Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->ZAT14                   <---------ARR14(2)               <---------ZAT14                   --------->ARR14(2)               <---------ZAT18                  <------ZmHOX2a(1)         <---------AHL20(2)    <---------WOX13(1)                      --------->AHL20(2)        <-------TEIL ----->DAG2     <---------TOE1(3)          --------->AHL20(2)     <---------TOE2(3)         --------- ---->DOF2      <---------TOE2(3)      --------->AHL20(2)         <---------TOE1(2)        --------->MYB46(3)   aggcagattgatactactaaggattcgatactattcagacttaaaataaatcactgaactcaatctctgaggttcactcaggcattttgtcaaacaactg  16380600           <---------MYB52(2)          --------->ANAC58          --------->ANAC55(2)                           <---------TOE2(3)         --------->TOE2(3)          --------->ANAC58                             --------->MYB52(1)   --------->ANAC46          --------->ANAC55(1)                  ------>ZmHOX2a(2)            --------->ANAC58          ----------->GT1                    <---------ARR11(3)             --------->ANAC58          --------->ANAC46                   --------->ARR11(3)   <---------ATHB12--------->TOE1(3)-- ------->TEIL       ---------->DOF2         --------->ZAT14  ------>NtERF2--------->MYB52(1)       <- >MYB52(1)<---------ANAC55(2)----------->RAV1(1)       <-----------GT1--------->CCA1(2)  --------->GLK1(2)   atgaacataaacaagtaacattgaaagaccccaacaaaatcaacagtgatctctaattaacgctgccaatggatacaaacgaaaccctaaaattctattc  16380700                                                                 <---------ARR11(3)                                                                 --------->GLK1(2)                                                       <---------LBD16                                                     ------->GAMYB                 <---------At4g35610        <---------DAG2<------NtERF2                 --------->At4g35610        <----------DOF2      --------->ARR11(3)              ---------->DOF2           <---------ATHB12 --------->LBD16                       >>>>>> ------->At4g35610             --------->ANAC46     --------->MYB46(3)                      >>>>>>>>>TBF1 --------At4g35610    ---------->DOF2 --------->WOX13(1)--------->DEAR3(1)   <<<<<<<ZML2 >>>>>>>>>TBF1   cagctaaaaaatccactaaagctgcaaagtttcactcaaacaatcacttttccaatcgccggagaaaaatctctaactagaacagagagaagaagaagaa  16380800                          --------->ANAC58                          --------->ANAC58                         ------>MYB83                         ------>MYB46(1)                                                 --------->DEAR3(1)                       --------->AtMYB61                                                 --------->MYB46(3)                      --------->MYB46(3)                                                 ----------->HVH21                      <---------MYB52(2)                                                <------NtERF2                      <---------MYB55(2)             <---------ANAC58 <---------------AGL15      ----               <----------ID1                        <---------ANAC58 <----------DOF2   <---------At4g35610             ---------->DOF2         ---------->TaMYB80     <---------GLK1(1)           --------->ATERF1(1)       <------ZmHOX2a(1)--------->MYB52(1)      <----------DOF2       <---------DAG2    --------->At4g35610 >>>TBF1  <------ZmHOX2a(1)------->GAMYB<---------YAB1      --------->GLK1(1)          <---------ATERF1(1)   gaatgtgaaggaggagaaagacaaaccaacggaagaaggaatatgagtagctttgacttgagatttcttaagctttttgaagaaataggcagcgacccaa  16380900                   <---------HSFB2a(2)                          <-----------GT1                   --------->HSFB2a(2)                     <---------TOE1(3)                  <-----------GT1                          <---------TOE2(3)              <----------DOF2                         <---------ZAT6   --------->GLK1(2)      ---------->DOF2                               <---------ANAC46  --------->ARR14(2)     --------     ------>ZmHOX2a(1)                              <---------ANAC58  <---------GLK1(2)    <--------P ------>DOF2  ------>ZmHOX2a(1)      ----------->GT1<---------ANAC58  <---------ARR14(2)<---------TOE2(3)   atagctcctaaaggtccttttctcgatactagacaatgcgagtaaaacatttttgagtgtgaaggtttaccagattctgggttttagacaaaggttagtt  16381000                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                           ----------                                                                                           <---------WRKY12                                                                                           <---------WRKY38(1)                                                                                          --------->WRKY18(1)                                                                                     --------->MYB52(1)         <---------ZAT14                  *TSS                                      <---------ARR14(2)         <---------ZAT2                  ----------->GT1                     <------ZmHOX2a(1)    ---         --------->At4g35610     --------->ANAC58                          <---------TOE2(3)     <---         <---------At4g35610     --------->ANAC58                      <------------CBF  ------------ ->MYB52(2)                     --------->ZAT18     <---------ZAT14  --------->ARR11(3)  <-----------HVH21   ttttttaagagagcagcgagagagagagagagagcgagcaacttcgtaaaatagtgaagcgagggagagaagaaattgaggagaaggaaacggtcaagcg  16381100          <---------HSFC1(2)          --------->HSFC1(2)         --------->ANAC58  --------->ANAC46  --------->ANAC55(2)  --------->ANAC58  --------->ANAC58 <---------LBD16 --------->SPL7 ------->ZAT14                                   <---------AHL20(2) --------ZAT14                             <---------AHL20(2) --------SPL7                              --------->AHL20(2)                    --------->ANAC58 >DOF2   --------->ANAC58               <----------DOF2                          --------->ANAC58 ------>ALFIN1                  <---------DAG2  --------->AHL20(2)   <---------ANAC58 ------------AtSPL3             <----------DOF2 <---------AHL20(2)   <---------ANAC58             <-- ----------->TaNAC69(2)      <-----------GT1   --------->YAB1      <-----------GT1            <------   gtgtacggaacaagcttcttactaaaccgattaactttttttcttttaattttaattttagtttttttttttcttgttaagtcacgcttaatctgtttat  16381200                                                                                              -------                                                                                         --------->AHL20(2)                                                                                 <---------ANAC58                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC55(2)                                                                                 <------MYB83 <------                                                        <---------HSFB2a(2)      <---------ANAC58                     <-----------GT1                    --------->HSFB2a(2)      <---------ANAC55(1)                   --------->AHL20(2)      --------->ANAC58                      <------MYB46(1) ---------GT1      <---------AHL20(2)      --------->ANAC58                     --------->MYB111(1) ---AHL20(2) ----------->GT1 ---------->DOF2   --------->MYB59                  --------->MYB59     <   tttcaagtcgttttagagtaattaaactttttaaagtctattgacaagttatgtagttttggaaattgaaaatgttttgaattaggtgtcataaatttaa  16381300               ----------->HVH21    ------>ZmHOX2a(1)   <---------MYB59                               <---------AHL20(2)  ----------------->AG       <---------ALFIN1 ------->TEIL -->AHL20(2)  --------->At5g28300        -------->HAHB4   <---------WOX13(1) ---AHL20(2)<---------DEAR3(1)           <---------ICU4<---------AHL20(2)  <-------GAMYB -----------GT1--------->WRKY38(1)      --------->ICU4 <---------YAB1     <-----------RAV1(1)     <--   attttcctaattagacggtgaccagaaaatcacaccttcttaattatgcatttttttttaattgatacttccttctctgttgatcaaaaaaaaaaaaaaa  16381400                                                                                                    <                                                      --------->AHL20(2)                            -                                                     <---------AHL20(2)                             <                                                   --------->YAB1                                   -                                       --------->YAB1--------->AHL20(2)                         <----            <---------YAB1          --------->HSFB2a(2)                                       -------            <---------AHL20(2)   <-----------GT1 --------->AHL20(2)                          <-------        <----------DOF2     ------>ZmHOX2a(1)----------->GT1                <---------YAB1   -------- ---------GT1      <---------ZAT18  <---------HSFB2a(2)             <---------ZAT6<---------ZAT6<----   aaaccttctcctttttaattgtgcaatttcctatttttccataagaatagaaaaaataattttggagggagtgatagtctgatagtattagataatttat  16381500  Previous    Next  AGI:  At5g40840.1    Description:  SYN2 (Sister chromatid cohesion 1 (SCC1) protein homolog 2). Identical to Sister chromatid cohesion 1 protein 2 (SYN2) [Arabidopsis Thaliana] (GB:Q9FQ20;GB:Q8W1Y1;GB:Q8W1Y2;GB:Q9FKS2); similar to ATRAD21.3/SYN4 (ARABIDOPSIS HOMOLOG OF RAD21 3) [Arabidopsis thaliana] (TAIR:AT5G16270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14595.1); contains InterPro domain Rad21/Rec8 like protein, C-terminal; (InterPro:IPR006909); contains InterPro domain Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910) Range:  from: 16376658    to: 16381042    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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