Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------LBD16                     ------->GAMYB                    --------->ANAC58                    --------->ANAC58                    --------->ANAC46            <------ZmHOX2a(2)                                ----                  --------->MYB52(1)           <---------ARR11(3)                                ----               --------->ANAC58                --------->ARR11(3)                                ----               --------->ANAC58   --------->KAN4(2)           <----------DOF2                  <-----              --------->WOX13(1) --------->KAN4(1)     <-----------GT1                         <-----             --------->MYB46(3)  <---------KAN4(1)   --------->YAB1                            <----- -------WOX13(1)<---------ATHB12<---------KAN4(2) --------->WOX13(1)                    <---------GLK1(1)   actgatttagagacaacaatcaacgaaactggggattattctcagacaagatcaatcttactgtctttgggaccattgaattcaacatagaattcttgca  16557000          ------>ZmHOX2a(2)          ====================================HOX2a_HOX2a      --------->WRKY12      --------->WRKY38(1)    --------------------->WRI1 ----->ANAC58 ----->ANAC46                                                                                    ---- ----->ANAC58          <---------YAB1           <---------AHL20(2)--------->YAB1            --------- ----ANAC58        <---------DAG2              --------->AHL20(2)<---------ATHB12         ---------->DOF2 ----ANAC58        <----------DOF2           --------->AHL20(2)--------->WOX13(1)       --------->YAB1 ----AtLEC2  --------->ARR14(2)        ------>ZmHOX2a(1)     <---------ATHB12          <---------ATHB12   tgccatcgttgatcgtttccactttataatcgctcatcatcctgcaatataaaatcaaatcaaatcaatcatagaaacaaaaaactcaaatcaaaagtaa  16557100                   --------->AHL20(2)           --------->ARR14(2)                   --------->AHL20(1)           <---------ARR14(2)                               <---                   <---------AHL20(2)     --------->REM1(1)                  <---------ARR11(3)<-----             ----------->GT1          --------->At4g35610                    --------->ARR11(3)<-----        ----------->RAV1(1)       <-----------GT1                       <---------ANAC46      <------      --------->DEAR3(2)         <---------YAB1<---------CCA1(2)   <---------AtLEC2         <--------      --------->MYB46(3)    ----------->GT1  --------->YAB1        <---------ANAC58        <--------- ----->MYB46(3)   --------->AHL20(2)  <---------At4g35610          <---------ANAC58   <-----------GT1 -->GT1----------->HVH21  ---------->DOF2<-------TEIL          <---------MYB52(1) <---------AHL20(2)   caaatgaaaccgacagagaaaaaaattagaaagttattacagcttcatcatatccatttctctgcgtttgcttggcgaagacattttttttctctgtcgg  16557200                                                       --------->ARR14(2)                                                       <---------GLK1(2)     <---------YAB1                                    <---------ARR14(2) ------MYB52(1)                                      --------->LBD16                               -- ----MYB46(3)                                       --------->HSFB2a(2)                            <- ----DEAR3(2)                                       <---------HSFB2a(2)----------->GT1             <- ---DREB2C(2)                                      <---------LBD16--------->At4g35610      --------->DAG2 ---HVH21                                      <<<<<<<<<TBF1      <---------At4g35610     ---------->DOF2 --RAV1(1)          <---------LBD16        ---------->ID1     --------->ALFIN1  --------->ALFIN1 ----   ttcgcttatgtttctctgattttctgggttttttttttggtttttgttcttcttccggattcgagtggagatgaagaaaaatgtgtgagagaaaaaggaa  16557300                                                                           ------->TEIL                                                                           --------->ARR14(2)                                                                           <---------ARR11(1)                                                                          <---------ARR14(1)                                                                          <---------CCA1(2)                                                                        ============================HOX2a_HOX2a                                                                        ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)                                                                       =============================HOX2a_HOX2a                                   --------->ANAC55(2)               <---------GLK1(1)                                   <---------ANAC55(2)               --------->GLK1(1)                                  --------------->AtSPL3    --------->MYB52(1)                           <---------AHL20(2)              <---------ALFIN1<---------ARR14(2)      <---------MYB52(1)  --------->AHL20(1)              *TSS     <------ZmHOX2a(1)         ------>ZmHOX2a(1)    <---------ANAC46      <---------AHL20(1)              --------->MYB46(3)         <---------AHL20(1) ------->ARR11(3)      <---------AHL20(2)                 <---------MYB55(2)         --------->AHL20(1) --------GLK1(2)       --------->AHL20(2)     --------->ATHB12--------->DEAR3(1)    --------->AHL20(2) --------ARR11(3)  <---------AHL20(2) <-------TEIL     --------->ZAT18--------->ARR11(3)     <------- ------->ARR10    <---------AHL20(2)  ------->TEIL     <---------ZAT14<---------ARR11(3)    ---------   agattttcgtttattgattttttatttatatattttcacgtacatcgatgatgggagtgaaccaccgaaggagatcgtatctctaaatatatatcctttg  16557400                                <---------AHL20(1)                                                 --                                --------->AHL20(1)                                      <---------AHL20(2)                                <---------AHL20(2)                <----------DOF2       <---------ICU4                                --------->AHL20(2)        ------------>CBF              --------->ATHB51         --------->GLK1(2)   --------->YAB1           <---------DAG2                    --------->AHL20(2)     --------->YAB1  --------->ZAT14                  <----------DOF2                  --------->ICU4 ---DOF2<---------GLK1(2) --------->YAB1             <---------ANAC58               <---------AHL20(2) >TOE2(3)<-----------ARR10----------->GT1            <---------ANAC58               --------->AHL20(2)   ttagaaataagaatctcactcccttcactagtaataaattttgtgattttgttttgctttttcaattactttctccctaaaaatttttaattattttctc  16557500                                                             <---------AHL20(2)                                                             <---------AHL20(1)                                                             --------->AHL20(2)                                                            --------->AHL20(2)                                                            <---------AHL20(2)                                                           <---------YAB1                                                        <---------YAB1                                                        --------->ICU4                                                      --------->ATHB51                                                      --------->YAB1                                                      -------->ATHB1                                                      <---------AHL20(2)                                                      <---------ICU4                                                      <--------HAHB4                                                      -------->HAHB4                                                     <---------YAB1        <------ZmHOX2a(2)                            <---------ATHB51            <-----------GT1       --------->ARR11(3)                          <---------ICU4               <---------AHL20(2)       <---------ARR11(3)             ---------->DOF2--------->ICU4       ----------->GT1     --------->MYB59         --------->AHL20(2) ----------->GT1          --------->DAG2       <------ -------->DOF2            <----------DOF2       --------->YAB1         ---------->DOF2   ----------->GT1   ccaaagttagatcatatttttgttatttcttttaaatctataaagttttatagtaattattattaaattttagaaaaggtttttaatcacatagttaaac  16557600                                                                                         <---------AHL20(1)                                                                                         --------->ARR11(3)                                                           --------->ARR11(3)            --------->AHL20(2)                                                           <---------ARR11(3)            <---------ARR11(3)                                                           <---------AHL20(1)            --------->AHL20(1)                                                           --------->AHL20(1)     <---------LBD16                                                --------->TOE2(3)            <---------CCA1(1)                                               --------->ANAC58              <---------RVE1(1)                 --------->AHL20(2)            ----------->GT1         <---------ANAC55(2)<---------AHL20(2)                 <---------AHL20(2)            --------->ANAC58        --------->ANAC46  <---------AHL20(2)                <---------YAB1                ------->TEIL<---------AHL20(2)--------->ARR11(3)              --------->YAB1         ------->TEIL     --------->AHL20(2)    <---------ARR11(3) -----GT1  --------->YAB1         <---------ATHB12    <---------AHL20(2)  ----------->ARR10   <------   tatatttatagtctaataataaatgacattgaaacaatgaatcaattgaacgtaaaataaatatttttcgaacacgtagatattttcggaatatatttta  16557700                                                                                         --------->AHL20(2)                                           <---------TOE2(3)                          --------->TOE2(3)                                     --------->ICU4                             --------->ICU4                                   --------->AHL20(2)                           <---------YAB1                                  --------->AHL20(2)                          --------->YAB1                                  <---------AHL20(2)        --------->TOE2(3)<---------YAB1    ------       ------->TEIL             --------->YAB1             ----------->GT1 --------->YAB1<---------AHL20(2) ---AHL20(2) ---------->DOF2  --------->AHL20(2)--------->ICU4      <-----------GT1 <-------TEIL   taaaacttgaatctgtaaagtatttagttcaaaaaaataatttttaagaaatttttaaaaaacgtttaatatactatttatgatgattcattaaaatcag  16557800                       <---------YAB1                              <---------ANAC58                     --------->ATHB12                              <---------ANAC58                     <---------AHL20(2)                          <-----------GT1                    <---------AHL20(2)                          <---------YAB1                    --------->AHL20(2)                        <---------ICU4         <----------DOF2                 --------->AHL20(2)                           <--------HAHB4       ------>ZmHOX2a(1)                 --------->ATHB51                             --------->ATHB51   <-------------------                <---------YAB1                               --------->ICU4     ---------->ID1                --------->ICU4        --------->AHL20(2)   --------->YAB1       <-----------GT1            --------->TOE2(3)         <---------AHL20(2)  <---------YAB1       <-----------GT1  <---- ----->GT1 --------->ANAC46--------->YAB1   <---------TOE2(3)<---------YAB1  <---------ICU4 ---------   taactatttgtatacctcattatttattagtataatctatttaactaagaatattaaactctcattattacttccctaatttttcctcttttttgtttct  16557900  Previous    Next  AGI:  At5g41340.1    Description:  UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2-21 kDa 1 (UBC4) [Arabidopsis Thaliana] (GB:P42748;GB:Q9FN66); similar to UBC5 (UBIQUITIN-CONJUGATING ENZYME 5), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G63800.1); similar to Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47726.2); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme (InterPro:IPR015581); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro: Range:  from: 16555309    to: 16557358    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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