Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <------ZmHOX2a(1)                                                         --------->At4g35610   --------->TOE1(1)                                     <---------At4g35610  --------->HSFB2a(2)                                  <-----------RAV1(2)  <---------HSFB2a(2)                                <-----------HVH21  <---------LBD16                                   <------MYB46(1) --------DOF2                                       <------MYB83 --->ZmHOX2a(1)                                    --------->MYB59 <---------ICU4 -->GLK1(2)                                      >>>>>>>>>SARD1    -------->HAHB4 ---ARR14(2)                            --------->At4g35610        --------->YAB1 -->ARR14(2)                            <---------At4g35610       <---------YAB1    <----------DOF2 >TEIL  <----------DOF2       <------ZmHOX2a(1)  >>>>>>>>>CBP60g  --------->ICU4    --------->TOE2(3)   ctttctcggactttagagacatgaggttctaaggactgaatcagttgagaaatttggtcaggagagtaatgatcagcaattggatactttaaaacattca  15955200                                         <---------ANAC58                                         <---------ANAC58                                     <----------DOF2                                   <---------YAB1                                  <---------ARR11(3)                                 <---------CCA1(2)                               <----------DOF2          <-------TEIL                     ---------->DOF2                               <---------DAG2    <---------HSFB2a(2)                    --------->ICU4                          --------->WRKY12<----------DOF2                     <---------LBD16   <----              <----------DOF2  ------>ZmHOX2a(1) --------->HSFB2a(2)<<<<<<<<<TBF1<------ZmHOX2a(1) --   cgttcttcagacaagtcttttcaagtcgttgtcctttatctttgctttcttctccaagttcgtcttgttcttcttcttgttcaggaagtcataaagagta  15955300                                       --------->TOE1(2)                                       --------->TOE2(2)                           <---------ANAC58                                >>>>>>>>>WRKY6                                     <---------ANAC58                              --------->WRKY45                             --------->ANAC58         <---------ANAC58     --------->WRKY38(1)                      <---------HSFB2a(2)         <---------ANAC46     --------->WRKY12             <---------DAG2  --------->ANAC58         <---------ANAC58   <---------At4g35610         <---------ALFIN1--------->LBD16         ----- -------GT1             <---------MYB52(1)        <---------ARR11(3)  <---------LBD16           <---- ----->GAMYB          <---------ANAC46----------->RAV1(2)  <----------DOF2--------->SPL7       <-----   acgctcttcttgcgtctcaaggcttcgtttagttgactatacctgagagcaatgtcttccactttctctcgctccggaggccatgtcttgagttctccgt  15955400            ----------->HVH21    --------->LBD16   --------->ANAC55(2)   <---------ANAC55(2)                           ----------->HVH21 ------>RAV1(2)                           ---------->DOF2   --------->LBD16 -----MYB52(1)                          --------->ZAT18     ------>ZmHOX2a(1) ------HVH21----------->TGA1            <---------ZAT14<----------DOF2                        <------   ctggtccgtaatagatgacgcatgcttcgatatcacagagagtgcaaagctctgaagctttcctgaagatggtctcaagtctattgctcaaacttgttga  15955500                                                         <------ZmHOX2a(2)                                                        <---------ARR11(3)                                                      --------->ICU4                                           =====================HOX2a_HOX2a                                     ----------->RAV1(2)--------->ARR11(3)        --------->YAB1    <---------ARR14(2)     ----------->GT1 ----------->GT1         <------ZmHOX2a(1) <------ZmHOX2a(1)                               --------->GLK1(2) ---REM1(1)    <----------ID1     --------->MYB46(3)---------->DOF2                     ------------>CBF   agcgagtgaataagaagaagacgaagaggaattggaacagcctgaggaagaaggtaaagatcgaatggccatcttcttgttgatttcgaagacaatctct  15955600                                                                                  <---------GLK1(1)                                                                                  --------->GLK1(1)                                                                              <---------TOE2(3)                                                                         <------MYB46(1)                                                                         <------MYB83                                  --------->ANAC58             --------->TOE1(2)<------ZmHOX2a(1)                 ---------->DOF2  --------->ANAC58      ----------->GT1 <---------TOE2(3)               <-------TEIL ---------->DOF2     <------------CBF        --------->MYB59   ctattttttgtttcacgttcaaagtgaagagaaagcacgaagacgaatgaaattgagagagtgaaactacgaattaggtttaggaaaccctaagaagatg  15955700                                                                              <---------AHL20(2)                                                                             <---------AHL20(2)                                                                ---------->DOF2                                                              ------>ZmHOX2a(1)   <---------AHL20(2)                                                         <------MYB83    <---------RVE1(1)                                                         <------MYB46(1)<---------GLK1(2)<-----------GT1         ---------->DOF2                                --------->MYB59 --------->ARR11(3)       <---------YAB1                          <---------HSFB2a(2)      <---------ARR11(3)    --------->GLK1(2)   <----------DOF2        --------->HSFB2a(2)    ----------->ARR10<-----------GT1   atgaagaatatgaaagtcagagacaactttgtgaaatagcgatatacttatagaaaatttggtccttaaagttagattttttatttttttttcactcttc  15955800                                    <---------ARR14(2)                                    <---------ARR11(1)                                    --------->ARR11(3)                                    --------->ARR14(2)                             <---------GLK1(1)                        --------->CCA1(2)                       --------->ARR14(2)                                        ---------->DOF2                       --------->ARR11(3)                                   ----------->GT1                       <---------ARR14(2)                                  ----------->GT1              <---------ANAC58      <---------ARR11(3)                  <------ZmHOX2a(1)              <---------ANAC58     <---------CCA1(2)                  <---------TOE2(3)          ---------->DOF2    --------->GLK1(1) ----------->ARR10   <---------MYB52(1)   --------->At5g28300 <---------ARR11(3)   <---------AtLEC2       --------->DOF5.7(2)  ----------->GT1    ----------->ARR10 <----------DOF2            <---------RAP2.6(3)               <   taatcggtaaaacaaagcttgtgaagatttgatttccatatcttttgcatagatttgtgtaatttagccgttaaggactgataaaaaggaaatagttttt  15955900                                                    <---------AtLEC2                                               --------->ARR11(3)                                               <---------ARR11(3)                      --------->ICU4                                    --------->YAB1  <---------ANAC46          <----------DOF2                                ------>ZmHOX2a(2)   <---------ANAC58     --------->GLK1(1)                              --------->AGP1   --------->ARR14(2)        <---------GLK1(1)                              <---------AGP1   <---------GLK1(2)<---------AHL20(2)   <--------HAHB4                              --------->ARR11(3)    <---------ANAC58    --------->ARR14(2)                              <---------ARR11(3)--------->ARR14(1)      <---------GLK1(2)                       <---------AHL20(2)      <---------ARR14(2)       <---------ARR14(2)  ---------                       --------->AHL20(2)      --------->ARR11(1)      --------->At4g35610<---------ANAC55(2)                   --------->AHL20(2)        ----------->ARR10 --------->AHL20(1)    --------->YAB1                   <---------AHL20(2)  ---------->DOF2         <---------AHL20(1)   <---------YAB1 -----------GT1 <----------DOF2<------ZmHOX2a(2)--------->CCA1(2)      <---------At4g35610-----------   tttttctactctcactctcttttaattaataagatctataaaaaagaaagatttgcttgtccatatatatttcagataccctttgtatcattatgtaaat  15956000                   -------->ATHB1                   <---------ICU4                   --------->ATHB51                   <---------AHL20(2)                   --------->ATHB12                   -------->HAHB4                  <---------YAB1                  --------->ICU4                  <---------ATHB51                --------->YAB1               <---------AHL20(2)               <---------YAB1               --------->AHL20(2)              --------->AHL20(1)                                                                    -              <---------AHL20(1)                                                                    <              --------->AHL20(2)                                                                    -              <---------AHL20(2)                                                         --------->AHL20(2)           <---------AHL20(2)                                                            --------->AHL20(1)           --------->AHL20(2)                                                       --------->AHL20(2)        --------->YAB1                                                              <---------AHL20(2)       --------->AHL20(2) <---------GLK1(1)                                   <-------TEIL<---------AHL20(2) >AHL20(2) --------->YAB1<---------ARR14(2)                               <-------TEIL   <---------AHL20(2) >GT1  <---------AHL20(2)--------->ARR14(2)                         --------->AtMYB61    <---------AHL20(1)   agctcttaattaataatataattattggatttgctaaaaatttgtgacaatacaatctaacaaaaatcgaccaaaatacatccattttaaataaaattta  15956100  Previous    Next  AGI:  At5g39810.1    Description:  AGL98; transcription factor. similar to AGL81/EMB3008 (EMBRYO DEFECTIVE 3008), transcription factor [Arabidopsis thaliana] (TAIR:AT5G39750.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 15954506    to: 15955572    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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