Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------ARR11(3)                                        --------->ANAC58           <-------GAMYB                --------->ANAC58           <---------MYB52(1)     ------>NtERF2          <---------LBD16          --------->LBD16        --------->ANAC46       <---------ANAC58        ------>ZmHOX2a(2)       --------->LBD16         <---------ANAC58        <---------LBD16        --------->ANAC46         <---------ANAC46                     --------      <---------ARR14(2)      <---------LBD16        <----------DOF2                 <------ZmHOX2a(1)      --------->ARR14(2)    <---------ARR14(2)   --------->ANAC58            <---------GLK1(1) --------->ALFIN1           --------->ARR14(2)   --------->ANAC58            --------->GLK1(1)   ----   actgtggtgatccggttgtgtctcattctgtttccgcgactcaagaaattcaagcctttcgtggaatttagagacatggagttccaaggactgaatcagt  16096200                      --------->YAB1                      <---------ICU4                      -------->HAHB4                     --------->ICU4                     <---------YAB1    --------->TOE2(3)                ----------->GT1        <----------DOF2          --------->ETT(1)         --------->ARR14(2)                                 --------->ARR14(2) ->ATHB12 <---------LBD16          <---------ARR14(2)        --------->ZAT6           <---------ARR14(2) ----->ZAT14<------NtERF2        ----------->GT1  <-----------GT1        ------>ZmHOX2a(1)   ggagaaacttggtcgggagggtaatgatcagcgagtggatactttaaaacattcaccttcttaagactcgtcttcctcttcttgtccgtattcttcaaac  16096300                                                  <---------ANAC58                                                  <---------ANAC46                 ---------->DOF2                                                  <---------ANAC58              --------->TOE1(2)                                              <---------ANAC58                  --------->TOE2(3)                                          <----------DOF2               <-----------GT1                                <---------YAB1<---------ANAC58        <---------WOX13(1)             <-----------------AGL1   <---------TOE2(3)            <---------AHL20(2)         <<<<<<<<<TBF1<------ZmHOX2a(1)   <---------DAG2           --------->AHL20(2)               <      <<<<<<<<<TBF1<---------LBD16   <-----------GT1           <---------ANAC46 --------->TOE2(2)   <   ccttgttcttcttcttcttgttcaggaacccatgaagattaacgcttttcttgcgtctcaatgcttcgtttaattgactatacctaagagcaatgtctct  16096400                        <---------ANAC58                        <---------ANAC58             ----------->HVH21                --------->ANAC58             --------->LBD16             --------->LBD16                <---------ANAC55(2)            <---------HSFB2a(2)             --------->ANAC55(2)                    ---------->DOF2 <-           <---------LBD16           ----------->RAV1(2)                         --------->ZAT18   <- ---------DAG2  --------->ANAC58     <---------MYB52(1)                          <---------ZAT14<---- ----------DOF2--------->SPL7       <-----------HVH21----------->TGA1<---------ARR11(3)   -----------   cactttctctcgctccggaggccatgtcttgagttctccgtctggtccgtaatagatgacgcaggcttcaatatcacagagagtgcaaagctctgaagct  16096500                                                                                           <---------YAB1                                                                                         <---------ICU4                                                                                         --------->ATHB51                                                                          <---------YAB1 --------->ATHB12                                                                        --------->YAB1  <---------YAB1                                                                     ---------->DOF2    --------->ICU4 --------ANAC58     <---------At4g35610            --------->At4g35610 --------->ICU4 <---------ICU4 --------ANAC58     <-------GAMYB  <---------REM1(1)        <------ZmHOX2a(1) ------>ZmHOX2a(2) ------DOF2        <---------MYB46(3)              <---------LBD16----------->GT1     --------->YAB1 >HVH21            <-----------RAV1(1)    ----------->GT1   =========================HOX2a_HOX2a   ttcttgaagatggtctcaagtctgttgctcaaacttgttgaagcgagtgaataagcggaagaggaagaaggtaaagatgatcgcatagtcattattgttg  16096600                                                             ----------->GT1                                                           <----------DOF2                                                         <------NtERF2                                                        <---------RAP2.3(1)                                                        <---------ERF1                                                        ------>NtERF2                                                       <---------DEAR3(1)                                                       <---------RAP2.6(2)                                                       <---------RAP2.3(2)                                                       <---------ANAC46                                                      --------->RAP2.6(3)                                       --------->ANAC46<---------RAP2.3(3)                           <---------ZAT14            <---------LBD16        ---------->DOF2            <----------DOF2--------->ZAT14        <----------DOF2  ---------->DOF2             <-----   atttcgaagacaaactttctgtttcagagtgaagagaaaacacgaagacaaactttggcggctttgtgaaaaagatgaagaaagtgagaaggaaactgtg  