Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->LBD16                              --------->HSFB2a(2)                              <---------HSFB2a(2)            --------->ANAC58                              <---------ANAC46               --------->ANAC58                             <---------LBD16                 --------->ANAC46                          --------->ARR14(2)             ----------->RAV1(1)                          <---------ARR14(2)          --------->ANAC46       --------->AHL20(2)<----------TaMYB80           --------->ANAC58 --------DOF2         --------->LBD16                 --------->AtLEC2 ---->HVH21           ------>NtERF2                  --------->WOX13(1)                         <---- -->RAV1(2)          <---------ANAC46             <-----------HVH21                             <---- >At4g35610         <---------LBD16            <----------DOF2                        --------->DAG2 -At4g35610        ------>ZmHOX2a(1)   ---------->DOF2--------->ANAC58               ---------->DOF2   ctttgttgaataaatcccttcctccgcgtattccggagacatatagccgctttgtcaagcaacaagaaacacaattgtgaggttttgtaaagtgtttgct  15978200                                                                          --------->ANAC58                                                              <---------At4g35610                                                              <---------ZAT2                                                              --------->At4g35610                                                             --------->MYB52(2) --------->HSFB2a(2)                                                    <-----------RAV1(1)   --------->ANAC58                                                  <----------DOF2        <---------TOE1(2)                                                 ------>ZmHOX2a(2)      <---------ALFIN1                                                <------ZmHOX2a(2)   <-----------HVH21                                               <---------ARR14(2)  <-----------RAV1(1)                                               <---------ARR11(3)--------->ZAT2 <---------HSFB2a(2)                 --------->YAB1--------------------->WRI1<---------ZAT6<---------SPL7 ------DOF2     <---------YAB1<---------ANAC58 --------->ARR14(2)--------->At4g35610     <---------ZAT14 -----DAG2   --------->ICU4   <---------ANAC58 --------->ARR11(3)<---------At4g35610     --------->ZAT14   ttattttcaaatgtaacgatgatagtttgtttgcttactaagttccgacgatctttgttgtgttagctgctgtcgcacgcttgtcgaagagtttactcat  15978300                                                                                    <---------ARR11(1)                                                                                    <-----------ARR10                                                                                    <---------ARR14(2)                                                                                    --------->GLK1(2)                                                                                    ------->TEIL                                  --------->ANAC55(2)                               --------->ARR14(2)                                  <---------ANAC55(2)                              <---------CCA1(2)                                  --------->ANAC58                                 <---------ARR14(1)                        <---------ARR11(1)                                      <------NtERF2                        <---------ARR14(2)                                      ------>NtERF2                        --------->ARR14(2)                                      --------->LBD16                        <---------ARR11(3)                                     --------->DEAR3(1)                        <-----------ARR10                                     --------->ATERF1(1)                  --------->ARR14(2)                                          <------NtERF2              <---------LBD16     --------->ANAC58                           <---------ATERF1(1)          <---------ARR11(3)   <<<<<<<<<<WRKY43                              <---------RAP2.3(1)          --------->ARR11(3)   --------->WRKY18(1)                           ------>NtERF2         <---------CCA1(2)     <<<<<<<<<<WRKY26                             --------->ANAC46         --------->GLK1(1)     <<<<<<<<<<WRKY38        --------->MYB59      --------->ANAC58         <---------GLK1(1)    <-----------HVH21    <----------DOF2          <---------DEAR3(1)   <---------ARR11(3)   --------->ARR11(3)    <---------ANAC58              --------->ANAC58     ----   --------->ARR14(2)  <---------CCA1(2)      <---------ANAC58             --------->SPL7       -----   --------->GLK1(2)   <---------ARR14(1)     <---------ANAC46            <------ZmHOX2a(1)     <----   cccaaaatctgatatcttcggaaccatatcttggtcaagtaagacgttgctcggttttaggtctctatggacaataggacgccgcgaatcttggtgaaga  15978400                             --------------->AtSPL8                          --------->ATHB12          --------->LBD16 <---------AHL20(2)         --------->ANAC46 --------->ATHB51                                                 --------->TOE2(3)         --------->LBD16  <---------ICU4                                                   ------->GAMYB        <------NtERF2     --------->AHL20(2)                                               --------->YAB1       <---------LBD16   --------->ICU4                                                   --------->MYB46(3) ---------->DOF2       --------->YAB1                                                    --------->ANAC58 ----->CCA1(2)        --------->AHL20(2)                       <---------AtMYB61         --------->ANAC58 ---->ARR11(3)       <---------MYB52(1)                      <----------DOF2           --------->MYB46(3) -----ARR11(3)  --------->GLK1(2)--------->PCF2     <---------At4g35610            <-----------HVH21   tataaaagtccccgagagattccattaattatttggaccctcttctcccagtttagcttagagctttggtttttgtctaagaaaatgtcacaaccaaaat  15978500                                                       ------->GAMYB                                                     -------->P<-----------GT1                                                    --------->MYB52(1)                          -----                                                  <---------MYB52(2)                            -----                <---------ATHB12           --------->ALFIN1 <---------ARR11(3)                  <----         <----------DOF2                  <-----------HVH21 --------->ARR11(3)                 <-----   