Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <------MYB46(1)                                                                       ----------->GT1               ------->GAMYB                                           <------MYB83    --------->AHL20(2)             -------->P                                               --------->MYB111(2)             <---------At5g28300                                      --------->MYB59  <---------AHL20(1)        <-----------GT1                                               <---------AtMYB61<---------AHL20(2)     <---------YAB1                                                   --------->MYB46(2)    <---------AHL20(2)      --------------->AtSPL8                    --------->MYB111(1)  <---------AHL20(2)    <---------YAB1                             --------->ALFIN1   --------->AHL20(2)  <---------YAB1     <---------YAB1                         --------->YAB1         <---------RVE1(1) --------ARR11(3) --------->ARR14(2)                      --------->GLK1(2)       <---------ARR11(3) ------->ARR11(3) <---------ARR14(2)                  --------->YAB1  <---------MYB46(3)     <------- ------>YAB1--------->MYB52(1)    <----------DOF2  --------->TOE1(3) <---------MYB55(1)--------->AHL20(1) ------YAB1 <-----------GT1 <---------------AtSPL8 --------->TOE2(3) <--------P   --------->ARR11(3)   tgatattattttactaaccgtatatgattatttgtactttcaaaaaaaaaaaacattaacaatcttgaggggttggtaattagagatattaaattaagtt  16612800                                         <---------ANAC58            <---------At4g35610      <---------LBD16            --------->At4g35610      <---------ANAC46         ------>ZmHOX2a(2)           <---------ANAC58       <---------ARR11(3)            <---------ANAC58            ----------->GT1       --------->ARR11(3)      <---------TOE2(3)   ------>MYB46(1)         --------->ATHB12   <---------ANAC46            <---------TOE1(3)   ------>MYB83 <---------TOE1(3)                  <-   --------->ANAC55(2)        <---------DOF5.7(2)<---------MYB111(1)      <---------YAB1     <-------   <---------ANAC58      <---------TOE2(3)       <---------MYB59<---------TOE2(3)            --------   <---------ANAC58      <---------TOE1(3)<----------DOF2      --------->MYB52(1)            -------- <-----------GT1      --------->TOE2(2)  <---------ANAC58  <-----------ARR10                --------- --TOE2(3) ------>ZmHOX2a(1)  ---------->DOF2    --------->AtMYB61--------->TOE2(3)    ---------->DOF2   ttttttcgtgatcctgctcacaaacctaaggttaaagtttcgggctttcgacctactcacaaatctaacgtaaaatttgattagagagcaaaagaagctg  16612900        --------->GLK1(2)    --------->YAB1 ------>MYB83 ------>MYB46(1) --------MYB59                                                                          <----------DOF2 --At4g35610                        --------->REM1(1)                           <----------DOF2 ->ZAT2<---------GLK1(2)       <-----------GT1                                 <---------MYB52(1) ->At4g35610                  --------->AHL20(2)         --------->AHL20(2)<---------At5g28300    <-- >GLK1(2)               <-----------HVH21   --------->YAB1                <-----------GT1  <---------   accaaatcagaatttgtttatgaccatgtcaaataactacatcgaatcacaagagcaaatcaaatacaaaaaatgtttaccgttttatgtcttttactat  16613000                         --------->LBD16                        ----------->GT1                        --------->ANAC46                        --------->LBD16                       --------->HSFB2a(2)               <-----------GT1               <---------ARR11(3)               --------->ARR11(3)              --------->CCA1(1)              --------->RVE1(1)          --------->AHL20(2)       --------->ARR11(3)         <---------AHL20(2)        <---------ARR11(3)             ---------->DOF2 -------AHL20(2)       <---------HSFB2a(2)              <---------ANAC46 --GT1  --------->AHL20(2)     ---------->DOF2         <---------TOE2(3)                  ---------->DOF2   ttaaaaccaatttaaaatatcccttcccgtaaaaaaagacctcttcccatttacatttacgttgagcccaaagtctaagcccaagttataaacaaagccc  16613100                                                                                                 ----                               --------->ANAC55(2)                  --------->GLK1(2)            <---                             <-----------GT1           *TSS    ---------->DOF2                  <----       ---------->DOF2     <----------DOF2            <------------CBF <---------YAB1    --------->ICU4   ataaacaaaaaaagaagaagcgaaatgttctttacgtttttcgcctgtaagaacaaaattgcagagaaagaatttgattaccgaggtagtgaagatgagg  16613200                                                                      <---------ARR14(2)                                                           <---------ARR14(2)                                            --------->LBD16--------->ARR14(2)------>ZmHOX2a(2)   <--- ----->ZAT18     <-----------GT1            --------->HSFB2a(2)--------->At4g35610             <----- ------ZAT18<----------DOF2------>ZmHOX2a(1)<---------HSFB2a(2)<---------At4g35610      --------->ARR11(3) --ZmHOX2a(1)--------->ZAT14    --------->YAB1    --------->YAB1  <---------At4g35610   <---------ARR11(3)   acactctggaatcactttagtaccatttcctatatcaaaatttctccgagaatgagaagaatttctgcagcaaatttgatctcaaatcgaaatctttcaa  16613300                               --------->GLK1(2)                              <---------ARR11(3)                              --------->ARR11(3)                              <---------GLK1(2)                             <---------RVE1(1)                      <---------ZAT2                      --------->At4g35610                      --------->ZAT2                      <---------At4g35610                   --------->LBD16                                                       --------->ZAT2                 ------>ZmHOX2a(2)                                          --------->ALFIN1                <------ZmHOX2a(2)                                           <---------REM1(1)               --------->ARR14(2)                                         --------->At4g35610               <---------ARR11(3)                                       <-----------RAV1(2)               --------->ARR11(3)                --------->GLK1(2)   --------->GLK1(1)   <---------At4g35610               --------->ARR14(3)               <---------GLK1(2)    <---------GLK1(1)   <---------ZAT2 ------ATHB12  <---------ARR14(3) <---------ANAC46               --------->YAB1          --------->At4g35610 ------GT1     <---------ARR14(2) <-----------RAV1(1)           <---------YAB1     ---------->DOF2 <-   ccatttcttctactgaagatcccgagctcagagattttgtgggatttttagaatctctcaaaaactatgagaaatcaggtgtaccaaaaggagctggaac  16613400                   ------>ZmHOX2a(2)                         <---------ICU4                 --------->ARR14(2)                         ------>ZmHOX2a(1)            <---------ARR14(2)                              <---------YAB1            --------->ARR14(2)                             --------->TOE2(3)         <---------WOX13(1)                           <---------MYB52(1)            <---------DAG2      --------->ICU4                                 --------->LBD16                <----------DOF2      <---------YAB1                                --------->ANAC55(2)        <---------ANAC58    <---------At4g35610                             --------->ANAC46           <---------ANAC58   <---------YAB1<---------AGP1                   ------>NtERF2               <-------TEIL --------GLK1(2) <---------ARR14(2)              --------->DEAR3(1)        <---------HSFB2a(1)   <---   tgattctgatgatggattcgatctgggtcgaatgaaacgtctcatgcttcgcctccgtaatcctcattacaaatacaaggttcgtgctttttgctaattt  16613500                             --------->ARR11(3)               -------->HAHB4                             <---------ARR11(3)               <---------ICU4                         ---------->DOF2                      --------->YAB1    <---------GLK1(2)                       <<<<<<<<<MYB98                        --------->ICU4   ----------->ARR10                      --------->TOE2(3)                    --------->YAB1  <------ZmHOX2a(1)                    <---------TOE2(2)                     <---------YAB1  <---------YAB1         ----                    <---------TOE1(2)                   --------->YAB1   <---------TOE2(3)   <------- --------GT1       ------>ZmHOX2a(1) <----------DOF2   <---------YAB1   --------->YAB1 ------>ZmHOX2a(1)   caccatttctcttactgattcctatgttaaaggtctcatctttagatttggattgttttcataataatgaacaattaggatagattctcctatggattga  16613600          --------->ATHB12               <----------DOF2       <---------ZAT6                     <--         --------->ICU4          <---------ARR11(3) <---------GLK1(2)                         <------         <---------YAB1          --------->ARR11(3) <---------ARR14(2)                      --------- ------>DOF2                 ---------->DOF2        --------->ARR14(2)   <---------ARR14(2) --------- --WOX13(1)         ----------->GT1     <---------ICU4<-------TEIL  <---------YAB1         <---------YAB1   aaagacttgtaatgtttggaagttgtttattgaaaggtctaatctttagatttggattcgtttttgtgttatgcatattttgttttctggtttatgatta  16613700  Previous    Next  AGI:  At5g41470.1    Description:  similar to nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana] (TAIR:AT1G71480.1); similar to hypothetical protein OsI_013923 [Oryza sativa (indica cultivar-group)] (GB:EAY92690.1); contains domain NTF2-like (SSF54427) Range:  from: 16611181    to: 16612796    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g41480.1    Description:  GLA1 (GLOBULAR ARREST1); tetrahydrofolylpolyglutamate synthase. similar to ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT3G55630.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO69362.1); contains InterPro domain Mur ligase, central; (InterPro:IPR013221); contains InterPro domain Mur ligase, C-terminal; (InterPro:IPR004101); contains InterPro domain Folylpolyglutamate synthetase; (InterPro:IPR001645) Range:  from: 16613155    to: 16615864    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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