Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------ICU4                                                                                        --------->YAB1                                                                                       <---------ATHB51                                                                                       <---------ATHB12                                                                                   --------->MYB46(3)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  --------->ANAC58                                                                              --------->ANAC58                                                                              --------->ANAC46                                                                         <-----------ARR10                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)<---------                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                   <---------LBD16--------->ANAC58                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          --------->TOE1(3)   --------->ANAC58   XXXX                   <---------MYB52(2)                     --------->TOE2(3)  ------>ZmHOX2a(1)   ----                  --------->ANAC58                     <-----------GT1  <---------GLK1(1)  xxxxxxxxxx                  --------->ANAC46                --------->AHL20(1)    --------->GLK1(1) <---------YAB1                  --------->ANAC58                <---------ARR11(3) --------->LBD16 --------->WOX13(1)          <---------YAB1                    --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------ARR11(3)         --------->YAB1<---------AHL20(1)<---------ANAC55(2)--------->ICU4   ttttaaaacatgatcactgcaagaaacctcgttttaaaacataactacacaatatttttaccttcatattccgcaaatcctcgcaaccaattatgagtac  16009800                  <---------LBD16                            <---------At4g35610                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------ZAT14          ---------->DOF2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <-    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->ZAT14                       xxxxxxx  <xxxxxxxxxxxxxxxxsmallRNA(i)                        --------->LBD16                      <---------ANAC46 xxxxxxsmallRNA(le3)   --------->ANAC58            <xxxxxxxxxxxxxxxxsmallRNA(i)            <---------ANAC58 xxxxxxsmallRNA(se3)   --------->ANAC58     xxxxxxxxxxxxxxxx>smallRNA(i)                   <---------ANAC58 ------AtSPL8 --------->ARR11(3)         <xxxxxxxxxxxxxxxxsmallRNA(i)                   <-----------RAV1(1) XXXXXXXXXXXXXXXX>MIR1887  xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <------- ------>DOF2  <---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx>smallRNA(fl3)-------->P   xxxxxxxxxxxxxxxx>smallRNA(i)---------->DOF2     xxxxxxxxxxxxx   aaagcagagtctgaaagttcttcggaagcaaccagttcatgtatggactcgagacccgtgctctgatgctaaaagcagactcaaatgctactgtcgtgat  16009900                                                  <---------MYB46(3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   ----------->RAV1(1)            <------MYB83            <-----------HVH21            --------->GLK1(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------AtMYB61        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <-----------RAV1(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ARR14(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)         ------>MYB46(1)  xxxxxxxxxxxxxxxx>smallRNA(i)          ------>MYB83<<<<<<<<<MYB2 -----ZmHOX2a(1)--------->AtLEC2      <---------MYB59 xxxxxxxxxxxxxxxx>smallRNA(fl3)      ----------------->AG <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     x --YAB1<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ARR14(2)                      <<<<<<<<<SARD1<xxxxx xx>smallRNA(fl3)  ------->TEIL    <-----------GT1<------MYB46(1) --------->At4g35610   ---------->DOF2 xxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(i)<----------DOF2         <<<<<<<<<CBP60g  <xx   aggaatgctaagtatgtcatgcaccatagatgctaagttaccaaatctgtgttggttttctttccaatagctcaaaacatccaaatttcgaaaagccttt  16010000                                                 --------->ETT(2)                                                 <---------ZAT18                                <----                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <-----                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            xxxxxx                                           <-----------RAV1(1)   --------->HSFC1(2)            ------                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                xxxxxx                                   <---------ANAC58 --------->ANAC46                          xxxxxxx      --------->TOE1(3)            <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxx      --------->TOE2(3)  xxxxxxxxxxxxxxxx>smallRNA(i)     <----------DOF2               <XXXXXXXXXXXX   <-----------GT1   --------->AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(i) <----------DOF2 <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ----------------------->TaNAC69(2)         ---------->DOF2 xxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(i)    <---------HSFC1(2)--------->DAG2 xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------ANAC58 --------->bZIP60(2)        xxxxxxxxxxxxxxxxxxxxxx   ctatgtaaccttggctcatccaaataaacatctaattgcgtcttcatgttgtccacatcactttctaagcttctttctagctcaaaaaggattacaatat  16010100                         ------>ZmHOX2a(2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <------ZmHOX2a(2)                       <---------ARR14(2)                       --------->ARR14(2)          <---------ANAC58       xxxxxxxxxxxxxxxx>smallRNA(i)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     ------>ZmHOX2a(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                     <---------ARR14(2) -----YAB1<---------ANAC58 ------>ZmHOX2a(1)                                  --------->ARR11(3) ----ARR11(3)<---------ZAT18               --------->GLK1(2)                  <---------ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(i2)            <---------ARR14(2)                  --------->ARR14(2) --->ARR11(3)--------->ZAT18              --------->ARR14(2)                  <---------AGP1 xxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------GLK1(2)        <---------YAB1 