Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------YAB1                     --------->ANAC58                                   <---------AHL20(2)                  --------->ANAC58                                  --------->YAB1                       --------->ANAC46                                 <---------YAB1               --------->LBD16                            <------ZmHOX2a(1)                --------->LBD16 ------->GT1              <---------TOE2(3)              --------->ARR14(2)                         < ->SPL7                   <---------TOE1(3)              <---------ARR14(2)     <-----------RAV1(1) - --->AtSPL3        --------------->AGL15           <---------REM1(1)--------->TOE1(2)         -------   tgtaaaattgaaacacattttcaagtttaaggaagattataattttggagtcgatgtagtatcccgagagcatacgaaacatatgttgtattttcaaatt  16356700                                                                                            <--------                                                                                         <--------ATHB1                                                                                         <---------AHL20(2)                                                                                         <---------ICU4                                                                                         --------->ATHB51                            ------->TEIL                                                 --------->AHL20(2)                           <---------AtLEC2                                             --------->ICU4                       <--------ATHB1                                                   <---------YAB1                       --------->YAB1                                           --------->ANAC58                      --------->ICU4                                            --------->ANAC58 ---------RAP2.3(1)   <---------ATHB12                           <---------AHL20(2)   --------->YAB1 ----->NtERF2         <---------ATHB51 ---------->DOF2          --------->AHL20(2)   --------->ICU4 - -->ARR14(2)        --------->YAB1   <-------TEIL   <----------DOF2             --------->ANAC46    <   tgcgcctctcgatattgaactacaataatgcatgttagattcaaagcagcctcgctttggaccctataaaatgagttaatgcaagccataataatttatc  16356800                                ------>ZmHOX2a(2)                              --------->ARR11(3)         <-----------GT1<---------GLK1(2)                              --------->GLK1(2)     <------- -AHL20(2)        --------->ANAC58                                   <---------KAN4(1)    --------->ZAT14 -------->ETT(2)  --------->ANAC46                           <---------YAB1          ------->TEIL---- ---------ETT(2)  --------->ANAC58    ------>ZmHOX2a(2)<----------DOF2--------->KAN4(2)   <---------ZAT14   gatcgacatatttactaaacaagccagaatgtgatctcgatctcagcctgtgttaatctttttgtaattgaacattctggactaatgaactcttcactat  16356900                                                                   --------->AHL20(2)                                                            <------MYB46(1)                     <----                                                            <------MYB83                    <--------                                                           --------->MYB59                 --------->ARR14(2)                                                         --------->ARR14(1)                --------->ARR11(3)                                                         --------->CCA1(2)                 <---------ARR14(2)                    <------ZmHOX2a(2)                   --------->ARR11(1)               --------->LBD16                   --------->ARR11(3)                   <---------ARR14(2)              --------->HSFB2a(2)          ----------->RAV1(1)                           --------->ARR14(2)              <---------HSFB2a(2) --YAB1  --------->MYB46(3)   ---------->DOF2           <---------ARR11(3)   --------->YAB1<---------ARR11(3) ------->GT1       <---------ARR11(3)   <----------DOF2 --------->ARR11(3)  <---------ATHB12<--------   tgaaaaaaacaacaacacatagatcatttacacaaagtctccctttactaaatttcaagatttggtccatttattccaatgagaaatattccagatattt  16357000                    <----------TaMYB80                   <---------ARR14(2)               --------->SPL1(2)             <---------ZAT14             --------->ZAT14             <---------SPL7        --------->WRKY38(1)        --------->WRKY12      <-------GAMYB--------->ARR14(2)                          <---------YAB1                   <----      --------->At4g35610                                    --------->YAB1           <---------MYB46(3)      <---------At4g35610                                   <---------YAB1         --------->ALFIN1 -     <---------MYB46(3)                         <---------AHL20(2)              --------->DAG2  <---- -----AHL20(2)--------->SPL1(1)                 --------->AHL20(2)            ---------->DOF2   <---- -RVE1(1)  <---------------AtSPL3              --------->AHL20(2)        --------->GLK1(2)    <------ -CCA1(1) <------------------SPL14  <----------DOF2  --------->MYB59     <---------ARR11(3)<---------   tttttggctgttgactgtacggataggcccttaatgggcttttaatggattaaattaggcccatgatacttgaaaaatctgaaaggtgttgttgtgttgt  16357100                     *TSS                    <---------LBD16               <-----------HVH21                                                        =============               <-----------TGA1                                                         =============              --------->bZIP60(2)                                                    ================       <---------ZAT18                                                               ================       <---------ZAT14                                                               ------>ZmHOX2a(1)       --------->ZAT14--------->LBD16                                             ------>ZmHOX2a(1) -----ANAC46  --------->ANAC55(2)                  <-----------GT1    <<<<<<<<<TBF1 <---------ALFIN1- ---------->HVH21 <---------SPL7             <---------At4g35610   <<<<<<<<<TBF1  =================== -----ANAC58  <---------ANAC55(2)            --------->At4g35610<<<<<<<<<TBF1     =================== -----ANAC58  --------->bZIP60(1)            <---------ZAT2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --- ---ANAC46    <---------bZIP60(1)          <--------P     <<<<<<<<<TBF1  <<<<<<<<<TBF1  ------>ZmHOX2a(1) --RAV1(1)<-----------HVH21   <-------TEIL<---------MYB52(1) <<<<<<<<<TBF1  <<<<<<<<<TBF1   <--------   gtgtgacagtccagtcgcgtcatccggagacatccattttctctggtagctgtttacttcttcttcttcttcttcttcttcttcctcctcctctgttcgt  16357200        ------>ZmHOX2a(2)        =========================HOX2a_HOX2a       <------ZmHOX2a(2)       ==========================HOX2a_HOX2a      <---------ARR14(2)                                         --------->HSFB2a(1)      --------->ARR14(2)                                        ------->TEIL    --------->DEAR3(1)                                          <---------ARR14(2) ------->GAMYB <---------ANAC58                                 --------->ARR14(2) =============HOX2a_HOX2a                                       --------->GLK1(2) ==============HOX2a_HOX2a                                     <---------GLK1(2) =============HOX2a_HOX2a                                      <---------ARR14(1) ==============HOX2a_HOX2a             --------->HSFB2a(2)--------->ARR14(2) -------->MYB46(3)                    <-----------GT1     <---------ARR14(2) =============HOX2a_HOX2a           <-----------GT1      --------->GLK1(1) ==============HOX2a_HOX2a       --------->ARR14(2)      <---------CCA1(2)                      <---- ------>WOX13(1)          ------>ZmHOX2a(1)     <---------ALFIN1<---------ARR11(1)              <---- -MYB52(1)     <---------ANAC58  <---------ARR14(2)      <---------GLK1(1)                  <--------   caatcgccgatctcgttgcttcattttcctgtgagtattttctcgattcgacacatctcatatccgaatctgccatttcttcattcaattttgtttattt  16357300                                                                            --------->HSFC1(2)             <---------------AGL15                                          <---------HSFC1(2)             --------------->AGL15                                         --------->GLK1(2)            ----------------->AGL3                                         --------->ARR11(3)            ------>ZmHOX2a(2)                                              <---------ARR14(2)           <------ZmHOX2a(2)                                               <---------ARR11(3)          <---------AGP1                             <---------ANAC58      --------->ARR14(2)          --------->ARR14(2)                         <---------ANAC58      <-----------ARR10         <---------CCA1(2)                          <---------LBD16       <---------GLK1(2)      <---------LBD16                  <---------ANAC58   --------->ARR14(2)<---------HSFB2a(1) -------RAV1(1)                        <---------ANAC58   <---------ARR14(2)--------->HSFB2a(1) -----MYB46(3)         --------->GLK1(2)     <---------ICU4  --------->ANAC55(2) -AHL20(2)<---------ARR14(2)      --------->HSFB2a(2)<---------ANAC46<---------ANAC46               <   gttggaacttcggatctatatagagaatcgagttttctagggcttactcattgtttcgggtatatgtaatggctgagaatcttctctgtttgtatcagtg  16357400                                                  --------->HSFB2a(1)                                                  <---------ZAT2                                                  --------->At4g35610                                                  <---------At4g35610                     <----------DOF2                                                  <------NtERF2                           <---------DAG2                                     <------ZmHOX2a(1)                                  <---------At4g35610                                  <------ZmHOX2a(1)<---------GLK1(2)               ==================bZIP_DOF                              <------MYB46(1)     <---------HSFB2a(1)              <---------TGA1a              <---------ZAT6  <------MYB83        <---------HSFC1(2)               ==================bZIP_DOF      <------MYB83           --------->MYB111(2)  --------->HSFC1(2)               <---------ANAC58      <------MYB46(1)       <--------P         <---------MYB52(1)             <---------ATHB12    <---------WOX13(1)    --------->ATHB12    --------->LBD16    <---------HSFC1(2)<---------ANAC58  --------->ATHB12        <---------MYB46(3) --------->ANAC46    --------->HSFC1(2)--------->TGA1a <- ------ZmHOX2a(2)        <---------ATHB12   <---------LBD16  ----------->GT1--------->WOX13(1)<------   agatcgattggtacaagtgttcatccaatggttggaggaggagttatccggcagcttcttagaaggaaacttcattcccaatcagtcgtgagctttttcc  16357500                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                 <---------AGP1                                 --------->ARR14(2)                                 <---------ARR11(3)                                 <---------ARR14(2)                                 --------->GLK1(2)                                 --------->ARR11(3)                                <------ZmHOX2a(1)                           <---------ANAC58                           <---------ANAC58                          <---------At4g35610                                       --------->ATHB12       <----------DOF2<---------REM1(1)                                       <---------ALFIN1   --------->REM1(1)<---------At4g35610                  --------->ATHB12     --------->REM1(1) ----------HVH21    --------->At4g35610                 <---------YAB1     <---------ETT(2) -----GT1          <-----------RAV1(1)              --------->YAB1         --------->ETT(2)       <--   ctgttacatctttttgattttctgctgtagcttaggatctgtttgaagatagaatcatatgatttgttttggttctgtctacaccttcattgctctgaga  16357600  Previous    Next  AGI:  At5g40810.1    Description:  cytochrome c1, putative. similar to cytochrome c1, putative [Arabidopsis thaliana] (TAIR:AT3G27240.1); similar to unknown [Populus trichocarpa] (GB:ABK94651.1); contains InterPro domain Cytochrome c1; (InterPro:IPR002326); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056) Range:  from: 16357121    to: 16359872    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version