Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                  --------->ARR11(3)                                                                                  --------->GLK1(2)                                                                                  <---------ARR11(3)                                                                                  <-----------ARR10                                                                                 --------->RVE1(1)                        --------->TOE2(3)                                        --------->CCA1(1)                        --------->TOE1(3)         --------->ANAC55(2)          --------->AHL20(2) -------TEIL            <---------DAG2       ----------->HVH21         ----------->GT1         <----- -->GT1      ------->TEIL <---------CCA1(2)--------->MYB52(2)         ----------->GT1          <----- ------>ANAC81  ----------->GT1      <---------GLK1(2)              ---------->DOF2            ------   aatacattttttatgaacttgtaaaaccttatcttgaaagattgttagtgacacttatttgatagagagaaaaagataaaaaaaaatcttcgtagactgg  16677500     --------->ARR11(3)     <---------ARR11(3)               ------>ZmHOX2a(1)                                            -- --->ZAT18                            --------->AtLEC2                                       -------- ----ZAT18                        --------->ARR14(2)                                        <-------TEIL ----ZAT14                 <---------ZAT14      --------->ZAT6                         <---------AHL20(2) --->ZAT14         <-------TEIL   <---------ARR14(2)         --------->YAB1            --------->AHL20(2)   actcgaagatgttcaaggaggtccatggctgaactgaatcctgcaaaacaacactataaacactcatatgagtccaatgtcaaacttatttatattcata  16677600                                                                                                    x                                                                                                    <                                                                                                    x                                                                                                   <X                                                                                                  ---                                                                                                  <xx                                                                                                  <xx                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  <XX                                                                                                  <--                                                                                                  <XX                                                                                                  <--                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <XXX                                                                                                 <XXX                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                 --------->ANAC58                    --------->ALFIN1           <----                                 --------->ANAC58          <---------ARR11(3)                   <xxxx                                 --------->ANAC46   --------->AHL20(2)                  --------->AHL20(2)                <---------ARR11(3)          <---------ANAC46         <---------------AtSPL8   <xxxxxx <------ZmHOX2a(2)             --------->ANAC46     <---------AHL20(2)              ----------->GT1xx ------->WOX13(1) ------>ZmHOX2a(2)         <---------ANAC58   --------->AHL20(2)  ----------->GT1--- ->YAB1         --------->ARR11(3)          <---------ANAC58--------->CCA1(2)    ---------->DOF2<xxxx   tcgatcaatgttgaacttgatcttgagttatacacacgaattcaatgcttgtatatatatagatataaaatgtggtactctgagaaagataaaaataggg  16677700     --------->ZAT14    <-----------HVH21  <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxx>smallRNA(s) XXXXXXXXXXXXXXXXXXXMIR159A ------>At4g35610 xxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxsmallRNA(se3) -------At4g35610 -------ZAT2 --------->AtLEC2 ------>HSFC1(2) ------>GLK1(1) XXXXXXXXXXXXXXXXXXMIR159C -------HSFC1(2) XXXXXXXXXXXXXXXXXXMIR159B -------GLK1(1)--------->YAB1 xxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(s2) XXXXXXXXXXXXXXXXXMIR319C XXXXXXXXXXXXXXXXXMIR319A/B xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <----------ID1 xxxxxxxxxxxxxxxxsmallRNA(se3)                                  ----------------->AGL1              < -----ZAT18  --------->ANAC58                --------->ANAC58  <---------At5g28300                  < xxxxxxxxxxxxxxxxxsmallRNA(i2)               --------->ANAC58 <-----------GT1                       < xxxxxxxxxxxxxxxxxsmallRNA(i2)            <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <------MYB83 xxxxxxxxxxxxxx>smallRNA(i)               <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <------MYB46(1) ------>ZAT2 --------->ANAC58            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <----------DOF2   < xxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------GLK1(2)   <--   agctcccttcagtccaagcatagagaagtgaagactcaatttgtctctcgcatcattcattcatttaccatatgagaacaaattctttcatttggtattt  16677800                                                       ---------->DOF2   <---------ALFIN1                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                XXXXXXXXXXXXXXXXXXXX>MIR319A/B                                                XXXXXXXXXXXXXXXXXXXX>MIR319C                                               XXXXXXXXXXXXXXXXXXXX>MIR159B------>MYB83                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                              <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->AHL20(2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <---------AHL20(2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(i)               --------->ZAT18            <---------MYB55(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->ZAT14            --------->MYB46(3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->WRKY38(1)        <---------MYB111(1) <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <---------ZAT14            --------->AtMYB61 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)             XXXXXXXXXXXXXXXXXXXX>MIR159A ------>MYB46(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->WRKY12           <---------MYB111(2)      --- xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->ALFIN1       ------>ZmHOX2a(1)            <--- xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->YAB1 xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ARR11(3) -------AtLEC2   --------->WOX13(1)       --------->ATHB12          *TSS--------->MYB46(3) --------->YAB1   ggatgaatgagtcgagagtcaattaaatctcacatattactccatgagtggaccgaagaaagctctcttcctccaccaactcaacatctataagcatatt  16677900                   --------->ANAC46                   --------->ANAC58                --------->ARR14(2)       <---------MYB52(1)               ---------->DOF2       <<<<<<<<<MYB98               <-------MYC3           <-----------TBP      <-------GAMYB--------->ANAC58 <-------MYC4         --------------->AGL15     <---------ANAC55(2)            <-------MYC2         <---------------AGL15     <---------ANAC58          --------->ANAC58         ----------------->AGL2                     --     --------->ANAC55(2)       --------->ANAC58       <-----------GT1                         -------     <---------ANAC58   <-------TEIL------->MYC3   <---------YAB1                    <------ZmHOX2a(2) --------->CBF  <---------ARR14(2)  ------->MYC2<---------YAB1                 <---------ANAC46 ----- --------GT1 <-----------TBP ---------->DOF2 --------->GLK1(2)            ----------->GT1---------->DOF2   aacaattccgttactatatatacgcatacatacaagcacatgtaaagaatttgattatactatatatagcataaaacagtgacttagatcaaaaagaaaa  16678000                                      ------>ZmHOX2a(2)        --------->ANAC58            <---------ARR11(3)        --------->ANAC58            --------->ARR11(3)      --------->CCA1(2)            --------->YAB1     <---------ARR14(2)  --------->HSFB2a(2)     --------->ARR14(2)  <---------HSFB2a(2) ---------->DOF2        <---------LBD16             --------->ZAT18                          <------- ------->CCA1(2)      --------->GLK1(2)    ------>ZmHOX2a(1)      --------->YAB1    --------->TOE1(3) --->DOF2          <---------YAB1 --------->ICU4   <---------ANAC58                --------->ZAT6 ------>GT1  --------->ICU4       <---------ATHB12 <---------ANAC58            <---------ARR11(3)   gataaaagataggccatgtttgtgattctggatgcaatgatcttcctctctgtgcgtgctagaatcaattctaatcttcaagataaccctagatgaccat  16678100          <---------SPL7        --------------->AtSPL3        <---------TOE2(3)   ----------->GT1  <---------AHL20(2)        --------->YAB1 --------->AHL20(2)     <---------AHL20(2)                         ---------->DOF2 <---------AHL20(2)    --------->AHL20(2)              ---------->DOF2 --YAB1 <---------------AtSPL8     ---------->DOF2   <------ZmHOX2a(1)    --------->CCA1(2)     -----   agattaatttgaggtaccatatggatttaatagtaaaaaaagagagtttatgtgaggaaaagagagaagaaaagagagatgagagaagaagagatgtcta  16678200                      <---------YAB1                   <----------DOF2                                           ------->TEIL                   --------------->AGL15       ---------->DOF2 --------->ANAC58            <---------ZAT18                   <---------------AGL15    --------->YAB1     --------->ANAC46            --------->ZAT18                  <---------ANAC58    ----------->GT1          --------->ANAC58          ---------->ID1         <------ZmHOX2a(1)           <---------TOE2(3)       ----------->RAV1(1)<---------AHL20(2) ----->DOF2       <---------ANAC58 ---------->DOF2  --------->LBD16 --------->ICU4     <-----------RAV1(1)   aagaaaatgaaggagttatggctttttatagcaaaaacaaaggtaaacataaaccggcaaaacccacacaatgtttatgcattttttttttgttgcacta  16678300                                            --------->AHL20(1)                                            <---------AHL20(1)                                            <---------ICU4                                            --------->ARR11(3)                                            <---------ARR11(3)                                        >>>>>>>>>GT-1                                      <-------GAMYB                                     <---------MYB46(3)                                     ----------->GT1                                     --------->MYB55(2)                                     <------MYB46(1)                                     <------MYB83                                  <---------ANAC58                         --------->AHL20(2)      --                                  <------MYB83 <-----------GT1             <---------AHL20(2)     <--                                  <---------ANAC58            <---------YAB1                      ---                                  <------MYB46(1)      <-------MYC3     <---------ARR11(3)    -------             <---------AHL20(2)  <---------MYB46(3)    ------->MYC3--------->TOE2(3)  <---------ZAT18         <---------AHL20(2)      --------->MYB55(2) <---------ALFIN1    --------->ARR11(3) --------->YAB1         --------->AHL20(2)     --------->ALFIN1 <-----------GT1 <---------YAB1 <---------AHL20(2)---   acaatttgaaattatatatatgtttactgaataagtgggtggttaatattttctccacgtttttcttattcttagattttattttttttgcacttataaa  16678400  Previous    Next  AGI:  At5g41663.1    Description:  MIR319/MIR319B; miRNA Range:  from: 16677697    to: 16677868    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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