xxxxxxxxxxxxxxxx>smallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------CCA1(2)    --- xxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) XXXXXXXXMIR406     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) x>smallRNA(i2)    xxxxxxxxxxxxxxxx>smallRNA(s)         *TSS  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cattttggctatgggtgcaatcttggatcctagatgaagttgcagattcttgaaaaaacttataagcttatgagtatgtggatctttctacttctaagtc  16010200                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                 ----                                                                                                xxxxx                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                                     <---------RAP2.3(1)                                                                                     <---------DEAR3(2)                                                                                    <---------RAP2.6(2)                                                                                    <---------RAP2.3(2)                                                                                    <---------DEAR3(1)                                                                                    <---------RAP2.3(3)                                                                                    --------->ETT(1)-                                                                                    <---------DREB2C(2)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  <-----------RAV1(1)x                                         --------->ARR11(3)                     <xxxxxxxxxxxxxxxxxxxx                                   <---------REM1(2)                          <----------DOF2   xxxxx                               --------->ZAT6<---------YAB1             --------->ALFIN1    xxxxxxxxx        --------->ARR11(3)   <---------ARR11(3)                       <---------ANAC46<------NtERF2<-        <---------ARR11(3)   --------->ARR11(3)   ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    ---------->DOF2      ---------->DOF2 <---------GLK1(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->DOF2        <------------CBF  --------->ICU4  <xxxxxxxxxxxxxxxxsmallRNA(i)--------->RAP2.6(3)   gaaagctaaagaactcaaaaatgtattgaaagaactctacaaagattatgagaaaaggaagttggcaagtttatgtggagcttttgtcggctctctcaac  16010300                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                ------>MYB46(1)                                                                --------->MYB52(1)      <---------ANAC58                                          ------>MYB83      <---------ANAC58                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  --------->ARR14(1)                                          <---------MYB59 xxxxxxxxxxxxxxxxxx>smallRNA(i2)                              <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxx>smallRNA(i)                                   <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->YAB1                                               --------->LBD16 xxxxxxxxxxxxxxxxxx>smallRNA(i2)             <xxxxxxxxxxxxxxxxsmallRNA(si3)                  -------- -------->ATHB12<---------DAG2          ----------->GT1--------->MYB52(1)                  --------->AtMYB61 xxxxxxxxxxxxxxx>smallRNA(i)        <---------YAB1    <---------ARR14(2)      --------->YAB1 ------>MYB83 xxxsmallRNA(fl3)                   <---------AHL20(2)--------->ARR14(2) ----------->GT1   <---------MYB59 xxxxxxxxxxx>smallRNA(i)           --------->YAB1 ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)------>MYB46(1) xxxxxxx>smallRNA(i)   <-----------GT1 <---------TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------YAB1   <----------DOF2    --------->TOE2(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->MYB46(3)   tatgattcgcttgtggagctttttttgactctctcaatattaatgtgaaaaataaagaaccggaccaaactgaaactgtataatcaaatcgaaccaaacc  16010400                --------->CCA1(2)               --------->ARR11(3)               --------->ARR11(1)               --------->ARR14(2)                                                     <---------AHL20(2)   <---------AHL20(2)                                                                <---------AHL20(2)   --------->AHL20(2)                                      ----------->GT1           <---------AHL20(1)   <---------YAB1                          --------->ARR11(3)                        --------->AHL20(1)  --------->TOE2(3)            <----------DOF2         --------->ICU4                --------->AHL20(2) ->MYB52(1)    <---------ARR14(2)          <---------GLK1(2)                 ----------->GT1   gaaatattaataccaaagatttggattgtagctctttcgattttagattttgttgtaagtatggtttttttaagagagaatgtaaaatttattcaatctt  16010500                                                                 <---------MYB46(3)  --------->ANAC55(2)                                                         <---------AHL20(2)          --------->ANAC46                                                         --------->AHL20(2)          <---------ANAC55(2)                                                   --------->ETT(1)         ----------->GT1                                                   <---------ANAC46  ---------->DOF2 --------->ANAC55(1)              --------->ZAT14                      ----------->GT1   <---------DOF5.7(2)      <-------TEIL      ------->TEIL            <-----------RAV1(1)--------->DOF5.7(2)   tttaaaaatgcatcagtttacaaatgtatcaaactactgttttcattttagtgtcgcaaaaaattagtcgttaaagcatagtataacacataatgtgtta  16010600                                                              --------->YAB1       <---------YAB1                  <---------MYB46(3)                         <-------TEIL     --------->DAG2                  <-----------RAV1(1)                --------->ALFIN1        ---------->DOF2              <---------AHL20(2)                   <---------ANAC46     ----------->GT1             <---------YAB1                     <-----------RAV1(1)  <----------DOF2           <-----   ttgcatttgaaaatttttatttgttggcaaaatgttcaccaagttgtattttgttgtggagcattcataagctttggaaaaaagtatgaaaaatttagga  16010700  Previous    Next  AGI:  At5g39955.1    Description:  transposable element gene. hAT-like transposase family (hobo/Ac/Tam3), has a 4.7e-26 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana) Range:  from: 16009662    to: 16010156    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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