Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------STY1(2)              <---------AGP1              --------->ARR14(2)                                                          ------>ZmHOX2a(1)    *TSS      <---------ARR14(2)                ---------->DOF2                <---------ANAC58  <---------YAB1   --------->STY1(2)    --------->DEAR3(1)                     --------->ANAC55(2) ------>GLK1(2) ------>ZmHOX2a(2)      --------->ANAC58  --------->DAG2        <---------ANAC58    -- ->LBD16      --------->ARR11(3)       --------->ANAC58 ---------->DOF2       <---------TOE2(3)   --- >DEAR3(1)   <---------CCA1(2)  --------->MYB52(1) ----------->GT1 <------------CBF    ---------->ID1   aattttgattactgtggatctagctagagagaagtaatggcacggacgaagaaagctaaaaagcagggagattgttaacttacgtttttgtccttctctt  16777900                                            <---------AHL20(2)                                            <---------AHL20(1)                                            --------->AHL20(2)                                            --------->AHL20(1)                                       --------->AHL20(2)                            <---------ARR11(1)                                                 <-----                            <-----------ARR10          <----------TaMYB80                      <-----               <---------ICU4          --------->AHL20(1)                                  <---------AHL20(2)              <---------YAB1--------->GLK1(2)    <---------At5g28300                       --------->AHL20(2)              --------->ICU4------->TEIL<---------AHL20(2)                                <---------ATHB12            --------->YAB1 <---------ARR14(1)   <-----------GT1             --------->TOE2(3) ------- ------->TOE1(3)  --------->AHL20(2)   <---------AHL20(1)            --------->ZAT6       --------->AHL20(2) ------>At4g35610 <---------AHL20(2)   <---------AHL20(2)          <-----------GT1      --------->WOX13(1)   agcttaaaacggtctgataattaaacttcgaatctaaacaatttaatattttacagcataatcccagtttaactgtaatctaaacaaggccaattaataa  16778000                                                --------->ARR14(2)                                            >>>>>>>>>E2Fc                                            >>>>>>>>>E2Fd                                            <------NtERF2                                           ------>NtERF2                                          --------->ANAC58                                          --------->ANAC58                                          --------->ANAC46                                         --------->LBD16                                <---------ARR11(3)                                         ------>NtERF2                       <---------MYB52(1)                                        <---------ALFIN1                    --------->LBD16    --------->ANAC58               <-----------GT1                         --------->LBD16         <-    --------->ANAC58   ---------->ID1   --------->ANAC46                   --------->ANAC46       --- ----AHL20(2)        --------->MYB59    <---------ATERF1(1)               <---------LBD16       ----- ----ICU4  <---------ICU4   <---------MYB52(1)  <---------ARR14(2)    <----------DOF2   --------->ARR11(3) -->AHL20(2)       <---------MYB52(1)  <---------LBD16         <----------DOF2         <---------GLK1(2)   atatgcaagcccataactacagtttggcccattagtttttccccgcgccaaatttgccctagttcctttcttctttcccgctatttccaaaatctcccaa  16778100                                                              ------>ZmHOX2a(1)                                                     --------->ANAC58         <---------HSFB2a(2)                      <---------MYB52(1)                         --------         --------->HSFB2a(2)                      --------->WRKY18(1)                       <-------- --------->WRKY18(1)                   <------------CBF<---------GLK1(2)      <----------DOF2<------- ---------ID1                      --------->YAB1<-----------HVH21          --------->At4g35610 ------>DAG2            --------->GLK1(2)       --------->ANAC46            <---------At4g35610<----- ----->DOF2          ------------>CBF<---------YAB1  --------->ANAC58 <-------TEIL          <--------   aaggtcaagttccagcaaaatgacacaatctttgtaatcaacattgttctccgtcaagcttctccttcaaaattcgtaagctttctgttctctaactctt  16778200                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)                                                                <---------At4g35610                                                                --------->At4g35610         <---------ARR14(2)                                    <-----------GT1         --------->ARR14(2)                               ------>ZmHOX2a(2) ------->AGL15                                          <---------ARR11(3)                      ----- ---------AGL3            <----------DOF2               --------->ARR11(3)           --------->TOE1(3) --------AGL15    --------->WOX13(1)           --------->AHL20(2)  ------>NtERF2     --------->TOE2(3) -----DOF2      ------------>CBF             --------->YAB1<----------DOF2 ----------->GT1      ----- ---------AGL2 ------->TEIL    <---------GLK1(2)--------->YAB1 <-----------RAV1(1)<-----------GT1   tttggtttcagtatatgaatcaatccgactttggaatctctacttaaaaataaaaatcgatctttttgctgcccagatagtgaataaccttaaaatcgat  16778300                                    --------->ATHB12                                   <---------YAB1                                   --------->ICU4                                 --------->YAB1                                <---------YAB1                              --------->CCA1(2)                             --------->ARR14(2)                             <---------ARR14(2)                            <------ZmHOX2a(1)                                        --------->TOE2(2)                      <---------ZAT14                                                --------->TOE1(2)       <------ZmHOX2a(1)<---------ANAC46                                       <---------ICU4      -- ------>HVH21         --------->ZAT14                                         <-------TEIL        <-- ------>TGA1         --------->ALFIN1 <---------WOX13(1)                    --------->YAB1    <------   gacgagagaggagactgaaaccagtggagaggatatgatgattgatgacccaaaacccaaaatcgaaaacgatttcaatgttcattacctccgaatttac  16778400                                                                                         <---------GLK1(1)                                                                                         --------->GLK1(1)                                                                                       <------ZmHOX2a(1)                                                          <----------DOF2             --------->ANAC58                                                          <---------DAG2       --------->ARR14(2) ------->ANAC46               --------->ARR14(2)   --------->ARR14(2)          <---------ARR14(2) -------LBD16 <----------DOF2 <---------ARR14(2)   <---------ARR14(2)     ----------->RAV1(1)       - -----GT1    <---------ICU4<---------ANAC46  --------->WOX13(1)     --------->YAB1    --------->ANAC58   tacggcaagttttaatctttatcacatttgggtatatgtctcttcataaatcaaatctgacttttttcgctcataacaacatatatgcaggaaatctatt  16778500                                    --------->ANAC58                                    --------->ANAC46 <---------ANAC58                 <---------TOE2(3)                                    --------->ANAC58 <---------ANAC58                 <---------TOE1(3)                                 --------->ZAT18   <-----------GT1 <----------DOF2  ---------->DOF2       --------->YAB1  <----------DOF2   <---------ANAC58      <----------DOF2   <----------DOF2   --------->ZAT6     <---------ANAC58   <---------ANAC58  <----------DOF2  <---------ALFIN1 ----->ZmHOX2a(1)     <---------ANAC58--------->At5g28300---------->ID1 <-----------HVH21   tccttacactgatattcacaaatggctttcttatgggcacggtacttgtttgtttacttgtctttctttctttctgtcacactctttaaaggttagaaat  16778600                                                                                                <----                                                                                               <-----                                                               <---------YAB1                  ------                                                --------->HSFC1(2) <---------ICU4      <---------GLK1(1)                                 --------->GLK1(2)--------->ARR11(3)                   --------->ARR14(2)                                 --------->ARR14(2)            --------->ICU4          --------->GLK1(1)                                 ------->TEIL   <---------HSFC1(2)------->TEIL         <---------ARR14(2)          ----------->GT1        <---------ARR14(2)   ------>ZmHOX2a(1)  <----------DOF2      -------   ggttgtgatgaattgtatatttgtctgtgtttgtgaatctgtagatgggaaacatcctggttgtgatgaatattactttggtagaagagaattctcgttt  16778700                                                                          <---------HSFC1(2)                                                            --------->At4g35610                                                         <---------At4g35610                                                         <---------ZAT2   --------->HSFC1(2)                                                         --------->At4g35610                                                         <---------HSFB2a(1)                                                         --------->HSFB2a(1)            <---------WOX13(1) -----DOF5.7(2)                                          --------->HSFC1(2)      --------->AtLEC2  <- ----ARR14(2)                   <----------DOF2          <---------HSFC1(2) <-----------GT1--------->ARR11(3) --->ARR14(2)       <---------LBD16                 <---------HSFB2a(2)   --------->HSFB2a(1)      <- -->DOF5.7(2)  <---------AHL20(2)                   --------->HSFB2a(2)   <---------HSFB2a(1)  <-----   acgcttgaaaacgatgtttatttgcggtataagtctttcaagaatgcttcacttatggaagctgctatcaaatcgaattttccatacaagattgatattg  16778800  Previous    Next  AGI:  At5g41870.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G23820.1); similar to hypothetical protein OsI_006479 [Oryza sativa (indica cultivar-group)] (GB:EAY85246.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 16775937    to: 16777804    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g41880.1    Description:  POLA3/POLA4; DNA primase. similar to unnamed protein product [Vitis vinifera] (GB:CAO65815.1); contains InterPro domain DNA primase, small subunit; (InterPro:IPR002755); contains InterPro domain DNA primase, small subunit, eukaryotic and archaeal (InterPro:IPR014052) Range:  from: 16778299    to: 16781011    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version