Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <---------ANAC46                                                                                       ------>NtERF2                                                                                       --------->LBD16                                                         --------->GLK1(1)            <---------LBD16                                                     <---------HSFB2a(2)             <---------LBD16                                                     <---------ANAC46              --------->GLK1(2)                                                    <---------LBD16               <---------ARR14(2)                                <---------YAB1    <---------ARR14(2)              <---------GLK1(2)    <-----------------AGL2    --------->YAB1      --------->ARR14(2)              --------->ARR14(2) ------>At4g35610        ----------->GT1    --------->ALFIN1                    <---------YAB1 ---ARR10         <-----------GT1         <---------ANAC46                 <------ZmHOX2a(1)       -- -ARR14(2)       ----------->HVH21 ------->TEIL<---------AtMYB61         <---------TOE2(3)    <------   agcagagctatttagggatttgacaattcgtataatgaatgcttcagtggaggtttcggaaatcgaatgagcattgaggatgaagattccggcgagtgaa  16493800                                            <---------ANAC58                                            <---------ANAC46                                            <---------ANAC58                                           ------>NtERF2                                           <------NtERF2                                        <---------LBD16                                        --------->At4g35610                       --------->AGP1   --------->LBD16                       --------->ARR14(2) ------>NtERF2                   --------->DAG2                       <---------ARR14(2)<---------DEAR3(1)        <---------AtMYB61               --                   <---------At4g35610<---------LBD16            --------->LBD16                 <---                 <---------WRKY38(1)--------->GLK1(2)          <---------LBD16                  -----      --------->ARR14(2)            --------->ARR14(2)        --------->MYB52(1)              <------      <---------ARR14(2)<------ZmHOX2a(2)--------->ANAC46    <---------ARR14(2)          <---------ARR14(2) ------->GLK1(2) <---------WRKY12   <---------ARR14(2)       --------->ARR14(2)          --------->ARR14(2) ---ZAT14  <---------MYB52(1)   --------->YAB1        ---------->DOF2    ---------->DOF2 <---------GLK1(2)   gaaactggaatccgttgagtcaacagatcgacgatgagaatccgcggcgtgatgaagaaaggagaaccggaggtgtaaagcgagtaacgctgattcgccg  16493900        --------->At5g28300      <---------DEAR3(1)     <---------LBD16                                                                       <------ZmHOX2a(1)   ===============================HOX2a_HOX2a                                            --------->ALFIN1   ------>ZmHOX2a(2)                                                               <------NtERF2  ================================HOX2a_HOX2a                                      --------->ATERF1(1)  <------ZmHOX2a(2)                                                               ------>NtERF2  --------->CCA1(2)                                                               <---------MYB46(3) <---------AGP1                                                                   --------->LBD16 --------->AGP1  <-----------HVH21                                               --------->ALFIN1 <-----------ARR10                                                               <---------ANAC46 --------->ARR14(3)                                                              <---------DEAR3(1) <---------ARR14(3)                                                             <---------LBD16 <---------ARR11(3)                                                             <------NtERF2 <------ZmHOX2a(1) <---------ARR14(2)                                                             --------->ATERF1(1) --------->ARR14(2)        <------ZmHOX2a(1)                                   <---------DEAR4(2) --------->ARR11(3)  <------NtERF2                                             <---------RAP2.3(1) --------->ARR10<---------ANAC58                                              <---------RAP2.3(2) ---NtERF2      <---------ANAC58                                              <---------DEAR3(1) ---->LBD16 --------->GLK1(1)            <------ZmHOX2a(1)                   <---------At4g35610 ---LBD16   <---------GLK1(1)  --------->GLK1(2)           <---------LBD16   --------->At4g35610   gaagatctgcggtgatttccgtcggagtaggagaatcaagagaggagatgtaatggatgattctggattttagagattgagcggcgggggagaggaggag  16494000                                                                                       ------>NtERF2               <---------ANAC46                                                       --------->ANAC46            ----------->HVH21                                                  --------->YAB1        <---------ANAC58                                                   <------ZmHOX2a(1)        -        <---------ANAC46                      <---------AHL20(2)          --------->ICU4            =        <---------ANAC58         <------ZmHOX2a(1)                    <------ZmHOX2a(1)--------->LBD16    <---------GLK1(1)      <------ZmHOX2a(1) <---------AHL20(2)   --------->LBD16     --------->ANAC58   <---------ZAT6        <---------TOE2(3)   --------->AHL20(2)--------->MYB52(1)     --------->ANAC58   aagtagagttccttgcgacggagagtgaaggatgaggagagaagcgattaatttagcgagggagagaccggaggaaaggattaataatccgccattagag  16494100                         <------MYB83                         <------MYB46(1)                        <---------MYB46(3)                        <---------AtMYB61                    ------>ZmHOX2a(2)                           <---------ARR14(2)                  <---------ARR11(3)   ------>NtERF2            --------->ARR14(2)        <---------ARR11(3)           <---------At4g35610   --------->ANAC58        --------->ARR11(3)   <---------ARR11(3)            --------->ANAC58  <---------HSFB2a(2)  <---------MYB52(1)                  --------->ANAC46               <---------ZAT14  --------->HSFB2a(2)<-----------RAV1(1)                 ------>NtERF2  --------->GLK1(2) --------->ZAT14 ----->ZmHOX2a(1) --------->ARR11(3) --------->At4g35610--------->DEAR3(1)    <---------WOX13(1) ==========================HOX2a_HOX2a--------->ANAC46  <---------DEAR3(1)  --------->ATHB12       --   tcctcgagaaggtctgatatgatctgttggtgatatttcagcgccattgaagaagacgacgacgcaaatcggagaaactgattgatgaagagtgaagacg  16494200                                                        ---------->DOF2                                                   --------->AHL20(2)                 <--------ZAP1                 ----------->GT1              --------->LBD16                  <---------ANAC46             <---------LBD16                  <------NtERF2            ----------->RAV1(2)             <---------DEAR3(1)              --------->ARR14(2)      <         <----------DOF2                    --------->DEAR3(1)        <---------ARR14(2)     <-------        <---------DAG2                      <---------ANAC46          --------->ARR14(2)    ---------     <-----------GT1        <-------TEIL *TSS------>NtERF2       <-----------GT1         ------>ZmHOX2a(1) --------->GT1------>ZmHOX2a(1)        --------->MYB52(1)--------->DAG2     <---------ARR14(2)-------   atagaaaaaacctttcctgggtcaaaaacgttcaaacttcaaaacggcgtcgtttaaataaagtatttttcgaaaccggtttcgatatttcctatattaa  16494300                                                                                       <---------ZAT18                                                                ======================HOX2a_HOX2a        <-----------------AGL1                                  ------>ZmHOX2a(1)      <---------WRKY45        <-----------------AG ---------->DOF2                   --------->TOE1(3)       <---------WRKY38(1)   --------->TOE2(3) <---------At4g35610         <---------ANAC58                      <---------WRKY12 ----------DOF2<---------TOE2(3)                 <---------ANAC58                     <<<<<<<<<<WRKY11 --AHL20(2)    --------->MYB59              ------>ZmHOX2a(1)  --------->TOE2(3)      <<<<<<<<<<WRKY6 >YAB1<-----------GT1--------->At4g35610--------->ARR11(3)<---------YAB1          <---------MYB52(1) -->AHL20(2)   <---------TOE1(3)    ---------->DOF2  ---------->ID1-------->P  ------>ZmHOX2a(2)    <   ttctttcttaaccggtttaggttagctaagaaaaagaagaaaggtcctgagacttgtcttataatcctcaaccagacttgatccattagtcaactcttct  16494400                                                                                                  ---                                              <---------HSFB2a(2)                          --------->GLK1(2)                                              --------->HSFB2a(2)     -------->HAHB4      --------->ARR14(2)                                 ------------>CBF      ----------->GT1--------->YAB1      <---------GLK1(2)                             <---------ICU4--------->GLK1(2)  ----------->GT1             <---------ARR14(2)                            ------>ZmHOX2a(1) <---------HSFC1(1)     --------->ICU4     <---------TOE1(2)       ----------->GT1     --------->TOE2(3)  --------->HSFC1(1)     <---------YAB1   <---------LBD16 <<<<<<<<<<<<<<<<LFY    <-----------GT1   <---------GLK1(2) <------------CBF   ------------>CBF  <---   cttcacaatgggtaaatctctctaattttcctcatttcaatttagattctagaaatgtagtgaattgtgtaatgatcaaaacccaattcccagattctta  16494500                                                                                            ---------                                                                                            <--------                          <---------ANAC46                                                 ----------               <----------ID1                                                              <---------       ----------------->AGL1                                                        <-----------RAV1(1)       --------->YAB1     <---------ANAC58                                       ------------>CBF  <-      <---------YAB1    --------->ARR11(3)                    <------MYB83  >>>>>>>>>TBF1 <----------      ===============================================================================================      ----------------->AGL3  ---------->DOF2                 <------MYB46(1)   --------->ANAC58 <--- ------>YAB1 <---------------AtSPL8              <-----------RAV1(1) --------->At4g35610 <---------At4g35610 ------YAB1---------->DOF2<---------ANAC58<----------DOF2 <-----------RAV1(1)   --------->ANAC58 <---   tcaaagttttcataaaagggacaaaatttcttgaaagatgtgaacttttatgtgttgtttttgttggtaacagatgaagaagaagcaatgttgctgctta  16494600          <---------TOE2(3)       <---------REM1(1) >At4g35610 -At4g35610                                                            --------->ARR14(2) ----->AGL15                                                           <---------ARR14(2) ------AGL15                                                     <---------ATHB12 -----ZmHOX2a(1)                      --------->ANAC46      >>>>>>>>>>>>>>>>>LFY      --------->ANAC58 -------AGL2                        --------->ANAC46       --------->ANAC58           --------->ANAC58 ======MADS_MADS                  ------>ZmHOX2a(1)        --------->ANAC58       --------->YAB1 ------TOE2(3)              <---------ZAT6         --------->AHL20(2)  <---------GLK1(2) ------TOE1(3)        --------->ARR11(3)        ------->TEIL<<<<<<<<<<<<<<<<<LFY <---------YAB1<-----   aggaagaagatgaaggaagacgaagaactagtgttcctacacaactcatgaaactaaatagaagccaatggtggattcttgttttcataagcatcttctt  16494700  Previous    Next  AGI:  At5g41150.1    Description:  UVH1 (ULTRAVIOLET HYPERSENSITIVE 1). Identical to DNA repair endonuclease UVH1 (UVH1) [Arabidopsis Thaliana] (GB:Q9LKI5;GB:Q9SE36;GB:Q9SPL7); similar to Os03g0100400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048645.1); similar to hypothetical protein OsI_009399 [Oryza sativa (indica cultivar-group)] (GB:EAY88166.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ83103.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994); contains InterPro domain DNA repair nuclease, XPF-type/Helicase; (InterPro:IPR006166); contains InterPro domain Restriction endonuclease, type II-like, core; (InterPro:IPR0 Range:  from: 16489992    to: 16494241    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g41160.1    Description:  ATPUP12 (Arabidopsis thaliana purine permease 12); purine transmembrane transporter. Identical to Putative purine permease 12 (PUP12) [Arabidopsis Thaliana] (GB:Q9FLL4); similar to ATPUP13 (Arabidopsis thaliana purine permease 13), purine transmembrane transporter [Arabidopsis thaliana] (TAIR:AT4G08700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70463.1); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853) Range:  from: 16494588    to: 16495664    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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