Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               ---------->DOF2                    --------->ALFIN1 ----->ATHB12       ----------->GT1 ------ICU4       <---------ANAC46 ---->ICU4        <---------ANAC58                             <------MYB83           --------->At4g35610 -----YAB1        ----------->GT1                              <------MYB46(1)        <---------At4g35610 -->YAB1          <---------ANAC58                         <---------ARR14(2) --------->TOE2(3)<-----   gattaagttcagagagaatggggtgtaaaaaaaaagaagaatttagttcaagactatagaatatttggttctctaaactacattattcagatgggtttta  16624000                             <----------DOF2                            <---------ANAC58                            <---------ANAC58--------->LBD16                         <---------WOX13(1)--------->HSFB2a(2)                    <-------MYC2           <---------HSFB2a(2)  --------->AHL20(2)------->MYC3          <---------LBD16                       <------MYB83  <---------AHL20(2)<-------MYC3         --------->MYB52(1)                     <------MYB46(1)  <---------AHL20(1)------->MYC2      <----------DOF2                      ----------->HVH21        - ------GT1 <---------At4g35610 --------->ATHB12                 ----------->HVH21       ---------->DOF2   gcattttattttctgatgagcacatggattgcttcattggctctaccggaaaaaccattagcagggatgacatatacctgataggtgtatcaaagacttc  16624100                  <-------TEIL                                                  --------->ALFIN1                 --------->ARR14(1)                                             <---------REM1(1)                --------->ARR11(1)                                       <---------ANAC58                --------->ARR14(2)                    --------->GLK1(2)  <---------ANAC46           <                <---------ARR14(2)           <---------At4g35610    <------------CBF                -   <---------AHL20(2)                      <---------RAP2.6(2)     --------->ATHB12    <-------TEIL -   --------->AHL20(2)                      <---------ANAC46    --------->ZAT18<---------ANAC46      < -------->TOE2(3)--------->CCA1(2) ---------->DOF2   <---------GLK1(2)   <---------ANAC58  ----------   aacgtttaattaagaacagatacgacgttctcagtctgaaaggtttcggctaatagattctgaagcccacgattggcttgaggtgtaggctcgtagttaa  16624200                                                                                             --------                                                                                             --------                                                                                          --------->TOE1(2)                                                                                   =============HOX2a_HOX2a               <------------CBF                                                    ------>ZmHOX2a(1)               --------->ARR14(2)                    --------->ARR14(2)           --------->TOE2(3)  <-------TEIL <---------ARR14(2)                    ------->TEIL                 --------->TOE1(3) --------->ARR14(1)     <---------At4g35610          <---------ARR14(2)--------->ARR11(3)------>ZmHOX2a(2) ---------ARR14(2)      --------->At4g35610         <---------CCA1(2)  <---------ARR11(3)----------->GT1 -------->ARR14(2)      --------->ZAT2          <----------DOF2       <---------CCA1(2)<---------ARR11(3) -------->ARR11(1)      <---------ZAT2 <------ZmHOX2a(1)          --------->AHL20(2)   --------->ARR11(3) ---------GLK1(2)     <-----------RAV1(2)   <-----------GT1 <------------CBF   <-----------GT1  <---- ->GT1        --------->ATHB12       <---------TOE2(3)   ------------>CBF <----------DOF2============   tagattcggaagcccaagattggcccagcttagttcgtttaggatttttcctttgtatcttcaattgattatatatctttttttccttagatcgtaagaa  16624300        ----------->GT1       --------->DAG2                                         ------>ZmHOX2a(2)      ---------->DOF2                                 <------NtERF2                           <------    <------ZmHOX2a(1)                                ------>NtERF2                            <------ --------->At4g35610                         ------------>CBF ===================================HOX2a_HOX2a ->ANAC58                                   ------>MYB46(1)  --------->GLK1(1)               -------- ->ANAC58----------->GT1                    ------>MYB83    --------->ARR11(3)               <------- -----GLK1(1)                            --------->ANAC46   <---------ARR11(3)             ---------- ==========HOX2a_HOX2a     ----------->GT1  ----------->RAV1(1)     <---------ATHB12      <------ZmHOX2a(1)   atcagaggaaaaggaaaatagggttttgaaggtgaaaacaaaaacccaacaatggcgacgatgatctccaatcttccaagggatttgatagaggagattt  16624400                                                                                        <---------ZAT18                                                                                        <-------TEIL                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                             <---------DAG2                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---CCA1(1)                                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---RVE1(1)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ->ARR11(3)            ---------->DOF2                     <---------AHL20(2)<----------DOF2 --ARR11(3)          <---------YAB1           --------->DAG2       --------->DAG2       --------->ZAT18 ->ARR10    ----------->HVH21                ---------->DOF2      ---------->DOF2<xxxxxxxxxxxxxxxxxxx   tttctagggttcccttgacatctatgaaagcagtgagattaacttgcaaaagttggaacaatttatctaaaagtgagagctttacgaaggtgcacattgg  