Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <-----------GT1                                                                    <----------DOF2    <---------ZAT14                                                                     <---------DAG2 ------ZAT6  <---------ANAC58                 <-----------GT1                        <-----------GT1 -P --------->ZAT14     --------->ARR11(3)   --------->AHL20(2)                      <---------AHL20(2) ->GT1       <---------ANAC58    <---------HSFB2a(2)  <-----------GT1       <----------DOF2        <-   tcttagtttactatttcttatctatttatcttgttgtcgaagcctaatttactatgttacaaaactaatttggcatttctttctcatttactttattttg  16620800                                                      <---------ANAC58                    <---------MYB46(3)                                                      <---------ANAC58                    <------MYB46(1)                                                 <---------MYB46(3)                     <---------WOX13(1)                                                 <---------REM1(1)                     <---------ARR14(2)         ---------->DOF2                   <---------DAG2                              --------->ARR14(2)     --------->TOE2(3)                 <---------ATHB12                        <---------ARR14(2)    <---------ANAC55(2)              --------->WOX13(1)                        --------->ARR14(2)   -    --------->ANAC55(2)          <----------DOF2 <-----------RAV1(1)        <---------HSFB2a(2)     -    --------->ANAC46         <-----------GT1  <-----------RAV1(1)           --------->HSFB2a(2) <---- ---------DOF2            <---------GLK1(2)<----------DOF2    ------->TEIL <---------LBD16<------MYB83   gcatttacgtcaaaaggaatttggaacagaatttcctttcaatcacttttgttgttgcttcatgaatcttttcaatttctggatttgcagattggttact  16620900                                                                                        ------>MYB46(1)                                                                                        ------>MYB83                                                                                     --------->DEAR3(2)                                                                                     <------------AtMYB77                                                                                     --------->MYB46(3)                                                                                     <------------MYB.PH3(1)                                                                                   --------->ARR14(2)                                                                                   --------->MYB52(1)                                                                                   <---------ARR14(2)                                                                                --------->ANAC46                                                                               <---------TOE2(3)                                                                               <---------TOE1(3) <---      --------->TOE2(3)                                               --------->ANAC46------->GAMYB -------->ANAC58                                                 --------->ZAT14--------->ANAC55(2) -------->ANAC58                                                 <---------ZAT14<---------ANAC55(2) -----ZAT6                                             <---------ANAC55(2)    <-----------GT1--------   gtaagaaaccttggtattcaagtttgtttattgaacatagaaattagaaaacagaatacataaatactgtacaagctgtttaacgtaaccgactctaata  16621000                                                                                                 ----                                          ------------>CBF                                     ------                                     --------->YAB1                                       --------->ATHB51                                    <---------YAB1                                        --------->ATHB12                                  --------->CCA1(2)                                      --------->ICU4                                  --------->GLK1(1)                                      <---------YAB1                                 <---------ARR14(2)    --------->CCA1(2)              --------->ICU4        --------->YAB1           --------->ARR14(2)   <---------ARR11(3)            ----------->GT1 - --------GT1                   --------->LBD16        --------->ARR11(3)        <---------YAB1 <----- ->YAB1<---------ATHB12      <---------LBD16 <------------CBF                <---------ZAT6<---------   aacattctaatcaagagtaaaccacatctaaaccggatatgataaccaattgatgagatatatggaactatcacttgtagtgttgatagttattattgat  16621100                                                                          ------->GAMYB                                                                        --------->RAP2.6(3)                                                                       --------->MYB52(1)                   --------->At4g35610                                 <---------DOF5.7(2)          <------------CBF                                           ------>ZmHOX2a(1)     --------->ZAT18  <-------TEIL                                  --------->TOE1(3) -->ZmHOX2a(2)     <---------At4g35610                            <-----------------AGL1           >> --->ARR11(3)      <---------ZAT2                              <----------DOF2                  ----- --------->DOF2    --------->ZAT2<---------TOE2(3)          <-----------GT1                   ------- ----ARR11(3)    <-----------RAV1(2)         ------------>CBF  <---------DAG2               <------ZmHOX2a(1) ---CBF  --------->ATHB12        <---------TOE1(3)   <---------ZAT6 --------->TOE2(3)     <---------TOE2(3)   cttgaagcccacgattggcccagcttcattcgtttagggtttttggtatcaataagtgttatatacttttccttaacggcaagatgaaatttgaggaaaa  16621200                                        ------>ZmHOX2a(2)                                        ===================================HOX2a_HOX2a                                       <------ZmHOX2a(2)                                <------NtERF2                               ------>NtERF2                              <---------ETT(2)                             <----------DOF2                       ------------>CBF====================================HOX2a_HOX2a                      ----------->RAV1(1)                               --------->GLK1(2)                      <<<<<<<<<<<<<<<<<LFY                             <---------GLK1(2)                      ------>MYB83    --------->ARR11(3)  <-------GAMYB<---------ARR14(2) >>>>>>>>GT-3b        ------>MYB46(1) <---------ARR11(3)  <---------At4g35610 ------>GT1        --------->ANAC46  ------->GAMYB  --------->LBD16  ----------->ARR10 --->DOF2  <---------LBD16    <----------ID1        <---------LBD16 <------ZmHOX2a(1)              --   gaaaaatagggttttcggaaaacccaacaatggcgacaacgatctctaatcttccgagggagttgatagaggagattctttctagggttcccttgagagc  16621300                                                                               --------->At4g35610         --------->YAB1                                                      --------->DAG2   --------->ANAC58                                                         ---------->DOF2   --------->ANAC58                  <---------AHL20(2)             ------->TEIL    ----------->RAV1(1) ---------->DOF2        --------->DAG2       --------->DAG2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->AtLEC2        ---------->DOF2      ---------->DOF2       <-------TEIL <---------At4g35610  -   catgaaagcaatgagattaacttgcaaaagttggaacaatttatctaaaagtgagagttttatgaagatgcacattggtaaagctgcaacaagagaagag  16621400                                                           ----------->GT1                                                           <---------ANAC46                                                         ------>NtERF2                                                        --------->ANAC46                                                        <---------DEAR3(1)                --------->ALFIN1                       --------->ATERF1(1)                ----------->HVH21                     <---------ATERF1(1)              --------->LBD16                        --------->DEAR3(1)             <---------ANAC46                        ----------->HVH21         <-------GAMYB                               --------->ETT(2)        <---------MYB46(3)         <----------DOF2   <---------DEAR3(1)       <---------YAB1             <---------ANAC58  --------->ATERF1(1)                            --    --------->ICU4                <---------ANAC58  <------NtERF2                          --------->ZAT14    <---------YAB1        <---------ALFIN1        <---------ANAC46               ---------->DOF2   <- -------->ARR11(3)      <---------ALFIN1     <-------GAMYB<------NtERF2        <----------DOF2     <-   aagaccatgatggttgcggtgatgcctcacactcttgctttagtgagcgttgtcgtcgacggcgttaatccatctacagagcttaaaggtcagtttagtt  16621500                                                                                 <---------TOE2(3)                                                                             >>>>>>>>>ARR2              <----------DOF2                                      --------->ANAC58          --------->GLK1(1)                                        --------->ANAC58             <----          <---------GLK1(1)                                 <---------YAB1   >>>>>>>>>ARR1    -------      --------->ANAC58                                  ------->TEIL         >>>>>>>>>ARR2   <-------      --------->ANAC58                               <---------ANAC55(2)    <------ZmHOX2a(1)-------- ----------->HVH21                                   --------->ANAC55(2)   <---------YAB1 <---------ARR14(2) ------------->AGL15                              <---------MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(i)----- --------ANAC58                --------->MYB46(3)<-------GAMYB---------->DOF2>>>>>>>>>ARR1--------->ARR14(2) --------ANAC58 --------->AHL20(2)            <---------At4g35610  --------->ANAC46 <---------ANAC46   tccttgacaaggaattctttatatatcgagtcatccactatgagggtttgctgttatgtattttgaaagacgctactaggattgtggtttggaatccgta  16621600                                                                                            <--------                                                                                      --------->ANAC58                                                                                  ------>NtERF2                                                                                  <---------RAP2.6(3)                                                                                 ----------->HVH21                                                                                 --------->DREB2C(2)                                                                                 --------->RAP2.3(3)                                                                                 --------->DEAR3(1)                                                                                 --------->DEAR4(1)                            <---------RVE1(1)                                   --------->RAP2.3(1)                            --------->GLK1(1)                                   --------->ORA47(2)                           <---------GLK1(2)------->MYC3                      --------->ANAC58                  ------>ZmHOX2a(2)         <-------MYC3                      --------->ANAC46                 <------ZmHOX2a(2)       <---------ALFIN1                     --------->ANAC58        ---------->DOF2    --------->ARR11(3)                                --------->SPL7 <--------      --------->ANAC58     <---------ARR11(3)                               --------->CCA1(2)      --------->ANAC58     <---------ARR14(2)   <---------ANAC46           <---------ARR14(2)     <-- -----ARR14(2)  <---------ARR14(2)    --------->ORA47(1)                   --------->ARR14(2)    <--- -->LBD16 --------->DAG2   --------->ARR14(2)   <---------REM1(1)     <-------GAMYB   --------->ANAC58 --ANAC55(2)    --------->ARR14(2)   --------->DEAR3(1)              <-----------RAV1(1)  --------->ARR11(3) ->ANAC55(2) --------->ALFIN1      <---------At5g28300         <---------ARR14(2)<---------ETT(1)<--- ---->ARR14(2)<---------MYB46(3)  <-----------GT1              --------->ARR14(2)--------->At1g77200   tttggggcaagaaaggtggatccaaatcagatattctcaccgtccacatggtgtagaccatttcaaatatgctgttggatacgccgacaaggtatcttgt  16621700  Previous    Next  AGI:  At5g41500.1    Description:  F-box family protein. Identical to Putative F-box protein At5g41500 [Arabidopsis Thaliana] (GB:Q9FFT0); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G41510.1); similar to S haplotype-specific F-box protein a [Prunus dulcis] (GB:BAC65206.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 16621230    to: 16622441    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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