Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      ----------->GT1                                                   <---------YAB1           ---------->DOF2                                                 <---------ICU4     <---------AHL20(2)                <---------AHL20(2)               --------->YAB1     --------->AHL20(1)         <---------MYB52(1)                 <---------AHL20(2)      --------->AHL20(2)<---------ZAT6       --------->MYB52(2)                <---------ARR11(3)        --------->AHL20(2) ----------->GT1      <-------TEIL                       --------->ARR11(3) --------->AHL20(2)     --------->ICU4   agttttggttcgttttttttaattcatatttctaaatttcaaagattttattcattatagaattaaaaaaaaaattgacaaagtaatagtgaaaatttca  16311900                    --------->AHL20(2)                    <---------AHL20(2)                <---------AHL20(2)                <---------ICU4                    --------->AHL20(1)                --------->ATHB51              --------->YAB1               --------->ICU4              <----------DOF2               <---------YAB1            <---------ANAC58             --------->YAB1              <---------ANAC58             <---------ICU4             <------NtERF2            --------->ICU4            <---------RAP2.6(2)            <---------ATHB51        <------MYB46(1)--------->AHL20(2)            --------->AHL20(2)      <------MYB83  <---------AHL20(1)  --------->DAG2            <---------AHL20(2)     --------->MYB55(2)                --------->DAG2                --      --------->TOE2(3)            <---------AtMYB61            --------->HSFB2a(2)             -----      --------->TOE1(3)      ----------->RAV1(1)  <---------ARR11(3)---------->DOF2          -------- ---------->DOF2--------->AHL20(2) <---------MYB46(3)           <---------HSFB2a(2)<---------MYB52(1)   gagtaaagccttaaataattatttaaaaatccaacatttggtggcctttcaaaatatttagaagttttggaaaagggtatagtccattattcaaaaaaag  16312000                                                                                         ------->TEIL                                                                                         <---------ARR14(2)                                                                                   <---------ICU4                                                                                   --------->ATHB51                                                                                   --------->ATHB12                                                                  --------->ZAT18 <---------YAB1                                       <---------TOE2(3)        <---------------AtSPL8   --------->ARR14(2)                                     ---------->DOF2         ------>MYB46(1)      --------->ICU4 ------->AHL20(2)           ---------->DOF2   <---------AtLEC2  --------------->AtSPL8  <---------CCA1(2) ------>GT1            ----------->GT1 <---------TOE1(3)     ------>MYB83 --------->AHL20(2) -->DOF2        ----------->GT1     <---------AHL20(2)    ----------------->AG <-------TEIL         <   attaaaaaatcaattgaagagaaaatagtttaaagcatttaaaggtttgaatgaattctaaccaaatgtgtacaaaaaaaattcattattgtatcttcat  16312100                 <<<<<<<<<<<<<<<<<LFY                                                              <-             <---------AHL20(2)                               ---------->DOF2              --------->AHL20(2)            --------->AHL20(2)                               --------->AHL20(2)     <---------ALFIN1            <---------AHL20(2)   <---------ANAC58      <---------ARR14(2)        --------->ZAT6    <- ---------AHL20(2)               <---------ANAC58      --------->ARR14(2) ------------>CBF-----------   attttttagtgaaattaaataacattggattttttccttgaatacaaaaaacatccaaatccattaaagactaatattcaataacaccacctataaattc  16312200                                                                                              <------                                        --------->TOE1(3)                                    >>>>>>>>                                        --------->TOE2(3)   --------->AHL20(1)              ---------               ------->GAMYB     --------->TOE2(3)          <---------AHL20(1)             <---------YAB1 --------TOE2(2)              <----------DOF2               --------->AHL20(2)    --------->YAB1 --------TOE1(2)          <<<<<<<<<<GT-3b        <-------TEIL   *TSS--------->ANAC46     <----------DOF2 >TBP       <-----------GT1<-----------GT1 ---------->DOF2 <---------CCA1(2)     <---------ATHB12   ttatgttttgaaaataaccccaaactatttttctttcttaacccttaaagtttcatttttcatatattacaccaaaatttgaaatcatcttctttgattg  16312300    <---------ANAC58            <---------YAB1    <---------ANAC58        --------->ARR14(2)            ------>ZmHOX2a(1)              <---------ARR14(2)    <---------ANAC46        <---------ARR14(2)     <---------ARR14(2)                    --------->ARR14(2) ---WOX13(1)            <------ZmHOX2a(2)          --------->ARR14(2)                <---------LBD16 >ARR2                 --------->ARR11(3)          <---------GLK1(2)  <---------CCA1(2)  <---------GLK1(2) >ATHB12               <---------ARR11(3)    --------->ATHB12<---------At4g35610    <---------ANAC46   tttttggtgtgagcgaagatgggaagatcgaattctcaatgcccatctcattggattctcctctgcttcttcatctcttctcagttttggggattctcac  16312400                                                                          --------->REM1(2)                                   --------->ICU4                      <---------ANAC55(1)                            ----------->GT1                            <---------ANAC46                     <---------ARR11(3)                                <---------ANAC58            <-                     --------->ARR11(3)                                <---------ANAC58            <-                     --------->GLK1(2)   <---------TOE1(3)     --------->At5g28300             <----- <---------ALFIN1   <---------GLK1(2)    <---------TOE2(3)    ----------->GT1                  <-----   ttcccacttcgataattcaacaaaatctcgaggtgaaatttttagggtttttcagcaatttcaactgtaaatttcgtgtagaagaatgtctgtatcactt  16312500                                                                                                    -                                                                            <-------GAMYB          <-                                                                           --------->MYB55(2)     <--                                                                           --------->MYB111(2)    <--                                                                           <---------MYB46(3)     <--                               <---------AHL20(2)                         <--------P              --- --------TOE2(3)      <---------ANAC58                                   <-------GAMYB            <-- --------TOE1(3)      <---------ANAC58        <---------GLK1(2)         <---------MYB46(3)        --- -----DOF2        <---------ANAC58            --------->ARR11(3)       <---------TOE2(3)          --- ----DAG2         <---------ANAC58            <---------ARR11(3)   <----------DOF2            -------   tagggtttgtaatcgatttggcttacttgggatttacttagaattctagattttgttcaaattttgaagctttgtggttgttgttctacagggttttaaa  16312600  ------>ZmHOX2a(1) ----->ZmHOX2a(2) -----ZmHOX2a(2) -------ARR14(3) -------ARR14(2)                                             <---------ATHB12 -------ARR11(3)                                    <---------ANAC58                                < ------>ARR14(2)                                    <---------ANAC46                                < -------GLK1(2)                                     <---------ANAC58                           <----- ------>ARR11(3)                                    <---------AtLEC2                      <---------MYB46(3) ------>ARR14(3)        --------->ATHB12   --------->At4g35610                           <---------AtMYB61 --->DOF2              <-------TEIL        <---------At4g35610 --------->WOX13(1) ---------->DOF2 <--   gatcctgaagacggttttcatgagattcattgttcaagagaacgtagcagagttgcttggaaaatcattcaagaggtatgaattgaaagcagtggttttt  16312700                                                                 <---------------AGL15                                                                 <---------ANAC58                                                                 <---------ANAC46                                                                 --------------->AGL15                                                                 <---------ANAC58                                                   --------->ZAT14             --------->ARR14(2)           <-----------RAV1(1)   <-----------------AGL2             <---------ARR14(2)           <---------MYB46(3)    ----------------->AG             --------->GLK1(2)         <-----------RAV1(1)      <-----------------AG        --------->AtLEC2             <----------DOF2            ----------------->AGL2 <---------YAB1                     ------>ZmHOX2a(2)           <-----------------AGL1 ---------AHL20(1)                --------->ARR11(3)    --------->ARR11(3)  --------->DAG2 ---------AHL20(2)          <---------YAB1<---------REM1(1)     ----------------->AGL1 ----YAB1   <---------GLK1(1)     <---------ARR11(3)    <---------ARR11(3) ---------->DOF2   <------- -------YAB1<---------CCA1(2)  <---------WOX13(1)  <---------ZAT14<---------SPL7 --------->At4g35610   attattttttatgcaaatctgtagagttttctcattgatctttgttgttgctgtgaagtatctcatgccgtatgtggaaaaggagcggtatcagttaccg  16312800  Previous    Next  AGI:  At5g40710.1    Description:  zinc finger (C2H2 type) family protein. similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G63280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14629.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 16312264    to: 16314232    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version