Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------MYB52(1)                                    <----------DOF2                           --------->LBD16                                       --------->TOE2(3)                         ------>ZmHOX2a(2)                                     ------>MYB46(1)                         <---------LBD16                                       -------->P                 <------MYB83                                                  ------>MYB83                 <------MYB46(1)                                             <---------MYB59                --------->MYB59                                              <---------MYB46(2)                --------->MYB111(1)                                         <---------ANAC58                --------->MYB46(2)                                          <---------ANAC58        <----------DOF2 --------->ARR14(1)       --------->At4g35610   <----------DOF2 ----------->RAV1(2) <---------YAB1              <---------At4g35610--------->ARR11(3) --------ALFIN1 <---------AtMYB61            <---------MYB52(1)     <---------ARR11(3)    --------->ANAC46 ------------>AGL1   ----------->ARR10      <---------DEAR3(2)     <---------CCA1(2)    --------->ANAC46   caaacctggtctttgggtttggtatgatccggtactgttttgtagccggtttgcagacgatgtaatctggtatcttttgcctacctttaaacacaacatc  16700800                               --------->HSFC1(2)                               <---------HSFC1(2)                              --------->ANAC58                             --------->ATHB12                              --------->ANAC58                           <---------WOX13(1)                          --------->YAB1                       ---------->DOF2            <----------DOF2                   <---------ANAC46               ---------->DOF2      --------->ATHB12<-----------GT1                <---------ATHB12           <-------TEIL    <------ZmHOX2a(1)          <-----------GT1   gacacagagcaaaatcccatgatgtgtatcacaagcttcgatggatacattacaaaggggaggaagaaaggcaagattgattcggtttttatctttctca  16700900      <------NtERF2                                                  ---------->DOF2     --------->LBD16                                                <------ZmHOX2a(1)    <---------ANAC46                                             --------->LBD16    --------->DEAR3(1)                                   --------->AHL20(1)                       ---   <------NtERF2                                         --------->ARR11(3)                   -------   <---------LBD16                                       <---------AHL20(1)               -----------   --------->ATERF1(1)                              --------->AHL20(2)                  <---------At4g35610  ------>NtERF2                                     --------->AHL20(1)       <---------MYB46(3) <---- --------->ANAC46<---------YAB1           <---------YAB1--------->AHL20(2)   <------MYB83 ----------- <---------DEAR3(1)         ------>ZmHOX2a(1)       <---------AHL20(2)       <------MYB46(1) <------- --------->DEAR3(1)        --------->TOE2(3)        <---------AHL20(1)     <--------P   --------->At4g35610   tcgacgccggagacaaaacatgagtgattcctaaaccacttgttatctttgtaataaaatatatagccgaggaaagagttggttctatggagatgacgat  16701000                         <-------GAMYB<---------ANAC58                        --------->MYB52(2)                                                       <---                        <---------MYB46(3)                                                     ------ ------>YAB1            <-----------RAV1(1)                                                 --------- -->ATHB12              --------->MYB55(2)     --------->ANAC58                         ------>ZmHOX2a(2) >HVH21               <---------MYB52(1)       --------->ANAC58         <------ZmHOX2a(1)   --------- -----WOX13(1)<---------CCA1(2)       <---------ANAC58               <---------AtLEC2 <---------ARR11(3) >TGA1      --------->YAB1---------->ID1       --------->ANAC46  <-------GAMYB        --------->ARR11(3) --YAB1  <---------At4g35610      <----------DOF2      <-----------GT1  =======================HOX2a_HOX2a   tgataaaactcatctcataacttcgtttgttgcattctttgcttagtagacggaattttgccatctccgttgcaggacaataagacatgatctctagcaa  16701100                                                                   <---------SPL7                                                                  <---------MYB46(3)                                                                  <---------ANAC58                           <---------ICU4                         <---------ANAC58                  -                        --------->YAB1                            --------->MYB52(2)      <---------ARR11(3) ------ALFIN1           <---------ICU4               <------ZmHOX2a(1)*TSS                --------->ARR11(3) ----->RAV1(1)       --------->YAB1          ---------->DOF2     <-------TEIL<---------TOE2(3)      - >ANAC58     ------->GAMYB<---------YAB1--------->DAG2          <---------MYB52(1)    ---------->DOF2 >ANAC58  --------->MYB52(1)           ---------->DOF2     <-----------GT1  ---------->DOF2         <   cacatcgtaatccaacggagaattcatcatcatcgccagagaaaagtgaaagagaggattatttcggttcgttcggattaaagaaaaaaaaagagcttat  16701200                                            <---------WRKY45         <------------CBF                   <---------WRKY12 --------->At4g35610            <---------HSFB2a(2)           ---------->DOF2 -------->GLK1(2)               --------->HSFB2a(2)       --------->ANAC58                         <- -------->ARR14(2)       <---------MYB52(1) <---------WRKY38(1)--------->DAG2                -------- ---------ARR14(2) --------->KAN4(2)       <<<<<<<<<WRKY6 --------->ANAC58                  <--------   agtatctgaaaaattgatgactattcccttacttatagaaaaatagtcaactaatttgccaaggaaaaggaaacagcagttttaatggtcttcttctagt  16701300                                 --------->AHL20(2)     <---------GLK1(2)                    <----------DOF2                     --------->ARR11(3)                 --------->ARR11(3)       --------->YAB1<---------ARR11(3)           <---------TOE2(3)     --------->AHL20(1)   ----------->ARR10     <----------DOF2 --------AtMYB61 <---------ARR11(3)     <---------WOX13(1)               <-----------GT1   --------->ANAC58 ------->AGL15  <---------CCA1(2)<---------AHL20(2)<---------AtLEC2<---------YAB1      <---------ZAT6 ---------AGL2 ------->TEIL     --------->AHL20(2)<-------TEIL <-------GAMYB<---------DAG2 --------->ANAC58   tttggtttttgttaatgtatatcttttttgacaaaaaaattgaatgataatgtgcatagattttcggttataattttactttttatctagagtaagcaaa  16701400                                             --------->AHL20(2)                                             <---------AHL20(2)                                         <---------YAB1                 <---------AHL20(2)     --------->AHL20(2)                 --------->AHL20(2)     <---------AHL20(2)             --------->AHL20(2)        --------->AHL20(2)                      <---------YAB1           --------->TOE2(3)           --------->YAB1                  <---------At4g35610          <---------ICU4               <---------AHL20(2)      <---------AHL20(2)     >>>>>>>>>RAP2.2               <---------AHL20(2)      --------->ICU4   <---------YAB1   --------->ARR11(3)              --------->AHL20(2)      --------->AHL20(2)<---------ICU4   <---------ARR11(3)        --------->ARR11(3)     <---------ICU4    --------->ARR14(2)   <-----------ARR10         <---------ARR11(3)     --------->YAB1    <---------ARR14(2)          <-- ------->TEIL<---------AHL20(2) <----------DOF2   --------->ARR11(3) <---------GLK1(1)         ------   atgaatatctaaacattaattaaaaactgattatcttttaattaaaattaaaaatcatgaaatatttataggtatctgatcatttttgttttttgaaatt  16701500                                  <---------AHL20(2)                                  --------->AHL20(2)                              --------->AHL20(2)                             <---------YAB1                    ----------->GT1                           <---------ICU4                      <------MYB83                           --------->YAB1                      <------MYB46(1)       <---------MYB52(1)                          <---------YAB1                     <---------WOX13(1)     <-------GAMYB                       --------->AHL20(2)         --------->MYB52(1)               <---------ANAC58    ------->TEIL       <---------AHL20(2)         <-----------GT1       <---------AHL20(2) -------YAB1          <---------WOX13(1)<-----------GT1    --------->ATHB12        <---------ANAC58 --->GLK1(2)       <---------YAB1--------->AHL20(2) --------->ZAT6     --------->AHL20(2)        ----   ctgatgcacatatatcaaattttgatttattattatttaattttacaacaattaacagtatagattggtgaaattttatagtattccgttagtaaatgga  16701600                    ----------->GT1              --------->AHL20(2)                                          --------->AHL20(1)              --------->YAB1   <---------TOE1(3)                          --------->AHL20(2)           --------->YAB1      <---------TOE2(3)                         --------->AHL20(2)          <---------YAB1 --------->ICU4                                  <---------AHL20(2)  ---------->DOF2---------->DOF2                           <-----------GT1<---------AHL20(2) ------>DOF2 <---------------AGL15              --------->YAB1     --------->TOE2(3)       ----------   aaagaaaagtctataataaaaaaggaaatttttaagggaaaacatccaaataataggttttttacattttcttaaaaaaattgctactaaaatcaaagac  16701700  Previous    Next  AGI:  At5g41720.1    Description:  Identical to F-box protein At5g41720 [Arabidopsis Thaliana] (GB:Q6NLE0;GB:Q9FFQ9); similar to F-box protein-related [Arabidopsis thaliana] (TAIR:AT1G64290.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10759.1); similar to hypothetical protein OsJ_000764 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10939.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 16700393    to: 16701170    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version