Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->ANAC58                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                                                         --------->LBD16                                                                                         <---------TOE1(2)                                                                                     --------->PCF2                                                                                     <---------TCP15(1)                                                                                     <---------TCP20                                                                                    <---------PCF2                 <---------AHL20(2)                                                 <-----------HVH21                 <---------AHL20(1)      --------->ATHB12                           <---------ARR14(2)              --------->AHL20(2)         <---------ICU4            --------->YAB1   --------->ARR14(2)              --------->YAB1        <---------MYB52(1)         ------>ZmHOX2a(2)  --------->LBD16              <---------AHL20(2)  ----------->GT1            <---------AGP1      <---------ANAC58         --------->AHL20(2)    ------------>MYB.PH3(1)--------->ARR11(3)         <---------ANAC58        --------->YAB1         ------------>AtMYB77   <---------GLK1(2)          <---------ANAC46   -   ----------->GT1            --------->ANAC58        <---------ARR11(3)     <----------DOF2        < -----GAMYB--------->YAB1     --------->ANAC58      --------->ICU4<---------YAB1<---------LBD16    <- --------RAV1(1) --------->AHL20(1)<-------GAMYB    ----------->ARR10<---------YAB1 --------->TCP15(1)   tgttgaagtaaaataataatatatcacttggtaagacagttactcattgctgcaaagattttggatctatgatgatgttctttgcgggtcccacgaattc  16744400                                                    <---------AHL20(1)                                                    --------->AHL20(1)                                                    <---------AHL20(2)            ------->TEIL                           --------->AHL20(2)            --------->SPL7                         --------->YAB1                                  --           <---------CCA1(2)          ------>ZmHOX2a(2)                                       ------>ZmHOX2a(2)         <---------ANAC58           <---------AGP1<---------YAB1                            <--------         <---------ANAC58           --------->ARR14(2)                                 --------->TOE1(2)        --------------->AtSPL8      <---------ARR11(3)                                 --------->TOE2(2)  <---------YAB1          <---------YAB1       <---------YAB1                    <---------ANAC58 <-- -------->YAB1   <-----------HVH21  <---------ARR14(2)      <----------DOF2      <---------ANAC58 <-- --------HAHB4<---------ANAC58  <---------ANAC58<--------HAHB4                <---------ARR11(3)  --- --------YAB1 <---------ANAC58  <---------ANAC58--------->YAB1          --------->ARR11(3)  ---------   tattattatctgcgtaccttgtcagagtacaattgctggatctacttctattattatattctctttatgttgaatatcaagatgcttaacctatgatctg  16744500                  <---------YAB1                <---------ICU4               <---------AHL20(2)        <----------ID1<---------ZAT6        --------->ANAC58                                                                      <------        --------->ANAC58                                                    <------MYB46(1)  <-------      ---------->DOF2<---------YAB1                  --------->ANAC58       <------MYB83 <---------YAB1 ------->GLK1(2)-------->ATHB1                       --------->ANAC58      --------------->AtSPL8 -ARR11(3)     --------->AHL20(2)                    --------->ANAC46      <---------------AtSPL3 -------GLK1(2)--------->ICU4                      <-----------GT1         --------------->AtSPL3 <-- -------ARR14(2)--------->ATHB51               --------->AHL20(2)          <---------------AtSPL8<--- ------>ARR14(2)--------->ATHB12              <---------YAB1             <------ZmHOX2a(1)   -------- >ARR11(3)     <---------ATHB51             <---------ZAT6      ----------->GT1     <----------DOF2   gattctgtaaaagccaaattattagtattagttttctaatttgttagtattatatacgaaacaaaaatgtgaaaaggatggtacctcttttctaattaaa  16744600         <---------TOE2(3)       <---------AHL20(2)                                                       <-----------RAV1(2)      --------->AHL20(2)                                                    <-----------HVH21      <- ---AHL20(2)                         <-----------GT1                       <------MYB83--------->ICU4 --AHL20(2)                      <---------ZAT6                            <------MYB46(1)      ----- -------ICU4                 <---------ANAC58              <----------DOF2--------->MYB59<----------- ------AHL20(2)              <---------ANAC58   <---------YAB1        <---------YAB1   <---------YAB1 ->AHL20(2)           --------->MYB52(2)      <---------At4g35610 <------------CBF--------->At4g35610   taatcgcatttaatgtgaacaagttagttttgctagtcttaacatttcttctgataagtttctttgtgaattgtgtttggtcacaggtgaagattgagtt  16744700                <---------MYB46(3)            <---------ICU4            --------->ATHB12           --------->ICU4           <---------YAB1                                   --------->DAG2         --------->YAB1                                    ---------->DOF2                   <------- ---------DOF2<---------WOX13(1)                    <-----------------------TaNAC69(2)   <----------DOF2 ---->GLK1(2)<------------CBF        --------->GLK1(2) --------->AtLEC2         --------->TOE2(3) -CBF   <---------YAB1        <---------YAB1    ---------->DOF2--------->YAB1   --------->TOE1(3)   tctttgtttgatgataattggttgaagaagttatcagagaaactgaaggaaaaagacatgaaaaagcataagtttagagaaaccttgaagtctttctttg  