Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ------>MYB83                                                                            ------>MYB46(1)                                                                 <-----------GT1                         <---------AHL20(2)                <---------AHL20(2)                    ----           --------->MYB52(1)                       <---------ANAC58      <---------MYB59      <----- <---------At4g35610    <---------AHL20(2)          <---------ANAC46      <---------MYB46(2)  ------- --------->At4g35610<---------AHL20(2)        <---------YAB1<---------AHL20(2)                <------ ------->YAB1   <---------GLK1(2)<----------DOF2    <---------ANAC58<---------ICU4      --------->YAB1 -----GLK1(1)--------->YAB1<---------TOE2(3)<-----------GT1--------->AHL20(2)     <---------ALFIN1  <   atcagcatacaactagcagaattttttttaatgtgatttaagtgttttacaatagcttgtattaatttcacaattaccaaacacacacatttatgagata  16183300           <---------ATHB12     <-----------GT1 ----->GLK1(2) ----RVE1(1)                  <-----------HVH21 -->ARR11(3)            --------->ANAC58               ----------->GT1 ---ARR11(3)            --------->ANAC58       ---------->DOF2             <---------------AGL15 ---------YAB1------>ZmHOX2a(1)               <------ZmHOX2a(1)            --------------->AGL15   ttctgattatccaatcctttgaaatgaagcaatgtcacaaatgtattaggaaagatggagttaaaaacccgaattagcccaatagagaacacaaattgcc  16183400                                      --------->ALFIN1                            <---------ALFIN1                          --------->CCA1(2)                          <------ZmHOX2a(2)                         --------->ARR11(3)                         <---------ARR14(2)                         <---------ARR11(3)                         --------->AGP1                         --------->ARR14(2)                                                         <                       ----------->ARR10      --------->TOE1(3)                                <-----            --------->AHL20(2)  --------->ANAC58                                               ------            --------->AHL20(1)  --------->ANAC46       --------->ARR14(2)             <---------CCA1(2)            <---------AHL20(2)  --------->ANAC58     --------->LBD16            <---------ARR14(2)  -           --------->AHL20(2) --------->ANAC46--------->TOE2(3)---------->DOF2  --------->ARR14(2)<-- ---------->DOF2  <---------ANAC46 ------->TEIL    <---------LBD16        ----------->GT1  <---------   tctaaaagcccaaaaaaattgggtttagatccacacgaatgtggagagccttaaccggatgtgttcaaagacccgaaggtcaaatcccgtctctgtcaga  16183500         --------->AtMYB61         ------->GAMYB                                                               <---------------        <---------ATHB12                    --------->LBD16                         --------->MYB52(1)       -------->P                          <---------ANAC58                      --------->TOE2(3)       ------>MYB46(1)                     <---------ANAC55(1)            --------->ANAC46  ---------       ------>MYB83                        --------->ANAC55(2)            --------->ANAC58=========== ---------GLK1(1)                          <---------ANAC55(2)            --------->ANAC58<---------TGA1a ----At4g35610                             <---------ANAC58             --------->MYB52(1)<---------O2 --->At4g35610                             <---------ANAC46          --------->TOE2(3)--------->MYB46(3) -------->At4g35610             --------->ANAC58               --------->ANAC46--------->ICU4 <------ ----ZmHOX2a(1)   <----------DOF2<---------ATHB12            <-----------GT1  <---------GLK1(1) --HVH21--------->MYB46(3)      --------->ANAC58         --------->AHL20(2)   --------->GLK1(1)<-----   ggagatgccaaccatctctcctttctacgaacacaatcaattgttccgtatgtaaacatatatatacttcacctaaacggaattcttaaccgatgtggga  16183600     <---------ICU4   <---------ANAC55(2)                                                                   --------->TOE1(2)   --------->ANAC55(2)                                                                   --------->TOE2(2) --AGL1                                                                                  --------->TOE1(3) >ALFIN1                          <---------ALFIN1                                      <---------HSFB2a(1) =====================bZIP_DOF   <---------ZAT14                                        --------->HSFB2a(1) ----ID1       *TSS              --------->ZAT14                           --------->GLK1(2)        < ----PCF2  <----------DOF2     --------->ANAC46                   *TSS    <---------GLK1(2)       <--   caaatacttattccttttcttcaaaacctctcccctccactgcctctgtctctctgttttcgctcagatttatgaagaatctcgtttcaaaccttcgatt  16183700                                  ----------->GT1                               <---------REM1(1)                           --------->LBD16                          <---------ANAC46                          <---------ANAC55(2)                         <---------LBD16                       --------->ARR14(2)   --------->TOE1(3)         <---------YAB1<---------ARR14(2)   --------->TOE2(3)    ------>ZmHOX2a(1)--------->HSFB2a(1)    <---------MYB59 -----------GT1    <---------MYB52(1) >>>>>>>>>MYB98                      <-----------GT1     ------- ---------GT1<<<<<<<<<TBF1--------->ANAC55(2)                  ------>ZmHOX2a(1) --------->LBD16 ----   tttctcctcttattcttcttcgatagttccgcgatgtagtaacatacctaaaccaattctcaatcctctctacaatttacttccccagtctcaaaaccct  16183800                                                                       <---------bZIP60(2)                                                 <---------MYB52(1)    <---------ANAC46                                               <---------ANAC46     ----------->HVH21                                          <---------ICU4            ----------->TGA1                                          <---------KAN4(1) --------->MYB52(1)                                         <---------YAB1   <---------MYB59                                     --------->At5g28300  <---------MYB111(1)                                 ----------->RAV1(1)      <---------MYB46(2)                                 --------->AtMYB61       --------->ANAC55(2)                                 ------->GAMYB <---------ANAC58--------->TOE2(3)            =========                                --------->MYB46(3)       <---------ANAC55(2)                <--------                           --------->ANAC58    <---------ANAC58--------->TOE2(2)            ---------                           --------->ANAC58 <-----------GT1 ------>MYB83  ----------->GT1   ------>ZmHOX2a(1) -->TOE2(3)                --------->ANAC46--------->KAN4(2)------>MYB46(1)               =========== ------->GT1             --------->ZAT6  --------->ICU4<-----------GT1 <---------O2       <----------   agtaaaatcgtggatgttatctgttcaacactcaaccacagtgattattccgtcttgttacctaaccttcgtgacgaggtgaaatcgctgattcctcatt  16183900                                                                   --------->AHL20(2)                                                                   <---------AHL20(2)                                                                 --------------->AGL15                                                                 <---------------AGL15                                                                 <----------DOF2                                                            --------->ANAC55(2)           --------->ARR11(3)<---------TOE2(2)              <---------ANAC58          --------->GLK1(1)  <---------TOE1(2)              <---------ANAC55(2)       --------->LBD16       <---------TOE2(3)   --------->HSFB2a(2)       ------>ZmHOX2a(1)  <---------ANAC58   <---------ANAC58   <-----------------AGL2 ================================================================================MADS_MADS -------AGL15             <---------ANAC58   <---------ANAC58   <-----------------AGL3 ------>AGL15     <---------TOE1(2)      <---------At4g35610<---------ANAC58 ================================================================================MADS_MADS -------AG<---------GLK1(1)  <---------TOE1(3)   <---------HSFB2a(2)     ----------->GT1<---------LBD16   tgggttatcctgaaatctcgagggttttgcttaggtttcagtctgatgcttctcgagctattacgttctttaaatgggttaaatttgatttggggaagag  16184000                     <-------GAMYB                    --------->MYB52(2)                    <-----------RAV1(1)                  <---------MYB52(1)                      <---------MYB52(1)            --------->MYB46(3)                           <----------DOF2              <---------WOX13(1)       ----------->GT1   <---------ANAC58          <---------HSFC1(2)               --------->ATHB12       <------MYB83 <---------MYB46(3)             --------->HSFB2a(1)<---------GLK1(2)       <------MYB46(1)   <---------ANAC58          --------->HSFC1(2) --------->ARR14(2)   <-----------RAV1(1)---------->ID1               <---------HSFB2a(1)<---------ARR14(2)   gcctaatgttggtaactactgtttgttgcttcacattcttgtgtcttctaagaagtttcctttagctatgcagtttctctgtgaattgattgaattgaca  16184100                                                                 ------>ZmHOX2a(1)                                                                 <-----------RAV1(1)                                                               ------>ZmHOX2a(2)               ------                                                     <---------AHL20(2)                   -----------                                               <---------YAB1--------->ARR14(2)      ----------->HVH21                                            --------->ICU4   <---------ARR14(2)  <---------ANAC58             --------->ALFIN1  <---------AtMYB61  ------->TEIL<------ZmHOX2a(2)  <---------ANAC58   ---------->DOF2    <---------ZAT14  <---------At4g35610   --------->ARR11(3)<---------YAB1  <-----   tctaagaaagaagaagtggatgtgttcagagttttggtttctgctactgatgaatgtaattgggatcctgttgtttttgatatgcttgtgaaaggttatc  16184200  Previous    Next  AGI:  At5g40395.1    Description:  U6acat; snRNA. gi|2351067|dbj|AB006702.1| Arabidopsis thaliana U6acat At5g40400 gi|2351067|dbj|AB006702.1| Range:  from: 16183408    to: 16183615    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g40400.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G55840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68124.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16183666    to: 16186069    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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