Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->ARR14(2)            <---------GLK1(2)       ------->TEIL    <---------MYB52(2)                                                ---------->DOF2              --    --------->ANAC58                   --------->ZAT18        --------->LBD16                 <------    --------->ANAC58              ---------->DOF2             <---------TOE1(2)          --------->ANAC46    --------->ANAC46        ------>ZmHOX2a(1)                --------->LBD16 <---------MYB46(3)   <-- -------ARR11(3)           --------->TOE2(3)                <---------LBD16 --------->ALFIN1 <-------   gataccacgaaccagtttctcccatacttccttagagaaagggcattggaagaataaatgttcccgcgtttctaaagggtgtttgcaaaacacacagctt  16623100                                                               --------->YAB1                                         <---------ALFIN1     <---------ATHB12                                        <------NtERF2         --------->MYB46(3)                                       ------>NtERF2         -------->P                        ------                                      --------->ETT(2)       ------>MYB83                     <------                                      <---------ETT(2)       ------>MYB46(1)            --------->ATERF1(1) ----->TEIL                           --------->bZIP60(1)  ------->GAMYB                <--------P ---ANAC46                          <-----------HVH21     --------->MYB46(3)     <---------ANAC58 -------CCA1(2)                  ----------->RAV1(2) --------->YAB1              <---------ANAC58   > --ZAT2             <-----------GT1<-----------RAV1(1)    <---------MYB52(2)   ------->TEIL ---------   gtatctacattcagtttccaattcaccattcgttcccctgtcgccactctatttttcataaccaaccatgagataaatgtgtaccttggggtagccccag  16623200                                            --------->ARR14(2)      <---------ATHB12            <---------TOE2(3)    ------>MYB46(1)               --------->MYB59    ------>MYB83               <----------DOF2                                                  <---- --->LBD16<----------DOF2    <---------At4g35610                                                ----- ---HSFB2a(2)                --------->At4g35610                                     <---------At4g35610 >>>>>>>>MYB2              <-----------------AG                                <---------ANAC46<----- -->RAV1(1)             ------>ZmHOX2a(1)   <---------ARR14(2)    <---------ZAT6 ------>ZmHOX2a(1)  <   aaaaccaaatcactttgtgtccattcctctcagctttaggtaagcgaatttgcgaccatgtctctctagagctaaactgtttcctgtagcagtcattttt  16623300                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                              <------       ---------->DOF2                                                                      <--------    --------->TOE2(3)                               --------->ANAC46                       <---------AtMYB61 -------GT1          --------->ARR14(2)     <----------DOF2                      --------->ARR11(3) ----->ID1           <---------ARR14(2)----------------------->TaNAC69(2)        <---------ARR11(3) ------GT1         --------->LBD16   --------->ALFIN1           ------>ZmHOX2a(1)--------->GLK1(2) ----------DOF2  <---------LBD16--------->MYB52(1)<-----------GT1                <-----------ARR10 <-   ccctttccataatgctgcatccggttctgtttccaaacggtgttgtcttttttttcgcaactcttcctcgacttggttcagaaaatctcgtcgatggtgg  16623400                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------                                                                                             <-------                                                                                            <------NtERF2                                                                                          <---------ETT(2)                                                                                          <---------bZIP60(1)                                                                                     --------->ATHB12 ------RAP2.6(2)                                                                     <---------ICU4 ---->ATERF1(1)                                                     --------->ARR14(2)    --------->bZIP60(1) -----At4g35610                                                     <---------ARR14(2)    --------->ETT(2) --NtERF2                     <----------DOF2                      <---------CCA1(2)--------->ICU4 ----MYB46(3)        <---------ZAT14                 <-----------HVH21              <---------YAB1 ---RAP2.6(2)        --------->ZAT14                --------->bZIP60(2)   ------>ZmHOX2a(1)------>NtERF2 -MYB46(3)          <----------DOF2          ---------->DOF2  <---------At4g35610 --------->YAB1 --------At4g35610  <---------DAG2      <---------LBD16 *TSS  ------>NtERF2<---------TOE1(2)<--------   ctgcttctggttctgttcatcactttacagagctttctctctagcggaatagccatgtcaatgcagcccctatctcctagtttctcatgatggcgacacg  16623500        <---------GLK1(2)   <----------DOF2 --->ANAC46 --->ANAC58 --->ANAC58 ----ANAC55(2) --->ANAC55(2) --->ANAC55(1)       <---------AHL20(2) ---LBD16   --------->TOE2(3) --ALFIN1   <---------ANAC58               ----------->GT1  --------->ANAC58              =========== -REM1(2)   <---------ANAC58 <------------CBF               --------->ANAC58              ------>ZmHOX2a(2)   gaatactttagattccttgatgtataatttgaattgaagtatgaaatgtcaaaatacagaataagcatctcggtaccattagagcatctcgatctcatct  16623600                             <---------YAB1                           <---------ICU4                           --------->YAB1                   --------->AHL20(2)--------->ANAC46                   --------->AHL20(1)--------->ANAC58       ----------->GT1    <---------ATHB12      ----------->GT1     <---------YAB1     <---------ARR11(3) <-----------GT1    <------ZmHOX2a(1)   --------->WOX13(1)  <---------AHL20(2) <---------LBD16   <---------AHL20(2)--------->ANAC58    <----------DOF2 <-----------RAV1(2)   --------->AHL20(2)   --------->AHL20(2)                 --------->ANAC55(2) ==========HOX2a_HOX2a <---------AHL20(2)  --------->AHL20(2)                  <---------ANAC55(2)   atctcaggatgttaaaacgaattaattaatcattcttccaagccatttaatttgaacagctttaaacaaataagtttagttatgtgatttgagtagttgt  16623700                                 --------->LBD16                                --------->HSFB2a(2)                                --------->ANAC46                                ---------->DOF2                             --------->ARR14(2)                               --------->ANAC46                    <---------ATHB12         --------->ICU4 --------->ZAT18   --------->ANAC58-------            <---------YAB1   <---------ARR14(2)      --------->YAB1           --------->ANAC58-------      ----------->GT1 ---------->DOF2    --------->AHL20(2) <---------ZAT18--------->ZAT18    -------   acaagagaatgtttataattcaatgaaagagtttccgaaacaatgaaatgagtaatgagaagcgaacttagtgcaagagcacgaaagagttaactcacga  16623800                                                                                                 ----       --------->ANAC58                                                                          <---       --------->ANAC58                                                                       -------   <-----------GT1                                         <------ZmHOX2a(1)        --------->ANAC58 --------->AHL20(2)      <-------TEIL                   <---------LBD16        --------->ANAC46 <---- -->ANAC58        ---------->DOF2            --------->ANAC58        <---------ANAC46--------->TOE1(2) -->ANAC46       <---------WRKY45            --------->ANAC58        ----------->GT1--------->ANAC58 -->ANAC58    --------->YAB1        <---------YAB1      <-----------RAV1(2)    <---------TOE2(3)-----   caatttaacaagacaatagtcaaagagttcataagattattttaggcaagacttaatttcaggagctagtgtggtatatttaaggcacctaagaactcat  16623900                             ---------->DOF2                    ----------->GT1 ----->ATHB12       --------->ALFIN1 ------ICU4       <---------ANAC46 -->YAB1          ----------->GT1                              <------MYB46(1)        <---------At4g35610 -----YAB1        <---------ANAC58                             <------MYB83           --------->At4g35610 ---->ICU4        <---------ANAC58                         <---------ARR14(2) --------->TOE2(3)<-----   gattaagttcagagagaatggggtgtaaaaaaaaagaagaatttagttcaagactatagaatatttggttctctaaactacattattcagatgggtttta  16624000  Previous    Next  AGI:  At5g41505.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) Range:  from: 16622719    to: 16623456    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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