Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ANAC58                                                                                         --------->ANAC58                                                                                       ---------->DOF2                        <---------HSFB2a(2)                                           --------->AtMYB61                        <---------HSFC1(1)                                          ------>MYB83                        --------->HSFB2a(2)                                         ------>MYB46(1)                       ------>ZmHOX2a(2)                                           --------->ORA47(1)                      <------ZmHOX2a(2)                                           --------->MYB46(3)                      --------->CCA1(2)                                           --------->DEAR3(1)                     <---------ARR14(3)                                           <---------MYB46(2)                     --------->ARR14(3)                                           <---------MYB111(1)                     --------->ARR11(3)                                           <---------MYB55(2)                     --------->ARR14(2)                                           --------->DEAR4(1)                     <---------ARR14(2)                                          --------->ATERF1(1)                     <---------ARR11(3)                                          --------->DEAR3(2)                     --------->AGP1                                              --------->ORA47(2)                     <---------AGP1                               ----------->GT1<------NtERF2              --------->YAB1                  --------->YAB1      <---------ANAC46--------->DREB2C(2)         --------->AHL20(2)   --------->ARR11(3)    --------->TOE2(3)           ------>NtERF2   --------->YAB1--------->YAB1 ---------->DOF2   --------->GLK1(2)       --------->TOE2(3)      <---   cagaataagaatcaaataatcaagatctagaagataaagaagacatactcataatctaaactctcgatgtgtgaaaccttggcaccgaccaaagcaagag  16402100                                                            ==============HOX2a_HOX2a                                                            ------>ZmHOX2a(2)                                                          <---------AGP1                                                          <-----------ARR10                                         ---------->DOF2  --------->ARR11(3)                                  <---------WOX13(1)      <---------ARR11(3)                                  <--------P --------->ALFIN1      ------>ZmHOX2a(1)     <---------YAB1                                --------->MYB55(2)        --------->ARR14(2)           <-----------GT1                                <---------MYB46(3)        <---------ARR14(2)       <---------YAB1      ---------->DOF2          <---------AtMYB61         <---------CCA1(2)       --------->YAB1 ---ZmHOX2a(1)                 --------->ALFIN1       <---------LBD16  <<<<<<<<<TBF1  --------->ICU4   gagttgaagaaagagttctatgtctcttaagcagtggttgattcaaagtgttgttctctggatcttctccttcttcttctccattgtaattactattact  16402200                                                 --------->ANAC46                                              ------>ZmHOX2a(2)          --------->LBD16                                              =========================HOX2a_HOX2a             >>>>>>                                           -------->HAHB4       <------ZmHOX2a(1)           >>>>>>>>>TBF1                    --------->MYB46(3)    <---------ATHB12<---------AHL20(2)      <---------YAB1        <-----------GT1                 --------->YAB1   --------->AHL20(2)    <---------AHL20(2) >>>      <---------HSFC1(2)     --------->At4g35610 --------->ANAC58  --------->AtMYB61   --------------      --------->HSFC1(2)     <---------At4g35610 --------->ANAC58  <---------ALFIN1  ---------->DOF2<   aatctgcaagtttccatcttcatccatcgatagctgtctctctaatgatccaagaaacaataaataggaccactccgaaaatttatgaaaagaagaagaa  16402300                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                       --------->AGP1                       <---------AGP1                       --------->ARR11(3)                       --------->ARR14(2)                       <---------ARR14(2)                       <---------ARR11(3)                 <---------MYB46(3)            <---------ARR11(3)            <---------GLK1(2)     ---------->DOF2  <---------CCA1(2) >>>TBF1  ----------->ARR10     --------->ARR11(3)                          <---------GLK1(2)     <-- >>>>>>TBF1 --------->ARR11(3)  <---------ARR11(3)               <---------DAG2                ------ ---------->ANAC81   ----------->ARR10                           <----------DOF2         <---------ARR14(2) ----------ID1  <---------TOE2(3)  <----------DOF2           <-----------------AGL2      --------->ARR14(2)   gaagaacaaaagtagattttggttagatcttcaagagctttctatctatctctctgttacaaaactacttttggtttggattttctctgcgaattttgtc  16402400                                   <<<<<<<<<GATA-3                                   <<<<<<<<<GATA-1                                   <---------GLK1(1)                                   <------ZmHOX2a(2)                                   <<<<<<<<<GATA-4     <---------HSFC1(1)            <<<<<<<<<GATA-2          --------->ANAC58     --------->HSFB2a(2)          <---------AGP1            --------->ANAC58     --------->HSFC1(1)           --------->ARR11(3)     <-------TEIL     <---------HSFB2a(2)   <----------DOF2       <---------YAB1               --------->AHL20(2) -------MYB52(1)        ------->TEIL------>ZmHOX2a(2)   --------->AtLEC2--------->ANAC46          --- ---->ID1       <----------DOF2   <---------ARR11(3) <-------TEIL     <-----------GT1  ----------->GT1   gttttttctagagaaacacttttatgaagctttatagatctctctctacatatgatacatgcatgcatcaatatacaccattatatgtatggtgatacaa  16402500                                                                                          -------->ATHB1                                                 --------->MYB55(2)                       --------->ATHB51                                                --------->ALFIN1                          <---------ICU4                                               *TSS                                       --------->YAB1                                              <------MYB46(1)                             --------->ATHB12                                              <---------ANAC46                            <--------ATHB1                                              <------MYB83                               <---------YAB1                                             <---------MYB46(3)                          --------->ICU4                                             --------->MYB55(2)                          <---------ATHB12            --------->AHL20(2)          <---------At5g28300                          ------------>CBF       <---------AHL20(2)             ----------->HVH21       ------->MYC3       --------->CCA1(2)       --------->AHL20(2)          <------ZmHOX2a(1) <---------MYB46(3)        --------->YAB1      --------->AHL20(2)    <---------ANAC46--------->ALFIN1  <-------MYC3  ---------->DOF2<--------- ------>YAB1<---------AHL20(2)  <------ZmHOX2a(1)<---------MYB46(3)     --------->ZAT6 --------->WOX13(1)   acataacatttaatttaaatgttatttgttgtgaggaggagtcacagtgggtggatgggtaccatatgctattctcactaaagataagacaatcattggt  16402600                     --------->AHL20(2)                    <---------AHL20(2)                --------->AHL20(2)           <---------MYB59          <---------ANAC58            <---------TOE2(3)      <------------CBF              ---------->DOF2    <---------AHL20(2)           --------->YAB1    --------->AHL20(1)       --------->TOE2(3)    <---------AHL20(1)       --------->TOE1(3)                      --------->TOE2(3) ---CBF   <---------ANAC58   <---------MYB59                        --------->TOE1(3)--------->CCA1(2)   ctatattatattgcctacttaaataatataacctaaaataaaggttgtcatcaaaaaaaaaaaaaaaaaacctaaaatgaaggcatgatatgtgtgtttg  16402700                                                                         <------MYB83                                                                         <------MYB46(1)                                                                         <---------MYB46(3)                                      ----------->GT1                <-----------RAV1(1)                                --------->YAB1                <---------GLK1(1)                 -----     <---------At4g35610     --------->WOX13(1)----------->GT1--------->GLK1(1)               -------   tgtaggcatctactattctctagctatgtttcaatctgaatagtgaatacagtatatagttttgaaatccattgttggttttgaagttagaaggaagaaa  16402800                                                                            <-----------ARR10                                                                            --------->ARR14(2)                                                                      --------->ZAT18                                                                      <---------ZAT14                                               <---------AHL20(1)   --------------->AtSPL8       <---------ANAC46                        --------->AHL20(1)   <---------------AtSPL8 <---------YAB1                           <---------YAB1           <---------ANAC58 --------->ICU4                     <---------YAB1                 <---------ANAC46 ------>GT1                       <---------AHL20(2)          <-----------RAV1(1) <----------DOF2  <- --->DOF2                    <---------AHL20(2)<---------ARR11(3)  <---------ANAC58     <----------DOF2   gttataattctgtatacaaaccctatattagtttatttattcttatcaatatttttagtccattttgttgtgtgtacaaatctactttgtctttagctat  16402900                                              --------->AHL20(1)                                              <---------AHL20(1)                                              <---------AHL20(2)                                              --------->AHL20(2)                               ------                                             --------->AHL20(2)                        ------->GAMYB<                                <---------AHL20(2)                                  --------->MYB52(1)     <----------DOF2            --------->AHL20(2)                       <---------ANAC46      <----- ------TEIL  <-----------GT1 ------->TEIL    <---------AHL20(2)         <---------TOE2(3)   ------->TEIL   atacatacttttgttttactcgtttttcatgtatattaatacccaaaataaatttgaaattagtttgtgattttgacgtagttgaacaacgacgaatttt  16403000  Previous    Next  AGI:  At5g40890.1    Description:  ATCLC-A (CHLORIDE CHANNEL A); anion channel/ voltage-gated chloride channel. Identical to Chloride channel protein CLC-a (CLC-A) [Arabidopsis Thaliana] (GB:P92941;GB:O64990;GB:Q93YS0); similar to chloride channel-like (CLC) protein, putative [Arabidopsis thaliana] (TAIR:AT5G33280.1); similar to CLC-C (chloride channel C), anion channel/ voltage-gated chloride channel [Arabidopsis thaliana] (TAIR:AT5G49890.1); similar to CLC-B (chloride channel protein B), anion channel/ voltage-gated chloride channel [Arabidopsis thaliana] (TAIR:AT3G27170.1); similar to chloride channel [Glycine max] (GB:AAY43007.1); similar to unnamed protein product [Vitis Range:  from: 16398574    to: 16402547    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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