Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              =================bZIP_DOF                                            <---------DEAR3(1)                                            <---------bZIP60(2)                                            <---------TGA1a                                            --------->TGA1a                                            <---------O2                                        <----                                            --------->O2                                        <----                                            --------->bZIP60(1)                             <--------                                            --------->bZIP60(2)                            <---------ICU4                                   ------>ZmHOX2a(2)                                       <--------ATHB1                                  --------->CCA1(2)                                        -------->HAHB4                                  <------ZmHOX2a(2)                                        --------->ATHB51                                 --------->ARR14(2)                                        --------->ATHB12                                 <---------ARR14(2)                                       --------->AHL20(2)                                --------->At4g35610                                       --------->ICU4                                <---------At4g35610                              --------->ANAC58                               ----------->ARR10             <---------ICU4 <------NtERF2 <---------ATHB12           ----------->GT1   *TSS--------->AGP1   <----------DOF2           ----------->HVH21   <----           <---------ZAT6   <-----------HVH21     <---------DAG2  --------->AHL20(2)      <---------AHL20(2)         ----------->GT1--------->TOE2(2)   <---------bZIP60(1)   <---------AHL20(2)      <---------ATHB51   >>>>>>>>>TBF1        --------->TOE1(2)----------->HVH21   --------->ATHB51    --------->ANAC58   gagaagaagaagagtgtaaacaaaaacctaggtcagatccgagacgacgtcgctttttgtccataattttaaatgggcctcacaaggcccaaataattgc  16507400                                                           ------>MYB83                                                         <---------MYB59                                                      ------>MYB46(1)                                                    <---------MYB59       --------->AHL20(2)                           --------->AtMYB61 -----ANAC58                                     <-----------GT1 --------->ARR11(3)            <----- -----ANAC46                                 <---------ZAT6------>MYB46(1)       <---------TOE2(3) ----CBF                               --------->ZAT6 ------>MYB83<------ZmHOX2a(2)          -------- -----ANAC58                   <---------GLK1(2) <<<<<<<<<GT-1   <---------ARR11(3)--------->YAB1   gtagatgtataaaatactatctgattagagctagaatttgaagactagtattaaccaaaccaaactagatcatatcaagggttaatgatatcaaattata  16507500                                    --------->ANAC58                                    --------->ANAC58                                    ----------->GT1                                  <<<<<<<ZML2                               --------->HSFC1(1)        <-----------ARR10                          -                        --------->RAP2.6(3)              ------->TEIL --------->CCA1(2)             -                       <---------DOF5.7(2)               <---------ARR11(1)            <---------ARR11(1)                    --------->TOE2(3)     --------->ARR11(3)         --------->ARR11(3)------->TEIL <                 -------->P    --------->HSFB2a(2)       --------->GLK1(2)  <---------GLK1(1)       -             <-----------GT1   <---------HSFC1(1)  <---------GLK1(1) --------->AHL20(1)--------->GLK1(2)    <-----------GT1 --------->TOE1(3)--------->TOE2(3)  <---------ARR14(1)  --------->GLK1(1)   ----- ----YAB1   <-----------GT1    <---------HSFB2a(2) --------->GLK1(1)--------->AHL20(2) <-----------ARR10 ->YAB1 <----------DOF2--------->MYB52(1) <---------ARR11(3)  --------->AtLEC2        <---------ARR14(1)   gttgtgtttcctttttatcaacccttaacggctctagaacgtaaaatctatggaaatcgaatctatgcaaatatatggaaatcgaaacgaatctatctat  16507600                                           <---------ARR11(3)                                          <---------CCA1(2)           <<<<<<<<<<AtSR1               --------->AHL20(1)          --------->ANAC55(2)            --------->ARR11(3)      <----------DOF2                    <---------ARR11(3)     <---------ICU4                      <---------AHL20(1) -------->ANAC58                    --------->AHL20(2) -------->ANAC46                    ----------->TBP ---------ALFIN1             <------ZmHOX2a(2)                                         ---------->DOF2 -------->ANAC58             <---------ATHB12            <-----------GT1            <-----------GT1 ---->AtLEC2           <-----------GT1  --------->AHL20(2)                     <----------DOF2   gcacacatctttacgcgtttttttatcaccgatcatctataaatatatctaattctttctaactatttcatagttcatcatctttttcacaaagccaaag  16507700                                                          --------->YAB1                                                         <---------ATHB12                             ----------->GT1            --------->ANAC58            <---------ICU4                           <---------ANAC58             --------->ANAC58         --------->YAB1          <----------DOF2  ----------->GT1             --------->WOX13(1)       <------ZmHOX2a(2) ---     <---------ANAC58      <---------ANAC58          ------------>CBF           =====================     <---------ANAC58<----------DOF2              <----------DOF2  --------->At4g35610         ------   tttgtcttcgtgctttctcttaactttgagcgtgaaaaaacacagagtttgtctttgcaatcaacaagaagatgactatgcgatcatcttcaccttcgtc  16507800                                                                       <----------DOF2      <---------YAB1                                           <-----------HVH21<----------DOF2 --->ZmHOX2a(1)                                           ---------->DOF2     <---------DAG2 ====HOX2a_HOX2a  <----------DOF2       <---------ANAC58--------->ANAC58  <---------ZAT18 ---->ID1  <-----------GT1              <---------ANAC58--------->ANAC58  --------->ZAT14           <   ctcttcttcttattcactcgctttcacaagtttgagcaataggcttgagaccatcttcaagaaagcttcagagctttgcactctttgtgatatcgaagcc  16507900                  --------->MYB52(1)                 ----------->HVH21           --------->ANAC55(2)           <---------ANAC55(2)                         --------->DAG2      <---------TOE2(2)          <---------LBD16<---------ARR11(3)           ---------->DOF2      <---------TOE1(2) <---------MYB52(1)      --------->ARR11(3)     ---------->DOF2            <---------TOE2(3) ----------DOF2 <-----------RAV1(2)          <------ZmHOX2a(1)         <----------DOF2   tgcgttatctattacggaccagacggagaacttaagacatggcctaaggagaaagagaaagtgagagacattgctcttaggtatagtctattgaacgaag  16508000                 --------->TOE2(3)                ----------->GT1             --------->DAG2            ---------->DOF2         --------->ANAC58         --------->ANAC58           --------->LBD16     --------->ANAC58               ------>ZmHOX2a(1)             --------->ARR14(2)     --------->ANAC46             ----------------->AGL1          <---------ARR14(2)                -     --------->ANAC58  --------->YAB1          >>>>>>>>>TBF1      --------->GLK1(2)        <---------ZAT6   cattgagacgcaagaaaagcgttaatcttcatgggttcctgaacaagaagaagaacaagggtttgaagaatccgaacaagaagatgaagacgagtcttaa  16508100                 <-----------GT1                 <---------ARR14(2)        ------>NtERF2             <---------TOE2(3)            --------->LBD16            ---------->DOF2       <-----------GT1          <---------AHL20(2)   <---------ICU4       <---------AHL20(1)      --------->YAB1       --------->ARR11(3)      <--------HAHB4                                                     ---       --------->AHL20(1)     <---------YAB1                               <---------GLK1(1)    -----       <---------ARR11(3)     --------->ICU4           <---------ZAT14------>ZmHOX2a(1)         ----- ---------->GT1  --------->ARR14(2)       <---------ETT(1) <---------ATHB12--------->GLK1(1)    -----   gaacgtgaatattttaaagtatccactcgctgatcattaccctcccgaccaagtttctccactgattcagtccttggaactccatgtctctaaattccaa  16508200                                                             --------->ZAT6          --------->ANAC46                                                  <---------YAB1              --------->YAB1                                                  --------->At4g35610         --------->ATHB12                                               =============================HOX2a_HOX2a   <---------ATHB12                                               <------ZmHOX2a(2)              -------->ATHB1                                              <---------ARR14(2)     ------>ZmHOX2a(1)--------->MYB46(3)                                              --------->ARR14(2)  ------>MYB46(1)    --------->ANAC58 ------->DOF2                                <---------ARR14(1)   ------>MYB83<--------HAHB4 ---->ANAC58                                --------->LBD16  <-----------GT1  <---------ICU4 ---->ANAC46<---------ANAC58              <---------LBD16  <-----------GT1   <---------ATHB12    ---- ---->ANAC58<---------ANAC58   --------->GLK1(2)--------->YAB1  --------->AtMYB61    --------->ANAC58   gaaaggcttcgatttcttgagtcgcagaaacagaatcagacaaaaccggatcatcagagtttaacaccatcctctctgaatcattacacccaatctttga  16508300  Previous    Next  AGI:  At5g41190.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN66411.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62795.1); contains InterPro domain D-site 20S pre-rRNA nuclease (InterPro:IPR017117); contains InterPro domain Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881) Range:  from: 16504703    to: 16507329    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g41200.1    Description:  AGL75; DNA binding / transcription factor. similar to AGL43, transcription factor [Arabidopsis thaliana] (TAIR:AT5G40220.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 16507772    to: 16508764    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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