Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->ZAT2                                                            ----------->HVH21                                                            <---------REM1(1)    --------->ZAT14                                         --------->ALFIN1 -------->ANAC58                                          --------->At4g35610 -------->ANAC58                                <---------ANAC58<---------At4g35610        <---------DEAR3(1) -------->ANAC46                            <-----------RAV1(2) <---------ZAT2   ---------->DOF2 ------>YAB1<<<<<<<<<<<<<<<<<LFY     ---------->DOF2     --------->ALFIN1    --------->ALFIN1 ------ATHB12                    >>>>>>>>>TBF1  <---------ANAC58--------->At4g35610      --------->CCA1(2) --->WOX13(1)        <------ZmHOX2a(2)--------->DAG2    <------ZmHOX2a(1)<-----------RAV1(2) --------   tcacacaatactcaaaacaatggatcaatagagaagaagaaaagttacaggcgttggaggaggtgaagctgagaagcaggtgtgaaagaagagacggtga  16796100                                                                             <-------GAMYB                                                       <---------GLK1(2)    <---------MYB46(3)                                                      --------->At4g35610   <---------DEAR3(2)                                                      <---------At4g35610  <---------DEAR3(1)        <---------REM1(1)                       <------MYB83             ------------>AtMYB77    <---------WOX13(1)                          <------MYB46(1)         <---------DEAR3(1) <---------AHL20(2)          <---------YAB1    --------->MYB59          --------->DEAR3(1) <---------YAB1--------->GLK1(1)          <---------YAB1                --------->ETT(2) ->At5g28300 <------ZmHOX2a(1)            <---------AHL20(2)            ----------->HVH21  --------->ATHB12   gttttaattgatgaaggagttctaaaattttctgattcgagtttataatttggttcagcttctcatttgaatcgtcgacggttgcaattgcattgatttc  16796200                                  <-------GAMYB                              --------->LBD16                              ------>NtERF2                             <---------LBD16                            <---------LBD16                                              --------->ANAC58                          <---------ARR14(2)           <-----------HVH21                 --------->ANAC58                          --------->ARR14(2)          --------->WOX13(1)                 --------->ANAC46             <---------MYB52(1)  <---------MYB46(3)  ------>ZmHOX2a(2)    --------->ANAC58        <--    <-----------GT1 <-----------GT1        <---------ANAC46               --------->ANAC58        <--   ggtttttatcgaaccgttgatttcaccaattccggcgattgtgttctgtgtttgatccatcaccgaataactagaaacgcgattaaaacacacacaaatt  16796300           <---------ANAC55(2)           --------->ANAC55(1)           --------->ANAC55(2)           --------->ANAC46           --------->ANAC58           --------->ANAC58                       <------ZmHOX2a(2)          <---------LBD16                        <---------ARR11(3)                 --------->LBD16         --------->MYB52(1) <---------ANAC46     --------->ARR11(3)                --------->HSFB2a(2) -------TOE1(3)          --------->ALFIN1<---------TOE2(3)                         <---------HSFB2a(2) -------TOE2(3)       <---------TOE2(3)<---------AHL20(2)       --------->ANAC46  <---------LBD16  --   agggttttgaatcacggaaacatagaggttgagggaaacaatttatgtagagatcaattccaattgacacaactggatgaaatttctgggaacgatgaaa  16796400         ----------->HVH21         --------->At1g77200         --------->DREB2C(2)         ------->GAMYB         --------->DEAR3(1)        --------->MYB46(3)                                                          ---------->DOF2        --------->DEAR3(2)                                                         <------NtERF2      <---------ALFIN1                                   <XXXXXXXXXXXXXXXXXXXXMIR865-3P   ---------->DOF2      --------->AtMYB61      >>>>>>>>>TBF1        <-------TEIL                   --------->RAP2.6(2)     <---------ABI4(2)    >>>>>>>>>TBF1         <---------ZAT18              <-----------RAV1(2)     --------->MYB46(3)>>>>>>>>>TBF1            --------->ZAT18           <------ZmHOX2a(2)   <------ZmHOX2a(1)>>>>>>>>>TBF1              <---------ANAC58          --------->ARR11(3)         - ------->TOE1(2) >>>>>>>>>TBF1  >>>>>>>>>TBF1  <---------ANAC58          <---------ARR11(3)    ------   ccctaggaccaccgacgaagaagaagaagaagaagaagaagttcagagagcgtacatggatggatttgagaagaagatcacaggcgcaaagtcaaagtgg  16796500                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                               ------                                                                                           ----------                                                                                           <---------                                                                                          -----------                                        --------->ICU4                                    <----------            --------->MYB46(3)          <---------YAB1    <-----------TBP                 -----------  *TSS     ------------>CBF          --------->ICU4      <----------DOF2                  <---------- --------->DOF2                 <---------REM1(1) <----------DOF2                --------->MYB59<---- ----->GT1<-----------GT1    <-----------RAV1(1) <----------DOF2      ------------>CBF    -----------   tcaaaagaaaattaacaatcgagttttgaatttgttgtagtcattaatgggcctttgggcttttatatggttttcaatggagttaagtcatgtccattta  16796600           --------->MYB52(1)   --------->ANAC55(2)   <---------ANAC55(2) ---------MYB52(1) ------GAMYB ------->At5g28300 -------->GT1 ------TOE1(3) ------TOE2(3) ------>AtMYB77 ----->AGL15 ------AGL15 ------>AGL2 -------AGL1                                           <---------HSFC1(2)                   --------- ------>AGL3                                 --------->DAG2    ------->TEIL                 <-------- -------AGL2                               ---------->DOF2    <---------GLK1(2)   --------->WOX13(1) -----At5g28300                    <---------YAB1      --------->HSFC1(2)   <---------ANAC55(2) ------>AGL1                    <----------DOF2 --------->ALFIN1            --------->ANAC55(2)<-----   cggttacttaaactaatgggtctattgttttgaacttttgattttaaaaggtggagatggttctgaatctctctggttaagtatcaatccatgagacctt  16796700                                                                                       <---------AHL20(2)                             <---------AHL20(1)                                       <---------AHL20(2)                             <---------AHL20(2)                                       --------->AHL20(2)                            <---------AHL20(2)                                ------->GAMYB                            --------->AHL20(2)                                ----------->HVH21 >ARR11(3)          ----------->GT1                                          <---------MYB52(2) -ARR11(3)       ------->TEIL--------->AHL20(1)     <-----------GT1         --------->At4g35610 -----DOF2  <---------AtLEC2--------->YAB1  --------->MYB52(1)             --------->MYB52(1)   ttttttttttttttgaatgaatgtgtgaaattatattcaactaaaacaactgttttacaaatcaaattcaactaaaacaactgacaaattaaatctctct  16796800                                                                       ----------------->AG                                                                   <----------DOF2                                                                <---------ARR11(3)                                                                --------->ARR14(2)                  <                                                                <---------ARR11(1)                 <-                                                                <---------ARR14(2)                 <-               <---------AHL20(2)                               <-----------ARR10                 <--              <---------YAB1                                   ------>MYB83                      <---        <-------TEIL                                           ------>MYB46(1)                  <----     ----------->GT1                                           <---------ARR14(1)    <---------ZAT18<    --------------->AtSPL8                                     <---------CCA1(2)  <---------MYB46(3)<    <---------------AtSPL8         --------->ANAC46      --------->ZAT18      <---------ANAC58  <----  <---------ANAC46              <---------REM1(2)        <---------ZAT14      <---------ANAC58  <----   ggttaagtggtacatttttaatgtctctagtctctacacataaacgattaacatgagagttcaccaaatcttttccaattgggtttgttcacttggtttc  16796900         <---------ICU4         --------->YAB1 ------MYB46(1) --------TOE2(2) --------TOE1(2) -------MYB52(1) ----GAMYB                        ----------->GT1        ----------->GT1                      ------- -----ANAC58               ----------->GT1        ---------->DOF2                       --------->YAB1 ------MYB83          --------->AHL20(2)        ------------------------>ANAC81 --------->At4g35610<- ---------MYB46(3)    <---------AHL20(2)     ----------->GT1                    <---------At4g35610-- -----ANAC46       --------->AHL20(2)      ---------->DOF2     ---------->DOF2<------ZmHOX2a(1) ----- -----ANAC58      --------->AHL20(2)--------->AHL20(2) ---------->DOF2       *TSS       <---------ICU4   gttggttttaatcttcacaaataaaaaaatggttttaagtaaatagaaagaaaaaagaaaagaaaaaaagagtaatcgaaggagctgtaatcttcacaaa  16797000  Previous    Next  AGI:  At5g41910.1    Description:  RNA polymerase II mediator complex protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26665.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62915.1); contains domain PTHR13345:SF2 (PTHR13345:SF2); contains domain PD331788 (PD331788); contains domain PTHR13345 (PTHR13345) Range:  from: 16795283    to: 16796502    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g41920.1    Description:  scarecrow transcription factor family protein. similar to SCR (SCARECROW), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42792.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 16796977    to: 16798473    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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