Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   ---------->ID1          <--------ATHB1          <---------AHL20(1)          --------->YAB1                 <---------YAB1          <---------ICU4          <---------ICU4          --------->AHL20(2)      --------->YAB1                             <---------DOF5.7(2)          <---------AHL20(2)     --------->ICU4                    --------->ANAC58                 <         <---------ATHB51      <--------HAHB4                      --------->ANAC58               <xx    ----------->GT1            --------->YAB1                  --------->ANAC58          <----------DOF2 ----YAB1--------->ICU4       --------->ICU4                   --------->ANAC58        xxxxxxxxxxxxxx -YAB1 --------->YAB1         <---------YAB1            --------->MYB59      ---------->DOF2     <xxx   cttggatagtaataattttgtagtatttggctataattatgttcttatagctactagttaggcttaagcaagcttgagttaaagtcatgttctttgtgat  16617300                      <---------YAB1               --------->ANAC46               --------->ANAC58           ------>MYB83                                                                        ------           ------>MYB46(1)  <---------TOE2(3)                                                 ------>MYB83 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                         ------- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        ------->TEIL      ------>MYB46(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <------ZmHOX2a(1)          ----------->GT1             --------- xx>smallRNA(i)--------->ANAC58    <---------TOE1(3)           --------->DAG2      <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------TOE2(3)         ---------->DOF2<-------TEIL    <--------   gaccatcgaaaccaaacacacaatttgattaagttttaaggaaaccgagtcaattgagaaataaaaaggtataaaatgtacatgaggagccaaacctaac  16617400                                                                      >>>>>>>>>ARR1                                                                      <------------CBF    <---------At4g35610                                             <---------YAB1    --------->At4g35610                 --------->YAB1<-----------GT1--------->ATHB12 -->P                     <----------DOF2 <---------ATHB12    ------------>CBF -->MYB52(1)            <---------At4g35610           --------->MYB52(1)          ------------>CBF >AtMYB61               --------->At4g35610--------->YAB1    --------->AtLEC2 --------->ANAC46 -MYB59      ------------>CBF --------------->AtSPL8<---------MYB52(2)>>>>>>>>>ARR2            ------   cagagcagctcatcaaacaatttgtctgctttcaagtactactaatcatccacaaataacgccttgcaatatgattgtataagaaacaatgttgaagacg  16617500                                                                                                <----                                                                                               <-----                                                                                               <-----                                 --------->GLK1(2)         <-------TEIL                       -------                          ------>MYB83                   <---------GLK1(2)                >>>>>>>>>WRKY6                          ------>MYB46(1)                --------->ARR14(2)             --------->WRKY12                        <---------MYB59        <------------CBF                       --------->At4g35610                       --------->ANAC46       --------->ATHB12                        <-------GAMYB                  <---------HSFB2a(2)   --------->PCF2   <---------ARR14(2)   <---------CCA1(2)------         <-----------RAV1(1)    <---------GLK1(2)      ----------->ARR10<---------DAG2<---------At4g35610 ----->GT1        --------->HSFB2a(2)   ------>NtERF2 <-----------RAV1(2)<----------DOF2--------->WRKY38(1)   ttacatttcatatgtggtttctaaaacccaactagattctgaggcccacgattggcccagattcgtttaggggaccttttctatcttcagttgactatat  16617600        <---------MYB52(1)       --------->TOE2(3)                                                        <---------ICU4      <---------------AGL15                                                     --------->YAB1      --------------->AGL15    ----------->GT1                                 <---------ATHB12     <-----------------AGL1  ---------->DOF2                               <------NtERF2 -----AHL20(2)              <------ZmHOX2a(1)                             ------>NtERF2 ----ARR11(3)            --------->At4g35610                  ----------->GT1  --------->ICU4 ----AHL20(1)       <---------GLK1(1)            ----------->GT1         <---------ETT(2)<---------ATHB12 ---->TBP        --------->ANAC58              <---------AtLEC2   ------------>CBF      ------>MYB46(1) --->AHL20(1)    --------->ANAC58--------->AHL20(2)       ---------->DOF2<----------ID1 ------>MYB83   atttgtttcccttaatcgcaagaaatcagaggaaagaaaatagggttttgcaggtaaaaaaaaagagtaacaatggcgacaatgatcaccaatcttcgaa  16617700                                                                                                 ----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                            ---------->DOF2                                    <-----                                          <---------YAB1                                       ------                                       ------>ZmHOX2a(2)                        --------->ARR11(3)                   --------->ARR11(3) <------ZmHOX2a(2)                         <---------AHL20(1)                  <---------CCA1(2)  --------->ARR11(3)                         <---------ARR11(3)                --------->AHL20(2)   --------->AGP1  <---------YAB1          --------->YAB1  --------           ==================================HOX2a_HOX2a                     --------->AHL20(2)<-----           ===================================HOX2a_HOX2a          --------->DAG2       --------->DAG2           <------ZmHOX2a(1)         <---------ARR11(3)           ---------->DOF2      ---------->DOF2   gggatttgatagaggagattatatctagggttcccttgagatctatgaaagcagtaagattaacttgcaaaagttggaataatatatccaaaagtgagat  16617800                                                                                                    -                