Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->ARR14(2)           <---------ARR11(3)           --------->ARR11(3)                                                                 <------      --------->AHL20(2)                                                                      <------      <---------AHL20(1)                                                                   <---------      --------->AHL20(1)                                                                --------->YAB1 --------->AHL20(2)                                                                     <---------ICU4 <---------AHL20(2)  <-------MYC3                                                      <---------ATHB51 ----->ATHB12        ------->MYC3                                                    --------->WOX13(1) ---->ICU4 <-----------ARR10                                                       <------ZmHOX2a(2) -----YAB1--------->CCA1(1)       --------->TOE2(3)                               <---------ARR11(3) ---->GT1 --------->RVE1(1)  --------->MYB46(3)     <-------TEIL --------->YAB1   --------->ARR11(3)   gattaaaatataatatcttcgcatgtgaagaacaaaccctagttcatcaacacatacacacatataagcataacaaatattggagatcaattataacttt  16158000                                                                                          --------->ARR11(3)                                                                                          <----------                                                                         <---------AHL20(2)       <---------AHL20(2)          <---------ANAC58             <---------WOX13(1)        <---------ARR14(2)     <---------AHL20(2)            <---------ANAC58           --------->ATHB12            --------->ARR14(2)     --------->AHL20(2)      --------->ARR14(2)              --------->ICU4          --------->GLK1(2) ----DOF2                    <---------ARR14(2)         --------->REM1(1)<---------YAB1  <---------CCA1(2) ---DAG2            <---------WRKY18(1)   --------->GLK1(1)  <---------YAB1 <---------WOX13(1) --GT1 --------->AHL20(2)    <---------GLK1(2)    <---------ALFIN1      --------->AHL20(2)<---------ARR11(3)   ttgatatatatatataagagtttgacctgcagatttggcgagagagttccaaacaccttcaccatgattggcgatataattgatgagaatcaaatcttct  16158100                                                 --------->ZAT6                                                 --------->AtMYB61                                                --------->MYB46(3)                                               ------>MYB83                                              <---------ALFIN1                                              --------->ANAC46                                             --------->MYB46(3)                                             <---------MYB55(2)                                           <---------ARR14(2)                                           --------->PCF2                                       ------>ZmHOX2a(2)                                   ------>ZmHOX2a(1)                                 ----------->RAV1(2)   <----------DOF2  <---------AHL20(2)  <--------                              <---------GLK1(1)------>MYB46(1)          --------->AHL20(2)  <--------              <----------DOF2 <---------At4g35610<---------ALFIN1<-----------GT1            --------- -ARR10       <---------DAG2 ------->TEIL  --------->ARR14(2)<----------DOF2        ------->TEIL-----   tccatcgtccatggcccttttctcacctctgcatctcctgatccagacccaccactactttctcttttctccatttttatgaaatgaatctaaataagta  16158200                                                                                                    <                                                                                                   <-                                                                                                  <--                     <---------RVE1(1)                                                            <--                     <---------CCA1(1)                                                           ----                    <---------ARR11(3)                                                          <----    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       <-------    <---------YAB1  --------->ARR11(3)                                                      ---------    --------->AHL20(2)       --------->HSFC1(1)                                             <--------    <---------AHL20(2)       <---------HSFB2a(2)                                          <---------MYB46(3) -------AtSPL8     --------->YAB1                                                        <---------AtMYB61 -ICU4 <---------WOX13(1)    --------->HSFB2a(2)                                         <---------DEAR3(1) ------>AtSPL8    <---------YAB1            ---------->DOF2                              --------->ALFIN1 ---->ZAT18<---------WOX13(1)<---------HSFC1(1)            ---------->DOF2            <---------TOE2(3)   ctctatataattgatagatgatgatatttttctagagagagaaatagaaagggagagttgtgaaagtgagagagagagttgatattttgaggtggtgggc  16158300  <---------At4g35610 --------P --------MYB52(1)                                                    --------->TOE1(3) ----MYB83                                             --------->TOE1(3)       <----------DOF2 ----MYB46(1)                                          --------->TOE2(3)    --------->ARR11(3) ----->MYB111(1)                                    <-----------GT1  --------->TOE2(3) -------RAV1(2)                               --------->TOE2(3)    --------->GLK1(2)               <- --MYB46(3)                                  ----------->GT1       --------->ARR11(3)     <---------ICU4 >ALFIN1                               <---------TOE1(3)      *TSS <---------ARR11(3)    --------->ICU4 -ANAC46  <----------DOF2              <---------TOE2(3)<----------DOF2     <---------ARR11(3)   ----   aggtagctactgcttttatagagaaggtttttcaagagtttaaggcattgttaataacctttaatccaaaatcttaaatgtcttttagatactaattagc  16158400                                                                                --------->YAB1                                                                               <---------YAB1                                                                             --------->YAB1                                                                     <---------MYB46(2)                                                           --------->At4g35610--------->ARR11(3)                                                           <---------At4g35610<---------ARR11(3)                            --------->AHL20(2)          --------->ZAT14     <---------YAB1                  <---------DAG2           <-------MYC3 --------->ZAT18------>MYB46(1)        ---------->ID1      <---------AHL20(2)          <---------ZAT18------>MYB83      --------->AHL20(2)    <------------CBF    <---------AHL20(2) ------->MYC3 <---------ZAT14--------->MYB52(1)<---------AHL20(2) --------ALFIN1<-----------GT1     --------->YAB1 <---------ZAT2   <---------ARR11(3) <---------AHL20(2) ------->RAV1(1)  <----------DOF2 <---------YAB1  <---------At4g35610<---------MYB59 --------->AHL20(2)   gacacatattgtcgtttttactttattttataaattttcataacacatggggagctagtgcagcttcaagacctaactatgatcatattatatatatagt  16158500                                                      <---------YAB1                                                    <---------ICU4                                                    --------->YAB1                          <-----------GT1          --------->ICU4                        --------->AHL20(2)         <---------YAB1                    --------->AHL20(2)             <---------ATHB12               <-------TEIL                 ----------->GT1                                   <------              --------->AtLEC2   ------->TEIL    --------->YAB1                             <--------   <-----------GT1  <---------AHL20(2)    >>>>>>>>>ARR1                                     ---------   <---------AHL20(2)   <---------AHL20(2)>>>>>>>>>ARR2                        ------>ZmHOX2a(2)   tctattttctttctacatgcatataatttaacatgtatgtgtaagattgtataatcattcttggattgcaatttgattcgatctgaaccaaaatacttat  16158600                                                     ------>ZmHOX2a(2)                                                    --------->CCA1(2)                                         <---------RVE1(1)                                        <---------GLK1(2)                                        --------->ARR14(2)                                        <---------ARR11(3)               --------->ARR11(3)       --------->ARR11(3)               <---------AHL20(1)       <---------ARR14(2)          <---------AHL20(2)        <---------ZAT14 <------ZmHOX2a(2) --------->ANAC46                   <---------At4g35610       <---------DOF5.7(2) --------->ANAC58                <---------ANAC58  <---------AGP1         --------->ICU4 --------->ANAC58                --------->ALFIN1  --------->AGP1         <---------YAB1 ---ICU4  --------->AHL20(2)  ------->TEIL     ---------->DOF2--------->MYB52(1)<---------YAB1 -ANAC55(2)    <---------AHL20(2)<---------ANAC58  --------->ARR11(3)   <---------ICU4        ------- >ANAC55(2)    --------->AHL20(1)<---------ANAC46  <---------ARR11(3)--------->YAB1           <------   tccaagccatattttaatatatagttcaaatggatgtgtgcagattttttaaagatctaatagataacgcttcataatgcttaatataggggaaagtata  16158700                                       ------->MYC2                                       <-------MYC2                                       <-------MYC3                                       ------->MYC3                       ------->GAMYB                                      --------->ANAC58                  --------->At4g35610          ----------->GT1  --------->At4g35610                --------->LBD16     <---------ZAT6     <---------ATHB12                      ----------->GT1   <---------ANAC46   --------->WOX13(1)         <---------YAB1        --------->MYB52(1) -->ARR14(2)        ------>ZmHOX2a(1) --------->ANAC58      <---------LBD16            <---------ICU4 ---ARR14(2)       --------->TOE2(3) <---------TOE1(2)     --------->MYB52(1)     ----------->GT1   tggtttagtgtgaggttttatcctcaatcagccaacttgcacgtttctcttattatccgataaccggataaatcaactgaaatgaagaaaaattactgag  16158800                                                                                              -------                                                                                             <-------MYC2                                                                                             ------->MYC3                                                                                             <-------PIF5                                                                                             <-------MYC3                                                                                             ------->MYC2                                                                                             ------->PIF5                                                                                            ---------                                                                          <-----------GT1   ---------                                                                          --------->ARR14(2)=========                                                                          --------->ARR11(3)<--------                                                                          <---------ARR14(2)---------                                                                        <---------AHL20(1)  ---------                                                                        --------->ARR11(3)  ---------                                                                        <---------ARR11(3)  <--------                                                            --------->GLK1(2)    ------>ZmHOX2a(1)                                               <---------ZAT2     --------->TOE1(3)         =========       ---------->DOF2---------->DOF2          --------->ZAT2     --------->TOE2(3)       <---------ALFIN1      <---------AHL20(2)                    ---------->DOF2 --------->ARR14(2) ----------->RAV1(2)      --------->AHL20(2)              --------->YAB1        <---------ARR14(2)------>ZmHOX2a(1)   <--   aaaactaattaaagacgagttatctaaaggggaagagaaaacataacaaagctgtgtaagagaatcgaccttaatatatcctcctgtgtcttccacgtga  16158900  Previous    Next  AGI:  At5g40348.1    Description:  other RNA Range:  from: 16153822    to: 16158391    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g40350.1    Description:  MYB24 (myb domain protein 24); DNA binding / transcription factor. similar to ATMYB21 (MYB DOMAIN PROTEIN 21), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G27810.1); similar to MYB transcription factor MYB181 [Glycine max] (GB:ABH02847.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 16155772    to: 16158362    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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