Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                               <---------YAB1                       <                                                               <---------TOE2(3)    <---------AHL20(2)                                                              --------->AHL20(2)    --------->AHL20(2)                                                              --------->YAB1    ----------->GT1     <   --------->AHL20(2)                          <---------REM1(2)          --------->ICU4        ----- ------->YAB1                              --------->ZAT6  --------->TOE2(3)  ------>ZmHOX2a(2)<----- ------->AHL20(2)                        <-----------GT1--------->ANAC58  <---------YAB1    <-------- -------ATHB12  <-----------GT1    ----------->GT1      --------->ANAC58--------->YAB1     --------->AHL20(2)   ataaaaaaaatacagaataaaccaattgggacatgaagagtataaactctactcgcataagcattaatattgtatcatgatcgagtttaaatattaaata  16919300                               --------->YAB1                              <---------YAB1   ------->TEIL           <---------ANAC55(2) ---------ANAC55(2)       --------->ANAC55(2) ---------ANAC46      --------->AHL20(1)        <---------ICU4 ---------YAB1       <---------ICU4            <---------AHL20(2)                                  <- ---->AHL20(1)    <---------AHL20(2)           --------->AHL20(2)                             <------ ----ICU4        --------->AHL20(2)      ---------->DOF2         ------->TEIL    <---------ZAT6   <-- -AHL20(2)       <---------AHL20(2)     --------->AHL20(2)    <---------YAB1   ----------->GT1<------   ttatgtatatgatcaaaaattaaatattatgtattatagcaataaaagattaattacacagtttatgaatcgagtttgacttagtgaaaagtttagcttt  16919400                   <---------ANAC58                   <---------ANAC58                  --------------->AtSPL8                  --------------->AtSPL3                                           <----------DOF2               <--------ATHB1              <---------AHL20(2)                   <-----------GT1     - ----------GT1 -------->HAHB4              --------->AHL20(2)            --------->AHL20(1)        -- ----DOF2      <---------ICU4             <---------AHL20(2)             <---------AHL20(1)        <- -------YAB1  <---------ATHB51            <---------AHL20(1)             --------->AHL20(2)      <--- ---DAG2      --------->ICU4              --------->AHL20(2)             <---------AHL20(2)      <---   attactatcccagttaataattcgtaccaattcgatttaggcaatttaattgtatgaattctatagagaccatattttattgttacttttacacaaatta  16919500       <----------DOF2       <---------DAG2                                            <<<<<<<<<<<<<<<<<LFY    <-----------GT1                                          <---------ANAC46   <-----------GT1                                      <------MYB46(1)  <---------AHL20(2)                                    <------MYB83                                - -------->CCA1(2)                                      <---------TOE2(2)                            - ------->ARR11(3)       --------->ARR11(3)           --------->LBD16                                - --------ARR11(3)       <---------ARR11(3)          <---------ANAC58                              XXX ------TOE2(3)         <---------CCA1(2)            <---------ANAC46                 <---------HSFB2a(2) ------YAB1        --------->AHL20(2)               <---------ANAC58                 --------->HSFB2a(2)   agatttaaactttttttttttttatatatctttcatcgaatggaagtctctcttccgtaggtaatgtggacattggggtttatttttctggcaatacaaa  16919600                                                                              <---------MYB52(1)                                                                             <------NtERF2               ----------->RAV1(1)                                           <---------At4g35610              --------->ZAT18                                              --------->ZAT18         ---------->DOF2                                                   <---------ZAT18     --------->ZAT6                                                      --------->ARR14(2)    --------->ZAT14                                                      <-----------HVH21    <---------ZAT14                          <---------ARR11(3)          <---------ARR14(2)   ----------->RAV1(1)                       --------->ARR11(3)       <---------ANAC58           ----  --------->ANAC46                          --------->At4g35610       --------->ANAC55(2)        <--- -------->ANAC46                       --------->YAB1                 <---------ANAC55(1)      <----- -------->ANAC58                  ------------>CBF                    <---------ANAC55(2)      ------ -------->ANAC58               --------->ANAC58                       <---------ANAC46        ------- XXXXXXXXXXXXXXXXX>MIR2939     --------->ANAC58                       <---------ANAC58        <------   acacacaacactaaagcccacagtgtttgaagcaggcccaataagaagctctcttcaaatttttagactcttgcgtgtccgctagtatcacgactggata  16919700         --------->ANAC58         --------->ANAC58         --------->ANAC46                                                              ------>ZmHOX2a(1) ----->ANAC55(2)             <---------ATHB12                                       ------>ZmHOX2a(1) ------ANAC55(2)           --------->WOX13(1)                                   --------->GLK1(2) ----GLK1(1)            --------->ANAC58                              --------->ARR11(3) --->CCA1(2)            --------->ANAC58                      ------>ZmHOX2a(1) --------->ARR14(2) -->ARR14(2)       ----------->RAV1(2)                     ------>ZmHOX2a(1)    <---------ARR14(2) ---ARR14(2)  *TSS------->TEIL --------->WOX13(1)  <----------DOF2    <---------ARR11(3)   tgtgataacacacgtagacgaacctgaagcaatcactcaaactcaagacttctctttaatcctcctcccaaaaatctcagagaatcctccttcaattcca  