Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <-----------RAV1(1)                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                     <---------PCF2                                                                                     <xxxxxxxxxxxxxxx                                                                                    ----------->HVH21                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  ------>ZmHOX2a(1)                                                                                  --------->LBD16                                                                                 --------->TOE2(2)                                                                                 --------->TOE1(2)                                                                                 <---------LBD16                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                =====================RAV                                                                                ----------->RAV1(2)                                                                               <------ZmHOX2a(2)                                                                              <---------ARR14(2)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                     ================================RAV                                                                     <-----------RAV1(2)<xxxxxxxxxxxx                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)    <                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxx ---->GAMYB                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxx -----At5g28300                                                   <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxx --->MYB52(1)                ----------->GT1      ----------->GT1 <xxxxxxxxxxxxxxxxsmallRNA(i)<------ ------GT1         ---------->DOF2        --------->At5g28300    <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxx --WOX13(1)      --------->MYB46(3)      ----------->GT1        <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxx   ccgagtcgaattggtccgaaccaaagtaaaccagtttaaaatacggtaaaattagaaaaaacatagcagagccaggtttcgatcctgggacctgtgggtt  16684700         --------->ANAC58         --------->ANAC58         --------->ANAC46         <xxxxxxxxxxxxxxxxsmallRNA(s)       <---------ALFIN1       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->MYB46(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ALFIN1   --------->MYB46(3)   <xxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->TCP16(2)  --------->TCP15(2) ------>NtERF2  --------->TCP23 <---------ATERF1(1) <---------PCF2  <xxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(s) --------->PCF5  <---------DEAR3(1) --------->PCF2 ----------->RAV1(2) <---------PCF5 <---------At4g35610 <---------TCP16(1) --------->ANAC58 <---------TCP11(2) --------->ANAC58 <---------TCP15(1)------>NtERF2 <---------TCP20--------->At4g35610 xxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxsmallRNA(si3) xxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxsmallRNA(fl3) <---------ALFIN1 xsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxsmallRNA(se3)<---------ALFIN1 -----------TCP11(1)--------->ANAC46 xxxxxxxxxxxxxxxxxsmallRNA(i2)                                 <---------AHL20(2) xxxxxxxxxxxxsmallRNA(si3)                            --------->YAB1         --------->DAG2 xxxxxxxxxxxxxxxxsmallRNA(se3)            <---------DAG2       ----------->TBP----------->GT1 -GAMYB<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <-----------TBP <-------TEIL         ---------->DOF2 xxxxxxxxxxxxxxxxsmallRNA(i2)  <----------DOF2<-----------GT1  --------->AHL20(2)    ----------->GT1 xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) *TSS   <----------DOF2--------->AHL20(2)---------->DOF2         <-   atgggcccaccacgcttccgctgcgccactctgctttgttgatacttttttcttatttataaaatataaatacatacaaaagggaaaatgtaaaagaaaa  16684800                                   <---------ARR11(3)                                   --------->ARR11(3)                          <---------ANAC58                <---------ICU4     --------->GLK1(2)               <---------YAB1 ----------->GT1             --------->YAB1  ----------->GT1             <---------ICU4 --------->ALFIN1                                                       --            --------->ICU4<---------ANAC46                              --------->LBD16            <-       ----------->GT1    <---------ANAC58                             <---------ANAC46           ---      --------->MYB59    <---------MYB46(3)                            <---------RAP2.6(2)       <--- ----------------AG     <---------ANAC46       >>>>>>>>>TBF1          <---------LBD16            <---   aatccattttggtaataatcagtgttttgggtgggaaaatctaatagaagaagaaaacgaccacgatgtgtttgcggctaaaaccatgcttattcactta  16684900                                            <---------ARR11(1)                                            <-----------ARR10                              <----------DOF2                            <------NtERF2   --------->GLK1(2)                           --------->LBD16  ------->TEIL                           ------>NtERF2    <---------ARR14(2)                           <---------RAP2.6(3)                          <---------ATERF1(2)                          <---------RAP2.6(2)                          --------->ATERF1(2)  <----------DOF2                         <---------LBD16   <---------ARR14(1)                         --------->RAP2.6(3)--------->ARR14(2)       <---------ICU4                       <-----------GT1     <---------CCA1(2)         --------->ATHB12                <---------ARR11(3)       <---------ANAC58            -------->HAHB4   --------->ZAT6  <---------AHL20(2)    <---------ANAC58           <---------YAB1 ------->ARR11(3)<---------CCA1(1)       <---------ANAC46           --------->ICU4 --------ARR11(3)<---------RVE1(1)  --------->MYB52(1)            --------->YAB1 ------>YAB1    <---------GLK1(2)  ------->GAMYB                  <---------ICU4 ------YAB1     --------->ARR11(3)--------->MYB46(3)          --------->AHL20(2) ------TOE2(3)----------->ARR10 --------->MYB52(1)            <---------AHL20(2)   agataatactataacgaagatttttttgccggcttaacgaccggcgtatcttttctactcgcatttaaaaatgattagctatatactaaaatacaatttt  16685000                          --------->ATHB12                         <---------YAB1             --------->ARR14(1)                                             <----------DOF2             --------->GLK1(2)                                             <---------ANAC58            <---------ARR11(3)                                      <---------AHL20(2)            --------->ARR11(3)                                     --------->AHL20(1)  <---------HSFB2a(2)            <---------GLK1(2)     --------->ANAC58         <---------At4g35610    <---------At4g35610            --------->ARR14(2)    --------->ANAC58     <---------ANAC46    <---------ANAC58 <------ZmHOX2a(1)            <---------ARR14(2) <----------ID1   ------------>CBF   <---------AHL20(1)  --------->HSFB2a(2)   cttctgttacaaaagattctctgttccatgatagagacgaaacatttttcaacaatggctgagatgatatatatttggcttttctgcttcgagaggaaca  16685100               <---------WOX13(1)<-------TEIL                                                <-------              <---------ANAC58  --------->CCA1(2)                                            <-------              <---------AtLEC2 --------->ARR14(2)                                  ------->GAMYB              <---------ANAC58 <---------ARR14(2)                               <-----------GT1             *TSS<---------WRKY18(1)      <-----------GT1              ----------->GT1       <------- <------ZmHOX2a(1)           ----------->ARR10 <---------MYB52(1)    ---------->DOF2         --------   agaggaagaaccatttgcttgacttcttgagaagattcagagtttctccgttctctatatgctctccatcggaaagtcaatataaccggctctcgggccc  16685200                                   <---------WRKY18(1)                                  <-----------GT1                             <---------TOE1(2)                                      --------->AHL20(2)  ---------->DOF2         -------->P                                               --------->AHL20(2) --TCP20           --------->At4g35610  ------>MYB83                             <----------DOF2 --TCP15(1)        <---------At4g35610  ------>MYB46(1)                      ---------->ID1 --PCF5         ------>ZmHOX2a(1) ----------->HVH21                    --------->ARR11(3) ->PCF2        --------->TOE2(3)  --------->WRKY38(1) --------->HSFB2a(2)------>ZmHOX2a(2) --------->ZAT6   attggaaagagcatcatcctaagctctctaccaggtttgaccaagcttatagccttggagaacatttgatttcgatcttgacgctttaaattacctctac  16685300                                                         <---------ANAC58                                                         <---------ANAC58                     --------->GLK1(2)              <---------MYB46(3)            ----------->GT1                    --------->KAN4(2)             <---------ANAC46             ---------->DOF2                   <---------KAN4(1)      <---------At4g35610                ----------->HVH21            ------>ZmHOX2a(1)        <---------At4g35610 <---------ANAC46 ------>NtERF2       <----------DOF2           <---------ATHB12 <---------ANAC58       <---------ANAC46      <---------ANAC58       <---------ZAT18      <---------ANAC58    --------->ANAC46      <---------ANAC58       --------->ZAT18--------->ICU4          --------->MYB52(1)   aagtgtttgctttcctgttgaacattctgggtgcaatcgagcggagatgatggcttgttgcttgcgaaataaacggcgcatgaaaggtaaactctcatgg  16685400                                                        <---------REM1(1)                                        <-----------RAV1(2)                                       --------->At4g35610                                       <------NtERF2    <---------YAB1                                      ----------->RAV1(1)    ----------->GT1                            <------ZmHOX2a(1)         --------->YAB1                           --------->ANAC46           <---------ICU4                   <-----------GT1                    <---------------AGL15            --------->ICU4                 ----------->GT1                   <-----------------AGL1    --------->At4g35610                  <------ZmHOX2a(1)--  ---------->DOF2 ---------->ID1    <---------ZAT18  <---------ATHB12      <----------DOF2      <----   aagtcaaagaagagagatttgtctcattcaggaaactgggcaccagaagatgacaatgatgaagggaaaatcgttttctttggaggaagtaactatacct  16685500                       --------->At4g35610                       <---------At4g35610                      ------->TEIL                    <-------TEIL                 <---------ZAT2                                        --------->ZAT2                 --------->At4g35610                             ---------->DOF2                    -                 <---------At4g35610       --------->DAG2      ------>MYB83--------->ALFIN1         <        --------->ATHB12  --------->At4g35610                  ------>MYB46(1)              --------- ------->ATHB12 --------->MYB52(2)       ---------->DOF2     --------->TOE1(2)            --------->ANAC58 ------DOF2   <---------MYB52(1)     <---------LBD16   <-----------GT1 --------->At4g35610--------->ANAC58   ttgatttggatgatttgttagctgcatctgcagaaattttggggaaaggcgctcatgttacaacctacaaagtagctgtggaagacacagccacggtagt  16685600  Previous    Next  AGI:  At5g41675.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 16684664    to: 16684735    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g41680.1    Description:  protein kinase family protein. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G64210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65842.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 16685113    to: 16686717    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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