16744800                                                            --------->ZAT6                        XXXXXXXXXXXXXXXXXXXX>MIR395A/D/E    --------->REM1(1)                    ----------->GT1     --------------->AGL15                   --------->DAG2       <---------------AGL15                 ---------->DOF2       <-----------------AGL3             <---------YAB1            ----------------->AGL2                                <-------           --------->YAB1       ---------->DOF2        <-----------GT1                       --------       <---------YAB1   XXXXXXXXXXXXXXXXXXXX>MIR395B/C/F  ------>ZmHOX2a(1)      ----------->GT1    - ---DOF2   <---------ICU4  --------->ICU4      ----------->GT1      <---------TOE2(3)       <--------   agcctcattttgatcatgagaaaggtgaaatgcttaaaggaactaaaactggtaattttcctacactactaagtttgattcacatgtaaaatgagattct  16744900                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                        <---------ARR14(3)        ---                                                                        --------->ARR11(3)        <--                                          <---------At4g35610           --------->ARR14(3)        ---                                          --------->At4g35610           <---------ARR11(3)       <---                         --------------->AtSPL3                         --------->GLK1(2)   --------- ----ARR10               <---------------AtSPL8               ----------->GT1      <---------MYB46(3) ->GLK1(2)               --------->DAG2  ----------->HVH21   --------->DAG2        --------->ATHB12 -------->ARR11(3)      ---------->DOF2----------->RAV1(2) ---------->DOF2        <---------AtMYB61<- -GLK1(2) <-----------GT1--------------->AtSPL8            ==========================================   tagctcttggtttaactgcttacatgaaaagtactaccatcgtctgatgcagaaatagatgaaaaggtgaacaaaatcttgggaatggttgagagtggag  16745000     --------->YAB1    <---------ATHB12  --------->WOX13(1) ------>bZIP60(2) -------O2 -------TGA1a ------>O2                                                                           <---------TOE2(1) ------>ANAC58                                                                ------>NtERF2 ------>ZmHOX2a(2) ------>ANAC58                                                              --------->DEAR3(2)------- -------bZIP60(1)                                                          --------->SPL7   ========= ------>TGA1a                                                              ------->TEIL     <-------- --------STF1                   --------->At4g35610          --------->ARR14(2)      <---------TOE1(1) >ALFIN1                        <---------At4g35610          <---------ARR14(2)     --------->SPL7 ----------HVH21            <---------MYB46(3)   --------->GLK1(1)       --------->ZAT14  --------->ARR11(3) =======bZIP_DOF           --------->ALFIN1      <---------GLK1(1)       <---------ZAT14  <---------ARR11(3)   acgtcaatgaagatgagtccaatagacaagtggttgcagacttagtgaaggaattctacagcgaataccagtccctgtaccgccagtacgatgatctaac  16745100                   --------->MYB52(1)                  <---------WRKY45                  <---------WRKY12                  <---------WRKY38(1)                 --------->WRKY18(1)                <-----------HVH21              --------->DAG2                                                             --------->WRKY18(1)             --------->DAG2                                                <---------------AGL15         <------ZmHOX2a(1)                                     --------->GLK1(2)       <------MYB46(1)        <----------ID1   ---------->DOF2------>ZmHOX2a(1)     <---------GLK1(2)        <------MYB83 -->MYB52(1)---------->DOF2            <---------ALFIN1       <---------ARR14(2)      --------->MYB59 ===============HOX2a_HOX2a     ---------->DOF2               --------->ARR14(2)    <------ZmHOX2a(1) -MYB59--------->MYB59------->GAMYB<---------At4g35610    <---------LBD16  --------------->AGL15   <x   tggagagattaggaaaaaggtcaacgggaaaggagaaagctcctcttcatcaagctcagactcggattctgaccattcttctaagaggaaggtcaagaga  16745200                                                                      --------->GLK1(2)                                                      --------->MYB46(3)                                                    ----------->RAV1(1)                                                   <----------ID1     --------->ARR11(3)                                       --------->At4g35610            <---------ARR11(3)          <--                                     <-----------RAV1(2)              --------->ARR14(2)          ---                                <------MYB83     --------->ANAC58     <---------ARR14(2)  ---------->DOF2                       <---------REM1(1)         --------->ANAC58     <---------ARR11(1)----------->HVH21                      --------->ARR11(3)      ----------->HVH21--------->At4g35610     ------>ZmHOX2a(2)                  ---------->DOF2    ===========================RAV  <---------CCA1(2)<---------At4g35610          --------->DAG2        <------MYB46(1)---------->DOF2 <---------At4g35610    --------->At4g35610         ---------->DOF2      <--------P    <---------ANAC46   <---------ZAT2        --------->ARR14(2) xxxxxxxxxxxxxxxsmallRNA(i) <---------ZAT6--------->ZAT18      --------->ZAT2        <---------ARR14(2)   aatggaaatggaaaagtagagaaagatgtagagttggtaacaggtgccctgaagcaacaaatcgaagctgcaaatcttgaaattgctgatctgaaaggga  16745300  Previous    Next  AGI:  At5g41790.1    Description:  CIP1 (COP1-INTERACTIVE PROTEIN 1). similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G64330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65832.1); contains InterPro domain Prefoldin (InterPro:IPR009053) Range:  from: 16744758    to: 16750075    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version