAB1      --------->ANAC58           <---------REM1(1)       --------->RAP2.6(2) ------>ZmHOX2a(1)   atcaatcgtaatcgcaaacaataagaaagatgtaaaacctagttgtagtaaagctcaagacccatgccgtcatggatctcatagtccttgagagtgatgt  16930900                                                                                                <----                                                                                               <-----                                                                                               ------            <---------REM1(1)                                                                <-------           <---------------AtSPL8                                                            --------           --------------->AtSPL8                                                       ------>ZmHOX2a(2)           <---------------AtSPL3                                    <---------HSFC1(2) <---------ANAC58    --------->REM1(2)                                                --------->HSFC1(2) <---------ANAC58 ----->ZmHOX2a(2)               --------->ARR11(3)              ------>NtERF2          <------ZmHOX2a(2) --------YAB1                   <-----------ARR10              ----------->HVH21<------ZmHOX2a(2) ---bZIP60(1)    <---------ALFIN1                             ------>NtERF2    --------->ARR11(3) ---ANAC46 --------------->AtSPL3 ------>ZmHOX2a(2)           --------->LBD16 --------->At4g35610 -->bZIP60(1) <-----------GT1   <---------ARR11(3)   <---------MYB52(1)       <---------At4g35610  <- -ZAT14 --------->ARR11(3)<---------GLK1(1)         --------->LBD16 --------->ANAC58  <---------ARR14(2) ======HOX2a_HOX2a        --------->GLK1(1)       <---------LBD16   --------->ANAC58--------->MYB46(3)   gatccttgtagatgttgtaccacttctgaattctgatcttctcggctcgtgttccggtttgtgccgcgacaagcttcttcagatcaccgatcgtgtcatc  16931000        --------->ZAT14      --------->ANAC46                       <---------ALFIN1 -----ICU4                          <-------GAMYB ----YAB1                          <---------MYB46(3)                             <---------ANAC58 --->ICU4              ---------->ID1        --------->AtMYB61     --------->ANAC58             <---- --bZIP60(1)          <-----------GT1       --------->MYB46(3)     --------->ANAC58  ------->TEIL ->bZIP60(1)      <---------DAG2   ------>ZmHOX2a(2)  --------->YAB1              <---------ANAC58 --------ICU4     <----------DOF2 <------ZmHOX2a(2)  <------ZmHOX2a(2)      <---------YAB1     <-----   atcgttacacttcaccctaacttttttccctaaacgatcgttgagaaccacctcgatcatcttcttcgctcgaaaactacaattgcgaaccctagccccc  16931100                                   --------->GLK1(2)                                  --------->ARR14(2)                                  <---------ARR11(3)                                  <---------GLK1(2)                                  <---------ARR14(2)                                 <---------HSFB2a(1)                            --------->HSFB2a(2)                      <---------------AtSPL8                      <---------------AtSPL3                      --------->DAG2                     ---------->DOF2           <---------TOE2(3)                  ----------->GT1--------->HSFB2a(1)                 --------->DAG2  <---------HSFC1(2)                        <---------DAG2         <--             --------->LBD16<---------HSFB2a(2)<---------TOE1(3)           <----------DOF2        <--            <---------HSFB2a(2)  --------->HSFC1(2)         <---------ANAC46                     <---           <---------LBD16<---------LBD16  <----------DOF2*TSS          <-----------GT1       <------ <-----------GT1---------->DOF2 ----------->ARR10    <-------GAMYB  --------->YAB1         --------->ICU4 -----ALFIN1--------->HSFB2a(2) <---------KAN4(2)  <-------TEIL   <-----------TBP      <---------SPL7 -NtERF2  ------>ZmHOX2a(1)<---------ANAC55(2)---------->DOF2<----------DOF2      <---------AtMYB61   aattttctattcctccggaaaagtaaagtacgggaagattctacgcgttaaggctcgttgtgacttttatttataaacttttttttggtcgtacttatgt  16931200                                      --------->TOE2(3)                                      <---------DAG2                                   <<<<<<<ZML2                                --------->HSFC1(1)                                        <----------                                --------->HSFB2a(2)                                   --------->ARR11(3)                                <---------HSFC1(1)                            <------NtERF2                                <---------HSFB2a(2)             <---------DAG2<---------At4g35610                         --------->AHL20(2)                  <-----------GT1--------->ETT(1) <-------       <------------CBF  <---------AHL20(2)              --------->ARR11(3) <---------RAP2.6(2) -------DEAR3(2)        --------->AHL20(2)         <---------YAB1<----------DOF2      <---------ARR11(3) -------MYB46(3)     <---------AHL20(2)           <---------AHL20(2)        <---------DEAR3(1) ------ ------DREB2C(2)     --------->AHL20(2)           --------->AHL20(2)     <-----------RAV1(1) -------- -----RAV1(1)       --------->AHL20(2)--------->TOE1(3)  <---------ARR11(3)--------->RAP2.6(3) <-----   cggtttgagaattggtaatagatttatttaatttctagaaccttatctatattttaatagattttacctttttttttgtcggctaatagattttacttta  16931300                                  --------------->AGL15       <---------AHL20(2)                                 ----------------->AGL2   <---------AHL20(2) ----------->GT1                 ----------------->AGL3   --------->AHL20(2) -GT1    <-----------GT1       <-----------GT1           <---------AHL20(2) ---DOF2--------->YAB1       <-----------GT1          <---------YAB1 --->AHL20(2)       <---------ANAC58                 --------->AHL20(2)                             - ->TOE2(3)<---------YAB1 ------>ZmHOX2a(1)           <---------AHL20(2) <---------YAB1             -- ----AHL20(2)       <---------ANAC58         <----------DOF2<---------YAB1                        ---   attttgtgaattatcaattttggcttcctattttctccatatatagactttgtattaaaattatttttttgtttatatttgaaagtttgtgcaaaaaaaa  16931400                                                             --------->YAB1                                                           <-----------GT1                                                          <-----------GT1                                                      --------->AHL20(2)                         <---------AHL20(2)          <---------AHL20(2)                       <---------YAB1                --------->AHL20(2)                    --------->ICU4                   <---------AHL20(1)                  --------->YAB1      <---------YAB1<---------YAB1               --------->AHL20(2)                --------->TOE2(3) ---------->GT1 --------->TOE2(3)            <---------AHL20(2)               <---------At4g35610 ------->DAG2   --------->TOE1(3)       <---------YAB1<---------AHL20(2)      --------->At4g35610 ------->DOF2<-----------GT1      <---------YAB1 <---------AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   aaaagtttatatttgaaaccttattattaaaaccttgtgattgtgatttttttaatttttttatcatcttgaattctctcagcaaacttaaaaataacaa  16931500                        --------->ORA47(1)                        <---------RAP2.6(3)                        ------>NtERF2                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                ---------->DOF2                                                                    --            ---------->DOF2                                                                       <xx        ------>ZmHOX2a(1)                                --------->ICU4                           xxx        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------YAB1                        <-----       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->YAB1     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <-----------GT1    ----------->HVH21        <---------YAB1      --------->ANAC58         <-------   <-----------GT1     --------->DEAR3(1)     --------->TOE2(3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2)  --------->DEAR3(2)  <-------TEIL<---------YAB1--------->ANAC58        --------- --------->AHL20(2)  --------->At4g35610 --------->CCA1(2)--------->ATHB12      --------->YAB1<------   caattttatcctatcaaagaaagagccgacctctcaaaataagatacatcttaattgtgattattgatgctagcaaactcaaaaataacaacaattttat  16931600                                                                            ---------->DOF2                                                                         --------->MYB46(3)                                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    <------MYB46(1)                                                                    <------MYB83                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  <---------WOX13(1)                                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                --------->ATHB12--------------->AtSPL8                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               <---------YAB1   --------------->AtSPL3                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------RAP2.6(3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)               ------>NtERF2                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)               --------->ORA47(1)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       ---------->DOF2                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ANAC58      ----------->GT1                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ANAC58    ---------->DOF2                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ATHB12  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         < xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxx ------GT1    --------->DEAR3(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxx --AHL20(2)   ----------->HVH21    --------->ANAC58 <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >AHL20(2)   --------->DEAR3(2)    --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <-- -----GT1   --------->At4g35610  ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <----   cctatcaagaaaagagccgacctctcaaaagtaacaaaagcaaaaaccaaaaatttacatagtgtctgattggtaaccaaaagctgtacaagttttttag  16931700  Previous    Next  AGI:  At5g42300.1    Description:  UBL5 (UBIQUITIN-LIKE PROTEIN 5). Identical to Ubiquitin-like protein 5 (UBL5) [Arabidopsis Thaliana] (GB:Q9FGZ9); similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT3G45180.1); similar to unknown [Populus trichocarpa] (GB:ABK94311.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 16929561    to: 16931158    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version