16919800                                                                                             --------                                                           <---------ARR14(2)                --------                                                           --------->GLK1(2)               --------->AtMYB61                                                           ------->TEIL                    <---------ALFIN1                                               --------->YAB1                           ------>NtERF2                   <-----------GT1            <---------YAB1  <----------DOF2          <---------ETT(2)             <----------DOF2                --------->YAB1<---------CCA1(2) <---------ARR11(3)         ------>ZmHOX2a(1)                  <---------ICU4<---------ARR14(1)--------->ARR11(3)        ----------------------->TaNAC69(2) <---------ATHB12<---------ARR11(1)  <----------DOF2 ---------->DOF2 <-----------GT1         --------->WOX13(1)--------->ARR14(2)--------->At4g35610   attcaaagctccttccttttttcacatctctcttcttcaaattcaatcatcataaaaatcgaatctttattcttcagagagcttcaatggcgaccacatc  16919900                                                    --------->At4g35610    ---------->DOF2                                                    <---------At4g35610 --------->AtMYB61                                            <---------YAB1            ----------->RAV1(1)                                           --------->AHL20(2)    ---------->DOF2        <---------ICU4                    --------->YAB1 ----------->RAV1(1) ->ANAC46                     <---------TOE1(2)     --------->ZAT2   --------->AtMYB61 ->bZIP60(2)  <----------DOF2------>ZmHOX2a(1)      <---------ZAT2  --------->MYB46(3) <----------DOF2   atcaaacccattactactttcttcaaatttcctcggttctcaaattataatctcagctccaacaccaaaaaccaccacaaagtctcttcctttctcagta  16920000                                                                        <---------At4g35610                                                                        --------->ZAT2                                                                        --------->At4g35610                                                                        <---------ZAT2                  <<<<<<<<<SARD1                                  <---------MYB52(1)                  <<<<<<<<<CBP60g                               <---------ANAC46                 ------>MYB46(1)                               <-------TEIL                 ------>MYB83                               --------->At4g35610               <---------MYB59                              <---------ZAT2            --------->CCA1(2)                               --------->ZAT2           <---------ARR11(3)                              --------->ANAC58   <---------MYB52(1)           --------->ARR11(3)                              --------->ANAC46  <-------GAMYB       ---------->DOF2                                     --------->ANAC58 <-----------RAV1(1)  <---------HSFB2a(2)                           --------->DOF5.7(2)  --------->At4g35610     --------  --------->HSFB2a(2)             --------->GLK1(2)    --------->YAB1<---------At4g35610     <-------   atctctcgaaaaagataccaaatttctcaatcggagaagctaatgaaatcgttaccatcacaagctgcgttagcagctctgttgttctcatcttcatctc  16920100                                           <---------ICU4                                          --------->MYB46(3)                                          <---------ATHB12                                         ------>MYB83                                         ------>MYB46(1)                                         -------->P                                        --------->MYB55(1)                                       <---------MYB111(1)                                       --------->MYB46(3)                                       --------->DEAR3(1)                                       --------->AtMYB61                                       <---------MYB111(2)                                       <---------MYB46(2)                              --------->AtMYB61                      --------->ARR14(2)                             <---------MYB55(2)                     ------>MYB83                --------->MYB46(3)     <---------MYB55(2)           ------>MYB46(1)                <---------MYB52(2) --------->At4g35610         --------->YAB1               <---------TOE2(3)  --------->ANAC58            <---------ATHB12              <---------DOF5.7(2) --------->ANAC58      <---------At4g35610<---------ETT(2)    <----------DOF2          --------->MYB46(3)         --------->At4g35610--------->ETT(2) --------->ANAC58  ------->TEIL  --------->AtMYB61<---------At4g35610<---------ARR14(2) --------->ANAC58------->GAMYB------->GAMYB--------->YAB1     --------->MYB46(3) ->At4g35610  --------->MYB52(1)XXXXXXXXXXXXXXXXXXXX>MIR4227--------->WOX13(1) <----------DOF2 --At4g35610--------->DOF5.7(2)--------->MYB52(1) --------->At4g35610--------->GLK1(2)   cacaagctttagcagttaacgaaccagttcaaccaccagcaccaaccattactgctgaagctcaatcaccaaatctgtcgacttttggtcaaaacgtttt  16920200  Previous    Next  AGI:  At5g42270.1    Description:  VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase. Identical to Cell division protease ftsH homolog 2, chloroplast precursor (FTSH2) [Arabidopsis Thaliana] (GB:Q9FH02); similar to FTSH1 (FtsH protease 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT1G50250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62015.1); similar to Cell division protease ftsH homolog, chloroplast precursor (GB:Q9BAE0); similar to FtsH-like protein precursor [Solanum lycopersicum] (GB:AAQ93011.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Range:  from: 16919714    to: 16922522    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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