16096700                        <---------TOE2(3)                                                    <-------                      --------->STY1(1)                                                      <-------                   --------->ZAT6         <-----------GT1                                <---------ZAT18         --------->ARR11(3)              <-----------GT1                              <---------ANAC58         <---------AHL20(1)          --------->AHL20(2)                       --------->CCA1(2)         <---------ARR11(3)         --------->AHL20(1)                       <---------ARR11(3)         --------->AHL20(1)         <---------AHL20(1)                       --------->ARR11(1)        --------->CCA1(2)           --------->ARR11(3)               >>>>>>>>>>AtSR1  <---------ANAC58       <---------ARR11(3)           <---------ARR11(3)   ------>ZmHOX2a(2)   --------->ARR11(3)       --------->ARR11(3)        --------->AHL20(2)  ----------->HVH21<---------ANAC55(2)--------->ZAT18 ----ANAC46    <---------YAB1----------->GT1--------->ZAT6----------->GT1---------->DOF2 <---------ZAT14   tgaattagagatatattttgatcactagggtttgaaaaaatatttatcactctcgctgatcggtgaaaaaacgcgtaaagatatgtgtgtgtgcgctttt  16096800                                                           --------->AHL20(2)                                                     <-------GAMYB              <---------ARR11(3)<---------ANAC46    <---------MYB46(3)              <---------AHL20(1)<---------ANAC58    --------->MYB111(2)       --------->GLK1(1)  <---------ARR11(3)   <---------TOE2(3)                            ---------   <-------TEIL<---------AHL20(2)  --------->REM1(2)--------->MYB55(2)                 --------->MYB52(1)  --------->ARR14(1)      --------->ARR11(3)   <---------TOE1(3)                      ------>ZmHOX2a(1) --------->ARR11(1)       <---------GLK1(2) <---------MYB52(1)                       <---------MYB59 <---------GLK1(2)   <---------AtLEC2       --------->DOF5.7(2)                    <-----------------AGL1 --DAG2<---------GLK1(1)----------->ARR10  <---------RAP2.6(3)                 <---------HSFB2a(1) ---DOF2     <---------CCA1(2)  <---------ANAC58   <--------P   ----------->GT1--------->HSFB2a(1)   ttagattcgatttccatatatttgcatagattttgcgtttagagccgttaagggttgttgataaaatggaaatataagagaaggtttcctaactggcaat  16096900                                                                                              -------                          ------>ZmHOX2a(1)                                                   <------                         --------->TOE2(3)                                                    -------                         --------->TOE1(3)      ----------->GT1                               -------                      <---------ARR11(3)      ---------->DOF2                                 -------                      --------->ARR11(3)    --------->ANAC46                        <---------ZAT6                 <---------AHL20(2)         --------->ANAC58                        <---------REM1(1)                 --------->AHL20(2)         --------->ANAC58                      <---------ANAC46             <---------AHL20(2)      <---------------AtSPL8                     --------->ZAT14             --------->AHL20(2)--------------->AGL15              <---------------------WRI1  ------- --->CBF   --------->TOE2(3)   <---------------AGL15             <-----------GT1<---------ZAT14------   atcagtcgtcttacattaattaaaaatccttaacttgaaatagtacaagaaagaaaaacatacaaaattaccatatgtacaatgtagtgtagctatacgt  16097000                                                                                       ---------->DOF2                                                                                      <---------MYB52(2)                                                                                      --------->MYB46(3)                                                                                    ----------->RAV1(1) --------->TOE2(3)                                                                 <----------ID1 -->ANAC58                                                                       --------->ANAC58 ---ANAC55(2)                                                              --------->ALFIN1 -->ANAC55(1)                                                              <---------ANAC46 -->ANAC58                                     --------->At4g35610       <---------ANAC58        ---- -->ANAC55(2)        --------->MYB52(1)  <-----------HVH21               <---------ANAC46        <--- -->ANAC46<---------PCF5  <---------GLK1(2)    <---------At4g35610       <---------ANAC58   --------- --->TOE2(3)   <---------CCA1(2)        --------->WOX13(1)     <<<<<<<<<TBF1     --------->ANAC58<---   aaacatcaatggggaccatctcttaacagattccacttgcatcagtcacagcttaatgaggcttcttcttctatggtgtgtgaaggcaacaaaggggact  16097100  Previous    Next  AGI:  At5g40220.1    Description:  AGL43; transcription factor. similar to AGL75, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G41200.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 16095618    to: 16096592    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g40230.1    Description:  nodulin-related. similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT5G40240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14809.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) Range:  from: 16096876    to: 16098963    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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