16624500                                                              --------->ICU4                                                           <---------AHL20(2)                 -------                                                          <---------AHL20(2)                  -------                                                          <---------AHL20(1)               --------->At4g35610      ----------->RAV1(1)                                 --------->AHL20(1)       <---------MYB52(1)    --------->At4g35610               ----------->HVH21   --------->AHL20(2)   ------>NtERF2  <------ xx>smallRNA(le3)          --------->YAB1           --------->YAB1            --------->DEAR3(1)  --- xxxxsmallRNA(i2)         <---------YAB1            --------->TOE2(3)  <---------YAB1      <---------At4g35610   tagagcagcaacaagagaagagaagactatgatagtcgatgtgatgcctcacaaacttaatttaatgagtattgtcatcgacgacgttactccatctgca  16624600                                                                                                   >>                                                                                                   >>                                                                                                   >>                                                                                                  <--                                                                                            ------>ZmHOX2a(1)                                                                                           --------->TOE1(2)                                                                                          ------>ZmHOX2a(2)                                                                                          ===========                                          --------->WOX13(1)                             <------ZmHOX2a(2)                                    <---------ANAC46                                     ============                                <---------MYB52(2)                                      <---------ARR14(2)   ---------->DOF2              --------->MYB46(3)                                      <---------ARR11(3) -->At4g35610                 <---------ARR11(3)                     ---------->ID1 ---------->DOF2>> -->ZAT14                   --------->ANAC58                       --------->MYB52(2)   --------->ARR14(2) ---ZAT14          <-----------GT1--------->MYB52(1)               <---------MYB46(3)   --------->ARR11(3) -------->GT1--------->ZAT14--------->ANAC58          --------->ZAT6<-------GAMYB <---------YAB1 <---   gagtttaaaggtcagtttagtttacttcacaagaactaccgtataaatcaagtcttacactatgagggtttgttgttatgcattatgaaagatcctacta  16624700                            --------->ANAC58                  --------->ARR14(2)               --------->ANAC55(2)                                                                ---              <-----------------AGL3                                                              ---      <---------ANAC46      --------->ANAC58                                                      <--   <---------TOE2(3)   <----------ID1             <---------RVE1(1)                              <--- >>>>>>>ARR2  ----------------->AGL3             <---------MYB52(1)                              ---- >>>>>>>ARR1  <-----------------AGL2          <-----------RAV1(2) ------->MYC3               <------- >>>>>>>ARR2  <-----------------AG      ------>ZmHOX2a(2)         <-------MYC3        <---------GLK1(1) ----ZmHOX2a(1)<---------ANAC55(2)     <------ZmHOX2a(2)       <---------ALFIN1       --------->GLK1(1) ====HOX2a_HOX2a  <---------ARR14(2)  <---------ARR14(2)    --------->ORA47(1)        --------->CCA1(2) ====HOX2a_HOX2a--------->LBD16       --------->ARR14(2)   --------->DEAR3(1)        xxxxxxxxxxxxxxxx >>>>>>>ARR1<---------ARR14(2)      <---------MYB46(3)   <---------At5g28300         <---------ARR14(2) ------YAB1 --------->ARR14(2)     --------->ALFIN1     <-----------GT1              --------->ARR14(2)   ggattgtggtttggaatccgtatttgggacaaacaaggtggatccaactcaggtattttcaccgtccacatggaatagaccatttcagatatgctctcgg  16624800            --------->GLK1(2)           <---------GLK1(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <------ZmHOX2a(1)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------TOE2(3)        --------->ANAC58     --------->ARR14(2)     <---------ARR14(2)   --------->LBD16 <---------LBD16 ------>CCA1(2)                                              <xxxxxxxxxxxxxxxxsmallRNA(i) ------>GLK1(1)                                            --------->ANAC46 -------GLK1(1)                                           ---------->DOF2<------ZmHOX2a(1)   -------- ------ARR14(2)                      <---------TOE1(3) <---------HSFB2a(2)                   -------- ----->ARR14(2)                      <---------TOE2(3) --------->HSFB2a(2)    <---------AHL20(2) --LBD16--------->ANAC58 --------->TOE2(3)     <---------GLK1(2)   --------->LBD16      <XXXXXXXXXXXX xxxxx>smallRNA(se3)     --------->TOE1(3)   <---------TOE2(3)  <-----------------AGL1 xxxxxxxxxxxxxx   atacgcggataaggaatcttgtagtagccttaaattcttaaggtttttagattatttctacaaagcacccgaagaggaatttttttggtatgaaatctac  16624900  Previous    Next  AGI:  At5g41510.1    Description:  F-box family protein. Identical to Putative F-box protein At5g41510 [Arabidopsis Thaliana] (GB:Q9FFS9); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G41500.1); similar to MdSFBB3-alpha [Malus x domestica] (GB:BAF47179.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 16624352    to: 16625554    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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