Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                            <--------                                                                                            ---------                                                                                           --------->ALFIN1                                                                                           <---------AtMYB61                                                                                           <---------DEAR3(1)                                                              --------->ARR14(2)      --------->MYB52(1)                                                              <---------ARR14(3)     ----------->HVH21                                                              --------->ARR11(3)   --------->O2                                                              --------->ARR14(3)   --------->ANAC46                                                              <---------ARR11(3)   <---------O2<-----                    <---------ZAT18                           <---------ARR14(2)   --------->ANAC58                    <---------ZAT14            <---------ARR14(2)                  --------->ANAC58                    --------->ZAT14            --------->GLK1(1)                   <---------TGA1a         <------ZmHOX2a(2)                     --------->ARR14(2)     --------->ZAT6------>NtERF2        <---------ARR11(3)                    <---------GLK1(2)<------ZmHOX2a(2)--------->ANAC46        --------->ARR11(3)        <---------YAB1              --------->AGP1<<<<<<<ZML2 <---------DEAR3(1)  <------ZmHOX2a(1) --------->ZAT18--------->YAB1           ----------->ARR10   ----------->HVH21XXXX  ==============HOX2a_HOX2a     <----------DOF2--------->GLK1(2)------>ZmHOX2a(2)  --------->TGA1a   accaggataagatcgaagagagtgccctgatcaactttgataaactcagaatcccaagtcttgagatcttcatcactagaacccgacgcgacggtggtgg  16872500                      <---------ANAC58      --------->ZAT2                                      -----                      <---------ANAC58      <---------HSFC1(2)                              <--------                     <---------DEAR3(1)     <---------ZAT2                                  <--------                  --------->MYB46(3)        --------->At4g35610                        <------ZmHOX2a(2)                 --------->At4g35610        --------->HSFC1(2)                        --------->ARR14(3)           --------->At4g35610              <---------HSFB2a(1)                       --------->GLK1(2)        <---------At4g35610              <---------ZAT2                               <---------ARR14(3)        --------->ZAT2<---------ANAC46   --------->At4g35610                          <---------ARR11(3)        --------->At4g35610              <---------At4g35610                          --------->ARR11(3)     --------->At4g35610                 --------->ZAT2                               <---------ARR14(2) ---AtMYB61--------->ZAT2  <---------ARR14(2)                           <---------ATHB12    <-------- -MYB46(3) <---------At4g35610    <---------GLK1(1)           --------->ZAT6          --------->ARR14(2) >MYB55(2)----------->RAV1(1) <---------ANAC46  ----------->HVH21     --------->WOX13(1)------>ZmHOX2a(2) ----MYB46(3) --------->At4g35610 --------->GLK1(1)           --------------->AtSPL3  <-----------ARR10 XXXXXXXXXXXXXXXX>MIR834 <---------MYB46(3) <---------At4g35610 --------->ZAT14      <------ZmHOX2a(1)   tagtagtagcagcagcagcatcggccgtggtttcggatttctcagcagcttcgacatgtctcttacagtactcaatcaccttcgaaaggatcttgcttgt  16872600                           --------->ZAT14                           <-------TEIL                           <---------ZAT14                                       --------->TOE2(3)                           --------->SPL7                                     --------------------->WRI1                       --------------->AtSPL3                              <---------ALFIN1                    --------->ATHB51                                       --------->DEAR3(1)                   <---------YAB1 --------->At4g35610  <<<<<<<<<<MYB80    <------NtERF2                 <---------------AGL15                <---------MYB46(3) ------>NtERF2                 --------------->AGL15        <---------YAB1            --------->DEAR3(1)                <-----------------AGL2       <---------TOE2(2)         <---------ABI4(2) ------>HVH21   ----------------->AGL2       <---------TOE1(2)         --------->ERF1 -ANAC46        ----------------->AGL3    --------->YAB1<---------ANAC46<---------ALFIN1 -ANAC58        ----------------->AGL1   <---------ATHB12              --------->ATERF1(1)        --- -ANAC58        <-----------------AGL1 --------->WOX13(1)            --------->ANAC46             <--   gacattagggagagggataccattatcggtacagtcatcttcaatcatatgtttgatggtttgtgactctagcgccaccgcttcgtcaatttcgaagttt  16872700                                                                             <---------TOE2(3)                                                                         <---------At4g35610                                                                  <---------bZIP60(2)                                                                  <---------O2                                                                  --------->TGA1a        <---------LBD16                                                                  <---------TGA1a       <---------ANAC46                                    <---------DDF1                --------->O2 <------ZmHOX2a(1)                                   --------->ETT(2)               <---------ANAC46    <---------ARR14(2)                                   <---------ETT(2)            ----------->HVH21      --------->GLK1(2) --------->DEAR3(1)             --------->DEAR3(1)      <---------ZAT14  --------->At4g35610 ------>ANAC46                <---------At5g28300--------->At4g35610   <---------RAP2.6(2)  <xxxxxxxx ---------GT1            <-----------GT1         <---------At4g35610--------->ALFIN1 <---------GLK1(2)   tcgccatccgaactcttaagagtgatttttctcaccgtcgacattggtttttgctgagtttagagacgacgtggaggctgaggaagagaatcgtggaaca  16872800                                                                           ------------>CBF                                                                         *TSS                                                                    <---------TOE2(3)                                                                   <-----------GT1                                              <---------ALFIN1     --------->MYB52(1)                                           ----------->HVH21     ------>ZmHOX2a(2)                                         --------->ZAT2         <------ZmHOX2a(2)                ----                                        --------->LBD16         --------->CCA1(2)         <----------             ----------->GT1            <---------ATERF1(1)    --------->AGP1 <------------CBF  -----     <---------ANAC46            ---------->DOF2               <---------ARR11(3)   <----------DOF2 xxxxxxxxsmallRNA(i) --------->YAB1   <---------LBD16          --------->ARR11(3)   <---------DAG2   gagagatgtgtgtatgggttaaatcaaaatgtttttaaagcccggctcacacattgaaccagtgagatctaacgattcccaattgactttttttacctat  16872900                                 <---------------AGL15   --------->AHL20(2)               <---------ICU4   <---------YAB1                <----------DOF2--------->At4g35610                    --------->WOX13(1)  <-----------GT1                --------------->AGL15   <---------AHL20(2)       <---------YAB1 ----->AHL20(2)          <---------MYB52(1)     ----------->RAV1(2) <----------DOF2  <---------WOX13(1) -GT1   --------->AHL20(2)       ==================================================================== ------>TBP         <-----------GT1  ---------->DOF2    --------->AHL20(2)     <----------DOF2<------   aaattttcattttaaaacattttctctgtttttttctttcaaaggaaaacacctgaaaattaattcaactcttttcatcaacttttgattaatcagtagt  16873000                                           --------->AHL20(2)                                          <---------AHL20(1)                                      <---------AHL20(2)                       <<<<<<<<<<GT-3b                                  ----------->GT1                           <---------AHL20(1)                                <---------ANAC58                            --------->AHL20(1)                                <---------ANAC46                       <---------MYB52(1)                                <---------ANAC58                      ----------->GT1                  --------------->AGL15   --------->AHL20(2)          --------->LBD16         --------->ZAT14      <------MYB46(1)                        <---------HSFB2a(2)    <---------ARR14(2)        <------MYB83<---------AHL20(2)         --------->HSFB2a(2)    --------->ARR14(2)       <---------AtMYB61                      <---------LBD16    <---------GLK1(2)      <------ZmHOX2a(1)           --------->ANAC55(2) --------->ICU4    <------- =================================MADS_MADS<---------AHL20(2)    --------->GLK1(1)        --------->ARR11(3) ---MYB46(3)    ------>ZmHOX2a(1) <---------ANAC46  <-------TEIL <---------GLK1(1)        <---------ARR11(3)   tgaacagatactaaactcctctatttgtaggatggtgtgtataatttaattggattcatgtgatttgatttccggtaatatttttctttgaacatctttg  16873100                                  <---------MYB52(1)                            <---------RAP2.6(2)                  <---------YAB1 <---------At4g35610                --------->YAB1<------NtERF2                               <---------HSFC1(1)   <-----             --------->YAB1--------->RAP2.6(3)                            --------->HSFC1(1)<--------      ----------->GT1      <---------LBD16                                <---------HSFB2a(2)  ------  ---------->DOF2 --------->ICU4<---------MYB46(3)        --------->AHL20(2)               <--------- --------->AHL20(2)<---------ICU4<-------GAMYB            <---------AHL20(2)          --------->ZAT18 ---DOF2   <---------TOE2(3)<---------RAP2.3(2)<---------AHL20(2)         --------->HSFB2a(2)  ------   caaataaagagttaagaatcataatcaattgcggcagttgttttgctaattaagttgtattaaaatcatccacattctagaaaccaagtccaccgttacg  16873200                                                                                                    -                                                                                                  <xx                                                                                         <xxxxxxxxxxx                         <<<<<<<<<<GT-3b                                                 <xxxxxxxxxxx                    --------->AHL20(2)                                                   <xxxxxxxxxxx                    <---------AHL20(2)                                              xxxxxxxxxxxxxxxxx                    <---------AHL20(1)                                             --------->O2  ----         --------->AHL20(2)                                                        <---------O2  ---- -----ID1<---------AHL20(2)                   --------->AHL20(2)               xxxxxxxxxxxxxxxxxxxxxx -MYB52(1)      <---------AHL20(2)      <---------AHL20(2)      --------->ANAC46xxxxxxxxxxxxxxxxxxxxx --->ANAC58     <------------------------ANAC81<---------AHL20(2)      ----------->GT1   <xxxxxxxxxxx --HVH21<---------AHL20(2)              --------->AHL20(2)--------->AHL20(2)  <----------ID1 -------- --->ANAC58    <---------AHL20(2) <---------AHL20(2)  --------------->AGL15   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   acaaaacttatttattttttattttatttttcttatttttttttaattttaaatttccattaaaacaaacaacaagttataagacaagtgtccaaacata  16873300                                                                                         --------->At4g35610                                                                                         <---------At4g35610                                                                                   ---------->DOF2                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxx                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <---------ETT(1)            <xxxxxxxxxxxxxxxxxx                                                      --------->ANAC58           --------->MYB46(3)                                                      --------->ANAC58           xxxxxxxxxxxxxxxxxxxx                                                      ----------->HVH21         --------->ANAC58                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxx                                                  --------->ANAC58              --------->ANAC58                                                  --------->ANAC58             xxxxxxxxxxxxxxxxxxxxxx                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->GLK1(2)         --------->ANAC58                        --------->DEAR3(1)           --------->MYB46(3)         --------->ANAC58                       --------->ATERF1(1)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ANAC58            <xxxxxxxxxxxxxxxxsmallRNA(i) -------->ZAT18                               <------NtERF2              xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxsmallRNA(i2)                        --------->ZAT18         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxsmallRNA(le3)                       ------>NtERF2           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxsmallRNA(le3)                  <---------ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxx>smallRNA(le3)                       --------->ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxx ----->ANAC58          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----->ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) x>smallRNA(l2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xx>smallRNA(s2)  <-------TEIL     <xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxsmallRNA(le3)   ---------->DOF2  <---------ANAC46       ---------->DOF2------->GAMYB     < ->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ANAC58      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   agcacacaggctcgaaaacatacacatccaaaagctcaaatccaaggcgcgcaggcccgacaacaagagcaaagcccaaaacaaccaaagaagctgaaac  16873400  Previous    Next  AGI:  At5g42190.1    Description:  ASK2 (ARABIDOPSIS SKP1-LIKE 2); ubiquitin-protein ligase. Identical to SKP1-like protein 1B (SKP1B) [Arabidopsis Thaliana] (GB:Q9FHW7;GB:O65283); similar to SKP1 (ARABIDOPSIS SKP1 HOMOLOGUE), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G75950.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96569.1); similar to unknown [Populus trichocarpa] (GB:ABK92723.1); contains InterPro domain SKP1 component, POZ; (InterPro:IPR016073); contains InterPro domain SKP1 component; (InterPro:IPR001232); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain E3 ubiquitin ligase, SCF complex, Sk Range:  from: 16871419    to: 16872873    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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