Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                              -------                                                                                           ------>NtERF2                                                               ------->TEIL            ------>ZmHOX2a(2)                                                    <---------ANAC58                  <---------GLK1(1)                                                    <---------ANAC58 <---------ATHB12--------->ARR11(3)                                              --------->ARR14(2)--------->ANAC58     <---------ARR11(3)  <---------ALFIN1                            <---------ARR14(2)--------->ANAC58    --------->YAB1 -->At4g35610                            --------->ALFIN1=====================================HOX2a_HOX2a ---At4g35610                            <---------ANAC46------>ZmHOX2a(1)         <---------ATHB12   ctcaacacatttcgaagaacaacattgtaggcgaacacagaaggtgtgtatttggcttcctcatgaacccaatcgagcaatgccaatgatctctgccaat  16019900         ---------->DOF2      --------->HSFB2a(2)      <---------HSFB2a(2)                                                   --------->ARR11(3)  -----    <---------HSFB2a(2)                                                  --------->DAG2  --------->HSFB2a(2)    --------->HSFB2a(2)                                                 ---------->DOF2  <---------HSFB2a(2) ------ICU4                                                        ----------->GT1  <---------ANAC58 -----HAHB4                                                   --------->ANAC58      <---------ANAC58 ----->YAB1                          <---------AHL20(2)       --------->ANAC58 <----------DOF2  ----- -----ATHB12                      ----------->GT1           ---------->DOF2 <---------ARR11(3)<------ -->WOX13(1)               ------->TEIL          <----------DOF2 ---------->DOF2   ---------->ID1   cattttctcgagaaagaagagagaccatgaaccgtatagataattgtctgtctttgtaagttgaaagcaaagaaaaaagctctttttcgttctgggtctg  16020000                                                     <----------DOF2                                                     --------------------->WRI1                                                    =============================HOX2a_HOX2a                                                    ------>ZmHOX2a(2)                                                   ==============================HOX2a_HOX2a                                                  <---------AGP1                                                  --------->ARR11(3)                                                  --------->AGP1                                                  <---------ARR14(2)                                                  --------->ARR14(3)                                                  <---------ARR14(3)                                                  --------->ARR14(2)                                                  <---------ARR11(3)                                                 <---------ARR14(1)       ------>ZmHOX2a(1)       <--                                                 <---------CCA1(2)       --------->TOE2(3)    -------                                       <---------HSFB2a(2)               --------->TOE1(3)   <-------                                       --------->HSFB2a(2)          --------->HSFC1(2)     ------>NtERF2 ---->At4g35610         <---------ARR14(2)  --------->DAG2   --------->TOE2(2)            --------->DEAR3(1) ------>GT1---------->DOF2        <---------AtMYB61<------ZmHOX2a(2)<---------HSFC1(2)--------->DEAR3(2) -----RAV1(2)           --------->ARR14(2) ---------->DOF2   --------->TOE1(2)    ----------->HVH21<-   gtgaattgaagctaaaagctcgtccatatcgacgttgtggtcgagaaaagcagatctttgatacctccgatgtttccttaaggcctgaaacgacgacgta  16020100                                      <---------ANAC58           <--------P      <----------DOF2          <-------GAMYB    <---------DAG2          <---------MYB52(1)          <---------ANAC46                                           <---       <---------LBD16 <---------CCA1(2)   <---------GLK1(2)--------->At4g35610      <-------GAMYB -------ZAT6<---------MYB46(3)        <---------ANAC58 >>>>>>>>>TBF1                <---------ANAC58 -------------->WRI1--------------->AtSPL8 <---------ARR14(2)                       <---------ANAC46 --ANAC46--------->LBD16  <---------DAG2   --------->ARR14(2)                       <---------ANAC58< --------ZAT18    <-----------GT1   <---------ANAC46>>>>>>>>>TBF1        --------->ICU4--------->WRKY38(1)   gtgttcttctccggttgttttctccatacctttttgttttgtgtggattctgaagaagaagaagcagagactgtgaagatgagattgcgttgtctagctt  16020200                                                     --------->YAB1                              --------->CCA1(2)      -------->HAHB4                             --------->ARR11(1)      <---------ICU4                             <---------ARR11(3)     --------->ICU4      <---------ANAC46       --------->ARR14(2)     <---------ATHB51                         ------->TEIL   --------->ALFIN1          <---------ARR14(2)----------->GT1                           ------------   <---------AtMYB61       ----------->ARR10 <---------TOE2(3)              <---------REM1(1)<-------TEIL --------RAV1(2)        --------->ALFIN1     <---------ANAC46   --------->DAG2 --------->ANAC58 ------ZmHOX2a(1)>>>>>>>>>>GATA-1            <---------TOE1(3) ---------->DOF2 --------->ANAC58   caggaatggtggagaagggtatcgaagtgtagatatgaggtctggttaagggtaataatggaagagaaagtgaagaagatgaagcaatttctatgtacat  16020300                                                                              --------->AHL20(1)          <---------RVE1(1)    --------->TOE2(3)                              <---------AHL20(1)         <---------ARR11(3)    ----------->GT1                                <---------AHL20(2)         --------->ARR11(3)    --------->TOE1(3)                        --------->ANAC46        <------ZmHOX2a(1)    <-------TEIL                           --------->YAB1      <---------TOE2(3)  <---------------AtSPL8                     <---------AHL20(2)    ---------->DOF2     ---------->DOF2     <-----------GT1       <-----------TBP                <--- --->AtSPL8 <---------AHL20(2)----------->GT1           --------->ETT(2)--------->ANAC55(2)      ----   cttacacaaaggatttttttaaaaacaaaagtacgttaaattttagtttccagcctcatcgacagtctatttataagtaatatatcagagttgagagtca  16020400                                                                                   <-------TEIL                                                                                   ------------>CBF                                                                                <---------ANAC55(1)                                                                                <---------ANAC55(2)                                                                                <---------ANAC46                                                            <---------RVE1(1)   <---------ANAC58                                                            <---------CCA1(1)   --------->ANAC55(2)                                                          ----------->GT1       <---------ANAC58                                                         <---------TOE2(3)     <---------------------                                                         <---------TOE1(3)     --------------->AtSPL3                                        --------->TOE1(3)--------->DAG2        --------->MYB59                                    ---------->DOF2    --------->CCA1(2) --------->LBD16             <---------CCA1(2) ---------->DOF2   <---------ATHB12    --------->ARR14(2)        <---------At4g35610 --------->ANAC58   --------->MYB52(1)    <---------ARR14(2) ------At4g35610            --------->ANAC58 --------->MYB46(3)     <---------CCA1(2) ----->At4g35610          ---------->DOF2    ------------>CBF       <---------GLK1(1)    ----------->GT1   gcaaaatttaagctcatctctatctctcaaaagcaaagtaaagcttaaccaatggagataaggtattttcatatccgtagttacgtacaattcgtaaaat  16020500                  <-----------TBP                <---------AHL20(2)               --------->ARR11(3)               <---------ARR11(3)               <---------AHL20(2)               --------->AHL20(1)               <---------AHL20(1)               --------->AHL20(2)         <---------MYB59                                         <---------CCA1(2)         --------->TOE2(3)                              --------->AHL20(2)       ------->TEIL                                     <---------AHL20(2)    <---------ANAC58                                --------->AHL20(2)    <---------ANAC58        --------->ZAT18        --------->ARR11(3)   <---------------AtSPL3   <---------ZAT14        --------->AHL20(1)                             ---   --------------->AtSPL8<---------ZAT6            <---------ARR11(3)                             ---   --------------->AtSPL3----------->GT1           <---------AHL20(1)                             <-- --TaNAC69(2) --------->AHL20(2)                --------->AHL20(2)  >>>>>>>>>RAP2.2              ----   gtgttttcgtacctaaatatatttgtagagtaaactataacccaaaccaaaaaaatatttaaatttcatatctaaaatttgtgcaaaaacaagagtcaaa  16020600             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             ----------->RAV1(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     --------->CCA1(2)          xxxxxxxxxxxxxxxxx>smallRNA(le3)                             --------->ARR11(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------ZAT6               ---------->DOF2    <---------YAB1   <---------ARR11(3)            < ------>AHL20(2)                 <xxxxxxxxxxxxxxxxsmallRNA(i) <----------DOF2  <xxxxxxxxxxxxxxxxxxxxx ------>AHL20(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->ARR11(3)<xxxxxxxxxxxx -------AHL20(2)      <---------At5g28300          --------->YAB1 ---------->DOF2   ------->TEIL  <xx ----->AHL20(2)      <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ttaattagtgttagccaacattgttacagtgctaagttaagcgaacacatatatgatgatatgtctttaaaagatatgtagactcgaacctgtaagttat  16020700                                                                                                   <x                                                                                                 <---                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                  <---------ARR14(2)                                                                                  <---------ARR11(3)                                            --------->LBD16                       --------->ARR14(2)                                          <---------LBD16                         --------->ARR11(3)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->CCA1(1) <x                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->TOE2(3)  -------                                  <xxxxxxxxxxxxxxxxsmallRNA(s)             --------->TOE1(3)  <------                                 --------->MYB46(3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->GLK1(2) --------->ANAC46                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------ANAC55(2)  <---------ETT(1)      --------->ANAC46     <---------ARR11(3)  <xxxxxxx         --------->ANAC55(2) <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------AHL20(2) <xxxxxxxxxxxxxx ----------DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->AHL20(2) ----------->GT1 xsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->AHL20(2)     --------->RVE1(1)<xx xxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->AHL20(2)  <xxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ARR11(3) ---------   agcttttaaataagtatctaataccgatttatccgacaaccttctccgggttatacacaataaaacaaatttataaatcttaaatatctggtatcaatta  16020800  Previous    Next  AGI:  At5g39980.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14883.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16017940    to: 16020300    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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