Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----          <---------GLK1(2)            --------->REM1(1)                                        <---- -----------AtSPL8                   ------>ZmHOX2a(1)       ---------->DOF2                    ----- ---------->AtSPL3             --------->ARR11(3)           --------->AHL20(2)                  ----- --->At4g35610   <---------ZAT14    --------->TOE2(3)   --------->MYB46(3)                      <---- -P       <---------ARR11(3)   <---------AHL20(1)      -------->P                               ----- -MYB52(1)--------->ARR11(3)   <---------ARR11(3) --------->ZAT6   --------->ARR11(3)          ------   agtacaaacaaagattttgtaaactgattacaatatatccttcatcaacaaaacactaaccattaaagacatcttgtagactctcatttgttctaaaata  16172500                                      --------->ANAC58                                 --------->ANAC46                                 --------->ANAC58 -----ARR11(3)                   --------->ANAC58 -----AHL20(1)               --------->ANAC46 ---->AHL20(1)               --------->ANAC58 ---->ARR11(3)               --------->ANAC58 -----AHL20(2)          --------->ANAC46         <----------DOF2 ---->AHL20(2)      --------->YAB1    --------->ANAC58                                      --------- --->AHL20(2)      <---------ATHB12   --------->ANAC46               --------->YAB1         ---------   tattcaaacaaaacgtttgaaatcatacctcacacaagccaagacacattccttttggttcttgattccaaagataacaattccttcatacatcaagaaa  16172600                                      ------->GAMYB                                               ---                                  --------->ANAC46                                                <--                                --------->ANAC58                                                 ----                                --------->ANAC58                                                 <---                                --------->ANAC46                                                -----                     --------->ZAT14 <---------ALFIN1                             ----------->GT1----                     <---------ZAT14--------->ZAT14                      --------->AHL20(2)    <-----          --------->YAB1       --------->ZAT18                       --------->AHL20(1)        ------ >ANAC58 <---------ATHB12 ---------->DOF2 <----------DOF2            <---------AHL20(1)        ------ >ANAC58 <<<<<<<<<ARR2   <---------MYB52(1)            ------->TEIL --------->AHL20(2)       --------   acaattacacaatcaaaattcagttcagttaagcacacaacacactttaaactgatgtatccaaattcaaatatataaaatgtaagattaaaaccgagat  16172700    --------->AtLEC2    --------->ANAC58    --------->ANAC58    --------->ANAC55(1)    --------->ANAC46 <-------TEIL ------>ANAC55(2)                                                                   <---------MYB46(3) -------ANAC55(2)                                                                 <---------ANAC58 ----------->AtSPL3                                                               <---------ANAC58 ----TEIL                                                                         <-------GAMYB ---->CCA1(2)                                                                 --------------------->WRI1 ----------->AtSPL8           --------->ZAT6                   <---------GLK1(1) <---------MYB46(3) ----ARR14(2)                <---------ZAT14      ----------->GT1             <----------DOF2     --- --->ARR11(1)               ----------->RAV1(1)--------->HSFB2a(2)   <---------TOE1(2)       -------- --->ARR14(2)            ------>NtERF2 <-----------GT1   --------->YAB1 <---------MYB52(1)  <-------- --->ARR10              --------->ANAC46       <---------HSFB2a(2)  ------>ZmHOX2a(1)       ---------   acgtacacgcaaactactcatcttcgacgacaacactaatttctcccttctcgagtaaatcatagaactccttcgttcgtctttggttgttccaatgatg  16172800                     ---------->DOF2                   --------->LBD16                  --------->RAP2.6(2)                  ------->GAMYB                  --------->ANAC58                  --------->ANAC58                                                          ---------                 --------->MYB46(3)                                                      <------ZmHOX2a(2)                -------->P                                                              <---------ARR14(2)                ------>MYB46(1)                                            <-----------GT1------>ZmHOX2a(2)                ------>MYB83                    ------>ZmHOX2a(2)    <----------DOF2    --------->ARR11(3)      --------->MYB46(3)                        ============================HOX2a_HOX2a --------->ARR14(2)      <---------ALFIN1                        --------->ARR11(3)     ===========================HOX2a_HOX2a ---->TEIL    <---------MYB55(2)         --------->ARR14(2)          ------>ZmHOX2a(1)  <---------ARR11(3) ->YAB1--------->DEAR3(1)                <---------ARR14(2)     <------MYB83      <----------DOF2 -ATHB12      --------->MYB46(3)<---------MYB52(1) <----------DOF2   ============================HOX2a_HOX2a >ICU4--------->ANAC46         <-------GAMYB  <---------ARR11(3)<------MYB46(1)  <---------DAG2    --   cattttccacagccctccaaccgcaaagccgagcgttattccatatatgatctctttaactacgcttggtcctttataaacagcctttccgatcttctga  16172900                                                                     --------->ZAT18                       <------------CBF                              <---------ZAT14                      <---------ICU4                              <---------At5g28300                 <---------MYB59                                 <-----------GT1          <---------TOE2(3)     --------->MYB52(1)            <---------ICU4  ------>ZmHOX2a(1) >At4g35610      --------->TOE2(3)                     --------->ANAC46   <---------ZAT18 ------->TOE2(3)<---------ANAC55(2)              --------->AHL20(2)  --------->ZAT14     ---------->DOF2   acattagccatctaggttacctaaatattgcagttaacagaagtcagaacataatatacacaaatttttactgcagtgtcctaaaatatagcaaagctcc  16173000                                                   --------->ANAC55(2)                                               <----------DOF2                                              <----------DOF2                                        <------------CBF            <-----------HVH21                                       --------->ATHB51        <---------ZAT14                                       --------->ATHB12        --------->ZAT14                     --------->ANAC46  -------->ATHB1    --------->YAB1                   <---------ARR14(2)              <-----------GT1         ----------------------->TaNAC69(2)         ---------->DOF2 <---             --------->AHL20(1)       <---------YAB1    <---------YAB1--------->YAB1      --------->ARR14(2)   attctcttacacaaatatactacatggcatccatttcagtattattggcctttacgttttcatagtaaactatcacatcgtttcaaagtccaaatttgca  16173100                                                           ------>ZmHOX2a(2)                 --------                                                         <---------AGP1                      --------                                                         <---------ARR11(3)                  --------                                                         --------->ARR11(3)                <---------DOF5.7(2)                                                         --------->ARR14(2)                ----------                                                         <---------ARR14(2)                --------->MYB52(1)                ------------>CBF                        <---------CCA1(2)                --------->DOF5.7(2)  ----------->GT1           --------->YAB1       <----------DOF2    --------->CCA1(2)  --------->ANAC58 <---------ANAC46  <------------CBF            ---------->ID1     --------->AHL20(2)   --------->ANAC58 <---------HSFB2a(2)      <------------CBF<------------------------ANAC81        <---------At4g35610 ----GAMYB      <---------YAB1<---------YAB1  <-----------GT1 --------->AHL20(2) --------->At4g35610   gttgtggaaaaacaaattatcaattgaaaattgtaatagttttctgtttttcttttttggatcttaaaatatatgcaaaattcagcaaaacgctaacgca  16173200                                                                              --------->ZAT18                                       --------->AHL20(2)                   ---------->ID1                                    ----------->GT1                        <-------GAMYB    <---------ICU4                 ----------->GT1                        <-----------RAV1(1)      <- ->ANAC58                         <---------ARR11(3)                      <---------MYB46(3)      <-- ->ANAC58             <---------AHL20(2)                                  --------->MYB52(2)     <--- ->ANAC46      ----------->GT1    --------->ARR11(3)                   ------------>MYB.PH3(2)   ---- >DOF2 <-----------GT1--------->AHL20(2)<---------YAB1             --------->YAB1   <---------ANAC46-   aactgatttttacaactaggttaaaaaattgttcaagatgttaaaattgtgagtttagaattgaagcaaatatagtttgttgcactgtgtataatatact  16173300                        --------->ANAC58                        --------->ANAC58          <---------AHL20(2)         --------->AHL20(2)         <---------ATHB12       <---------------AGL15  ---------->DOF2                           <---------HSFC1(1)       --------------->AGL15--------->ANAC58                            --------->HSFB2a(2)      <-----------------AGL3--------->ANAC58                            <---------HSFB2a(2) <---------ARR11(3)   ---------->DOF2                              <--------ATHB1 --------->ARR11(3)--------->AtLEC2                                <------------ATHB5 --------ATHB12  --------->GLK1(1)                                 --------->ATHB12 -------TOE2(3)  --------->CCA1(2)                                <---------YAB1         ----------->GT1 ------ICU4      <---------GLK1(1)                                <---------ATHB12   --------->ATHB12 ----->YAB1     <---------ARR14(2)                                --------->ICU4    <---------AHL20(2) -------->YAB1  --------->ARR14(2)       <---------AtLEC2 --------->ANAC46          --------->AHL20(2)   aatgatattcaataaatggatatgcaaagcaagaaagatggtagcatgacacaactatacaagggacaatgattcgagaaaacgaattaattggaaaatt  16173400  Previous    Next  AGI:  At5g40380.1    Description:  protein kinase family protein. Identical to Cysteine-rich receptor-like protein kinase 42 precursor (CRK42) [Arabidopsis Thaliana] (GB:Q9FNE1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G70530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14731.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69244.1); contains InterPro domain Protein of unknown function DUF26 (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:I Range:  from: 16169375    to: 16172405    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g40382.1    Description:  cytochrome-c oxidase. Identical to Putative cytochrome c oxidase polypeptide Vc-4 [Arabidopsis Thaliana] (GB:Q9FNE0); similar to cytochrome c oxidase subunit Vc, putative / COX5C, putative [Arabidopsis thaliana] (TAIR:AT5G61310.2); similar to cytochrome c oxidase subunit Vc, putative / COX5C, putative [Arabidopsis thaliana] (TAIR:AT5G61310.3); similar to cytochrome c oxidase subunit Vc, putative / COX5C, putative [Arabidopsis thaliana] (TAIR:AT5G61310.4); similar to Cytochrome c oxidase polypeptide Vc (Cytochrome c oxidase subunit 5c) (GB:P19173); contains InterPro domain Cytochrome c oxidase subunit Vc; (InterPro:IPR008432) Range:  from: 16172314    to: 16172911    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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