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                                                                            <------NtERF2                                                                                            ---------  --------->ANAC46                                                                          --------- -->ZmHOX2a(2)                                                                             ------>NtERF2 --ZmHOX2a(2)                                                                              <---------RAP2.3(1) --->ARR11(3)             --------->MYB46(3)                                               <---------ATERF1(1) ----ARR14(2)           ----------->RAV1(1)                                               <---------DEAR3(1) --->AGP1<-------TEIL--------->ANAC58                      ----------->HVH21              --------->DEAR3(1) --->ARR14(3)        --------->ANAC58                <---------GLK1(1)                   --------->ATERF1(1) ----ARR14(3)       --------->DAG2                  --------->ARR11(3)        --------->TOE2(3)------ --->ARR14(2)      ---------->DOF2                <---------YAB1              <---------------AGL15-- --->ARR10      --------->YAB1                  --------->YAB1                <----------DOF2-------- ----ARR11(3) <---------WOX13(1)               <---------YAB1          --------->GLK1(2)<---------ATERF1(1)   cttcacgaagatgcagattgataaagcaacaactagagaagggaagactatgatgatatcggtgatgcctcacaatctttctttaatgagcgtcgccgtc  16617900 ----->NtERF2 ------ATERF1(1) -----ETT(2) ---->DEAR3(1) -----DEAR3(1)                  --------->ZAT2 -NtERF2 ------>ZmHOX2a(2)      <---------At4g35610 ---ATERF1(1)                   --------->At4g35610                                             <---- -----HVH21                     <---------ZAT2                     --------->DAG2         ---------->ID1 >ATERF1(1)                 <-----------HVH21                     ---------->DOF2        <-------GAMYB >RAP2.3(1)             ---------->DOF2                     --------->ZAT14             <---------MYB46(3) --->ATERF1(1)     ----------->GT1                   --------->ANAC58                   <xxxxxxxxxxxx ------->DEAR3(1)  <---------ZAT6          <----------DOF2  <---------ZAT14             --------->MYB52(2) ->DEAR3(1)    --------->LBD16<---------WRKY12       --------->ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i)   gacgacgttgatccatccgtagagtttaaaggtcagcttagttttctttgtaatcaagtcagtatacataaagttatccattgtgagggtttgttgttat  16618000                                                 --------->ANAC58                                                 --------->ANAC58                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            --------->LBD16            --------->GLK1(1)                                           <---------ANAC58            <---------GLK1(1)                                           <---------ANAC46           --------->ARR14(2)                                       <---------ARR14(2)             <---------ARR14(2)                                       --------->ARR14(2)             <---------ARR11(3)                                    --------->ANAC55(2)     --------->WRKY18(1)             ---------                                 <---------ARR14(2)       <------MYB46(1)       --------->MYB46(3)                        <---------AtMYB61  <---------ANAC58<---------PCF2       <---------MYB55(2)                      <---------MYB46(3)  <---------LBD16 ----------->GT1      <---------ALFIN1                     --------->ALFIN1--------->LBD16     <---------MYB46(3)   ------>NtERF2 ---------     ---------->DOF2<-------GAMYB--------->ARR14(2)      --------->MYB59     <---------ALFIN1 -----YAB1        <---------TOE2(3) <---------ANAC55(2) --------->ALFIN1--------->ARR14(2)  --------- xxxxxxxxxxxsmallRNA(si3)  <---------ANAC46<---------LBD16<------MYB83--------->ARR11(3)    ---------   gcttcttgaaagaccatactagggttgtggtttggaatccgtattccgggcaaacaaggtgggtcaaactcagatatccccaccctccaagtccaagcaa  16618100                                                    --------->TOE1(3)                                                    --------->TOE2(3)                                                   <---------ZAT6                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                       <-----------ARR10                                       --------->ARR14(3)                                       <---------ARR14(3)                                       <---------ARR14(2)                                       --------->GLK1(2)                                       --------->ARR11(3)                                       <---------ARR11(3)                                       --------->ARR14(2)                                      <------ZmHOX2a(1)             --------->CCA1(2)      <---------TOE2(3)             --------->GLK1(1)    ---------->DOF2  <---------ANAC58             <---------GLK1(1) =================HOX2a_HOX2a     <------MYB46(1)       <---------TOE2(1)       <---------ANAC58     <------MYB83        --------->CCA1(2)         <---------ANAC46             <-----------GT1     <---------MYB46(3) <---------ARR14(2)         ----------->GT1          --------->AHL20(2)    <---------AtMYB61   --------->ARR14(2)     <---------SPL7             <---------GLK1(2) >ANAC46    <---------ARR14(2) <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) >ANAC58    --------->ARR14(2) ================HOX2a_HOX2a              <---------TOE2(3)         >>> >AtLEC2  ----------->ARR10<---------TOE1(1)  <---------ANAC58  <---------TOE2(3)        <---------ARR14(2) >ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ANAC58  <---------TOE1(3) ----------->RAV1(2)   atgggattggttcagatatgcccttggatacgaggataaaggatcttgtcgtagcgttaaattcttaaggtttttagattatttacctgaagaaccagaa  16618200  Previous    Next  AGI:  At5g41490.1    Description:  F-box family protein. Identical to F-box protein At5g41490 [Arabidopsis Thaliana] (GB:Q9FH73); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G41510.1); similar to F-box domain-containing protein [Solanum tuberosum] (GB:ABO92991.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 16617673    to: 16618836    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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