Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->TOE2(3)                                                                         --------->TOE1(3)                                                                        ----------->GT1                                                                  <---------ETT(2)                                                                 <------NtERF2                                                               --------->DEAR3(1)  --------->AHL20(2)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             --------->ALFIN1--------->At4g35610   --------->AHL20(1)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------AHL20(2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <-----          --------->DAG2                 <---------At5g28300 <---------At4g35610  <---------AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <--------         ---------->DOF2                xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->AHL20(2)    <---------WOX13(1)            ------------>MYB.PH3(1) <---------MYB52(1)    --------->YAB1 <-----   aggctaattgaaaaagtgtttagtaggctaacaaaaaaactgttacggtgttgaactctcgttagccgtcgatatcgttaaaaaataatttgttttactt  15966900                                                                                            <--------                                                                                            ---------                                                                                           <---------AHL20(1)                                                                                           --------->AHL20(2)                                                                                           <---------AHL20(2)                                                                                        --------->YAB1                                                                                      --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                                      <---------YAB1                                                                                     --------->TOE2(3)                   ----------->GT1                                                 <---------AHL20(1)                  --------->ANAC46                                                 <---------AHL20(2)       <----------DOF2                           ----------->RAV1(1)               --------->AHL20(2) -----DOF2       <---------LBD16          ---------->DOF2                       --------->AHL20(2) ---GT1<---------DAG2                 <-----------------AGL1                   <---------AHL20(2) ----DAG2      --------->ETT(2)    <---------MYB52(1)           --------->TOE2(3)  --------->AHL20(1)   ttttgttgacttttttatcgacggaaaaaactgttctgttatctaaaagggccacagaaacaaaaaacttaatttagagatttaaaatattaataaaatt  15967000                                                 --------->SPL7                                               <---------MYB52(1)                                            --------->SPL7                                 --------->AHL20(2)                                           <---------MYB52(1)          <---------MYB52(1)  <---------AHL20(2)                                          <---------SPL7              --------->TOE2(3)   <---------AHL20(1)                                          <-----------HVH21          ----------->GT1      --------->AHL20(2) -AHL20(2)                             <---------At5g28300   ----------->GT1 <-----------GT1       <- >AHL20(2)                            <-----------GT1       ----------->GT1 <-----------GT1<---------ATHB51   agtttggaagtttatagtactactgaaaatatgtcaaagtttaccgtccggtaccacttagaaggttaaaaacgttattttcccattttcaaaataattc  15967100                                                           ------->GAMYB                                                           --------->AtMYB61                                                          --------->MYB46(3)                                                         --------->ANAC58                                                         ------>MYB46(1)                                                         ------>MYB83                                                         -------->P                                                         --------->ANAC58                                                        ------>MYB83                                        <<<<<<<<<<<<<<<<<LFY ---------->DOF2                                    ---------->DOF2     ------>MYB46(1)                                --------->YAB1        --------->MYB46(3)            --------->MYB52(1) <---------ATHB12       ------->GAMYB          <---------MYB59    --------->WOX13(1)      --------->ANAC46        ------>NtERF2  --------->ATHB12          <---------WRKY38(1)     ------>MYB46(1)  --------->ATHB12               - <-------TEIL>>>>>>>>>MYB98 <---------WRKY12        ------>MYB83    --------->ICU4                 <- --------GLK1(2)           --------->WRKY18(1)      -------->P      <---------ATHB12 --------->ARR11(3)   agattcattgagcctaacaaattatagaggtcaatgaaaaaagcccaatgggccaacccaaccaaaagaaatcatttgaggccttaagaccctctaggtt  15967200                                                                                      <-----------HVH21                                                                                      <-----------TGA1                                                                                     --------->ANAC46                                                                                 --------->DOF5.7(2)                                                                              <---------TOE1(3)                                                                              <---------YAB1                                                                              <---------TOE2(3)                                                                          --------->At4g35610                                                                          --------->ZAT2                                                                       <---------At4g35610  ---------                                                                       --------->At4g35610 <---------ARR14(2)                   --------->DAG2                                     ----------->RAV1(1)  <---------GLK1(2)        ----------->GT1                                             --------->At4g35610    --------->ARR14(2)      <---------ANAC58                                              <---------At4g35610   <---------At4g35610      <---------ANAC46                                              --------->ZAT2 <---------DOF5.7(2)      <---------ANAC58                                             ----------->RAV1(1)--------->TOE2(3) -------->YAB1    ---------->DOF2                 *TSS           --------->At4g35610<---------TOE2(3) --------YAB1  ----------->TBP              <------ZmHOX2a(2)    <---------At4g35610<---------TOE1(3)   tttcatagtcgtgtaatataaaaagcacttcgtcttcatcgtcgcgatcaactctgtcttagttttgagcagcagcagctatggttaacgtcagattcta  15967300                                                                                             --------                                               <---------ANAC58                              --------         <---------At4g35610                   <---------ANAC58       <---------TOE2(3)      <------- >GLK1(2)--------->At4g35610     <-----------GT1             --------->At4g35610    <---------MYB52(1)   ccgaaactgtaagctctcttccctcaatcttctattttcgaaactagtttcttccctcatgcatgctgaatttagattaatactctgttttttttctcga  15967400                                            <---------YAB1                                         <---------YAB1                                       --------->YAB1                  <---------------AGL15                                       <---------ICU4         --------->CCA1(2)                                      --------->ICU4         <---------ARR14(2)         ---------->DOF2              <---------YAB1         --------->ARR11(3)          <---------AHL20(2) <-----------GT1                    --------->YAB1           --------->ARR14(2)    ----------->GT1 ->HSFC1(1)                         <--------HAHB4          <------ZmHOX2a(1)      --------->YAB1 ->HSFB2a(2)               --------->At4g35610     ====================================MADS_MADS <--- --HSFB2a(2)         <---------YAB1<---------YAB1  --------------->AGL15     <---------TOE2(3)<------   attttacttactaaagtctgattttgatcatctgtgtattattattatgttttcatgttataggatatggtttacatttagggtattgtaatttatctgt  15967500                                                                                            <--------                                                                                            <--------         --------->ZAT6                                             <-----------GT1    <---------DOF5.7(2)       <-----------GT1                <---------TOE1(3)         <---------YAB1       --------->DOF5.7(2) ------ANAC46--------->ZAT14          <---------TOE2(3)       ----------->GT1        <---------MYB52(1) -----RAV1(1)<---------ZAT14    --------->ICU4             <---------MYB52(1)   <---------MYB52(1)   tgtggaatttaactctactctgtttttatgtgtgaaaattagggtttttgtctggtactctgttttgttattaccttgttctgtttcgttatcgtatgat  15967600                                                              ------>ZmHOX2a(1)                                                              --------->ICU4                                                      --------->bZIP60(2)                                                      ==========================bZIP_DOF                                                      --------->O2                                                      <---------O2                                                      --------->TGA1a                                                      <---------TGA1a                                                      ==========================bZIP_DOF                                                      --------->ANAC46                          <----        --------->CCA1(2)                             --------->ANAC58                          <----       --------->ARR11(1)                             --------->ANAC58                      ---------       <---------ARR11(3)                        --------->ANAC58                        <---------At4g35610 -TOE2(2)        <---------AHL20(2)              --------->ANAC58    ---------->DOF2     --------->At4g35610 -TOE1(2)       <---------YAB1   ----------->GT1 --------->ANAC46<---------YAB1     <---------At4g35610   gtttttaaagatttgatttttatttgttttgaagatgggaaaacattcaagaagccacgtcgtccttatgagaaagagcgtcttgatgctgagctaaagc  15967700                                                                    ---------->DOF2                                                                   <---------MYB52(1)                                                                  --------->LBD16                                                                 --------->TOE2(3)                                                                 --------->ANAC46                                                                 <---------ANAC55(2)                                                                 --------->ANAC55(2)                                                              --------->ARR14(2)                                                              <---------ARR14(2)       --------->GLK1(2)                                      --------->GLK1(2)       --------->ARR14(2)                                    <---------GLK1(2) -----ANAC58                                             <---------At4g35610 -----ANAC58                                             --------->At4g35610 ->DOF2<---------ARR14(2)        <----------DOF2     --------->ANAC46   ttgttggagaatacggtcttcgttgtaagagagagctttggagagttcaatatacacttagcagaatccgtaatgctgcaagagaactcttaactcttga  15967800  Previous    Next  AGI:  At5g39850.1    Description:  40S ribosomal protein S9 (RPS9C). Identical to 40S ribosomal protein S9-2 (RPS9C) [Arabidopsis Thaliana] (GB:Q9FLF0); similar to 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] (TAIR:AT5G15200.1); similar to 40S ribosomal protein S9 [Catharanthus roseus] (GB:CAG47084.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4/S9, eukaryotic/archaeal; (InterPro:IPR005710); contains InterPro domain Ribosomal protein S4; (InterPro:IPR001912) Range:  from: 15967250    to: 15968653    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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