cacattagtttcttttcaataactcttaatacaactacttaaactgtgaggcactaaccgaatatatacttatcgaggctgagttttccaagtactcata  15978600          ----------->HVH21        --------->At4g35610        <---------At4g35610 --------->AHL20(2)                    --------->YAB1                                 --------->CCA1(2) <---------AHL20(2)                    <---------ANAC58               <---------AHL20(2)       ------ ---->AHL20(1)                         <---------ANAC58               --------->AHL20(2)       <----- ---->AHL20(2)           *TSS       --------->KAN4(2)              --------->ARR11(3)<---------ARR14(2) -----AHL20(1)    --------->YAB1  <---------ATHB12        <---------YAB1 <---------TOE2(3)     ------ ----CCA1(2)     <------ZmHOX2a(2)<------ZmHOX2a(2)  --------->YAB1<---------ARR11(3)--------->ARR14(2)   tattaaaatcatctcaccgatcatatggactctccgatcattcgtgataaaccatggataatttttggagattttaatgaaattttggatatggatgagc  15978700                        <---------MYB52(1)                                                        <--                    <---------ZAT2                                                         <---------TGA1a                    <---------At4g35610                   --------->ZAT18                  ==========                    --------->ZAT2        <---------GLK1(2)                               <---------LBD16                   ----------->RAV1(1)    --------->ARR11(3)                          --------->At4g35610                 --------->MYB46(3)       <---------ARR11(3)          --------->KAN4(2) ----------->HVH21                --------->ANAC46       *TSS               <---------ZAT18      <---------O2--------->TGA1a --->ZAT18   <------ZmHOX2a(2)   <---------MYB52(1) =================================================bZIP_DOF ----ZAT18  --------->ARR11(3)  --------->LBD16     <----------DOF2   <xxxxxxxxxxxxxxxxsmallRNA(i)<-- --->ZAT14  <---------ARR11(3)<---------LBD16<-----------GT1      <---------At4g35610 <---------At4g35610   actctcgaatggaagatcacccagcagttacctccggtatgcgagattttcagtctttggtgaactactgctcattctcagacttggcatctcacgggcc  15978800                              <---------MYB59                              <---------------AGL15                              --------------->AGL15                             <-----------------AGL1          <---------ZAT18    ----------------->AGL2          --------->ZAT18    <-----------------AG                                                   <    <---------ANAC58         <-----------------AGL2                                                --    <---------ANAC58         ----------------->AGL1                                           -------  <-----------GT1            ----------------->AG                                            <<<<<<<< --------DOF2           <---------ICU4                                <---------ANAC58       <<<<<<<< ========bZIP_DOF      --------->ICU4----------->GT1                  <---------ANAC46  --------->ANAC46 -------DAG2          --------->ARR11(3)             <---------ZAT6   <---------ANAC58 --------->MYB46(3)   ctttttacttggtgcaataagagagataatgacccaatttggaaaaaactggatagagttatggtgaatgaggcttggaagatggtctacccacaatctt  15978900                                         <---------ANAC58                                         <---------ANAC58                         <------ZmHOX2a(1)                                         <---------ANAC46                        ----------->GT1                                        <------NtERF2                --------->ZAT14                                       <-----------HVH21             --------->ZAT18                                  <---------At5g28300                <---------ZAT18 ---------TOE2(3)           ----------------->AGL1                   <---------ZAT14 ------->YAB1            ----------->HVH21          --------->AHL20(2)    --------->TGA1a -->TOE2(3)            --------->At4g35610          <---------AHL20(2)    =========================== <ARR2                 <---------At4g35610        --------->YAB1 <-----------RAV1(1)             <--- <ARR1               <---------ZAT14  --------->ALFIN1       ------->TEIL <---------TGA1a   <--------   ataatgtttttgaagcgggagggtgttctgaccatttacggtgtcgtatcaattttaaatatgaactctggtgcacaagtgagaggaaataagcctttta  15979000                                                                                        <---------SPL7                                                                                     <-----------HVH21                                                                                    --------->O2                                                                                    --------->ANAC46                                                                                    <---------O2                                                                                    --------->bZIP60(2)                                                                                    <---------TGA1a                                                                                    --------->TGA1a                           ----------->GT1                                        <---------ALFIN1                          <------ZmHOX2a(1)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  --------->ARR14(2)                                         <-------MYC3                  <---------ARR14(2)       ----------->GT1                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <---------RAP2.6(3)    <---------ANAC46                     ------->MYC3 ==bZIP_DOF --------->ALFIN1           <---------AtMYB61                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------TOE2(3) <---------ANAC46      <----------DOF2                   --------->ARR14(2)          -- --DOF2   <-----------RAV1(1)    <-----------GT1                       <---------ARR14(2)        <---   agtttgtgaatgctgtggccgatatggaggagtttaaacctttggtggaaaatttttggacagaaacagagcctatacacatgtccacgtcgtccctgtt  15979100  Previous    Next  AGI:  At5g39861.1    Description:  pseudogene, similar to receptor kinase 5, blastp match of 69% identity and 5.6e-67 P-value to GP|16040952|dbj|BAB69683.1||AB041621 receptor kinase 5 {Brassica rapa} Range:  from: 15977582    to: 15978625    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g39862.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 4.3e-43 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 15978739    to: 15981909    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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